Wall clock time and date at job start Mon Mar 30 2020 07:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46719 * 2 1 4 4 C 1.52999 * 109.47515 * 120.00745 * 2 1 3 5 5 N 1.46494 * 109.46908 * 175.00275 * 4 2 1 6 6 C 1.37512 * 119.99793 * 179.97438 * 5 4 2 7 7 N 1.30332 * 119.99962 * 359.97438 * 6 5 4 8 8 N 1.37648 * 119.99985 * 180.02562 * 6 5 4 9 9 C 1.39887 * 120.00198 * 174.36032 * 8 6 5 10 10 C 1.39308 * 119.95171 * 146.39402 * 9 8 6 11 11 C 1.38478 * 120.42797 * 180.02562 * 10 9 8 12 12 C 1.37689 * 120.32388 * 0.25467 * 11 10 9 13 13 C 1.40751 * 119.88360 * 359.47432 * 12 11 10 14 14 C 1.41410 * 120.20734 * 180.29727 * 13 12 11 15 15 H 1.07994 * 119.99934 * 207.89565 * 14 13 12 16 16 C 1.39932 * 120.00059 * 27.89415 * 14 13 12 17 17 N 1.30830 * 119.99890 * 11.75245 * 16 14 13 18 18 Si 1.86802 * 119.99862 * 191.74882 * 16 14 13 19 19 H 1.48497 * 109.47086 * 90.00010 * 18 16 14 20 20 H 1.48495 * 109.47039 * 210.00364 * 18 16 14 21 21 H 1.48503 * 109.47112 * 330.00346 * 18 16 14 22 22 C 1.38252 * 119.94560 * 326.37301 * 9 8 6 23 23 H 1.09001 * 109.46778 * 299.99039 * 1 2 3 24 24 H 1.08993 * 109.47593 * 59.99580 * 1 2 3 25 25 H 1.09003 * 109.47010 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46778 * 240.00961 * 2 1 3 27 27 H 1.08995 * 109.47106 * 60.00785 * 3 2 1 28 28 H 1.09001 * 109.46897 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47573 * 300.00186 * 3 2 1 30 30 H 1.08995 * 109.46997 * 54.99854 * 4 2 1 31 31 H 1.09008 * 109.46552 * 294.99617 * 4 2 1 32 32 H 0.97001 * 120.00237 * 359.97438 * 5 4 2 33 33 H 0.97001 * 119.99741 * 0.02562 * 7 6 5 34 34 H 0.97001 * 120.00268 * 354.35352 * 8 6 5 35 35 H 1.08003 * 119.78750 * 0.02562 * 10 9 8 36 36 H 1.07998 * 119.84010 * 179.97438 * 11 10 9 37 37 H 1.08002 * 120.05936 * 179.74791 * 12 11 10 38 38 H 0.96999 * 119.99621 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.16319 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5001 -0.8264 1.1903 6 6 4.1869 -1.4406 2.2111 7 7 3.5389 -1.9288 3.2311 8 7 5.5588 -1.5388 2.1562 9 6 6.2672 -2.0563 3.2457 10 6 7.4281 -2.7962 3.0324 11 6 8.1368 -3.3136 4.1037 12 6 7.6983 -3.1065 5.3924 13 6 6.5301 -2.3562 5.6236 14 6 6.0770 -2.1341 6.9446 15 1 5.0253 -1.9808 7.1361 16 6 6.9914 -2.1128 8.0036 17 7 8.2757 -2.0671 7.7582 18 14 6.3783 -2.1497 9.7678 19 1 6.2631 -3.5586 10.2225 20 1 7.3367 -1.4247 10.6401 21 1 5.0475 -1.4949 9.8431 22 6 5.8143 -1.8325 4.5326 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.6767 1.9563 0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6055 -1.7199 1.2949 31 1 1.7518 -0.1584 2.1369 32 1 3.9824 -0.4627 0.4314 33 1 2.5722 -1.8593 3.2700 34 1 6.0344 -1.2492 1.3619 35 1 7.7778 -2.9673 2.0250 36 1 9.0354 -3.8861 3.9274 37 1 8.2521 -3.5155 6.2246 38 1 8.9094 -2.0520 8.4924 39 1 4.9147 -1.2584 4.6991 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313429456.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:58 Heat of formation + Delta-G solvation = 27.202438 kcal Electronic energy + Delta-G solvation = -18880.002106 eV Core-core repulsion = 16014.538293 eV Total energy + Delta-G solvation = -2865.463812 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.39164 -38.97409 -37.15818 -35.50497 -34.09063 -32.06722 -31.43326 -29.67739 -28.06333 -27.15250 -26.70496 -23.04478 -22.55933 -21.28101 -21.05479 -19.50107 -18.58607 -17.45815 -17.03364 -16.44045 -16.23591 -16.09196 -15.70647 -15.08284 -14.67363 -14.60933 -14.34656 -13.98801 -13.57097 -13.45602 -13.25634 -12.96314 -12.79970 -12.74475 -12.45353 -12.10677 -12.01804 -11.83978 -11.74024 -11.64432 -11.27875 -11.02118 -10.36494 -10.07033 -9.21182 -9.17568 -8.54158 -8.24924 -6.26708 1.04779 1.20518 1.39299 1.52204 1.55207 1.87472 2.23404 2.26971 2.86838 3.15910 3.75542 3.88449 3.92269 4.10321 4.54550 4.56681 4.63662 4.66823 4.73732 4.77343 4.80439 4.96464 5.02284 5.19291 5.19973 5.28518 5.35856 5.36268 5.37647 5.40344 5.55401 5.74236 5.98535 6.15467 6.18676 6.33692 6.36375 6.68612 6.87632 7.08983 7.10930 7.20187 7.98930 8.46125 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024964 B = 0.004226 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.343523 B = 6624.757003 C = 7456.667772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.147 4.147 4 C 0.134 3.866 5 N -0.759 5.759 6 C 0.625 3.375 7 N -0.838 5.838 8 N -0.658 5.658 9 C 0.188 3.812 10 C -0.256 4.256 11 C -0.097 4.097 12 C -0.201 4.201 13 C 0.086 3.914 14 C -0.500 4.500 15 H 0.063 0.937 16 C 0.033 3.967 17 N -0.834 5.834 18 Si 0.982 3.018 19 H -0.262 1.262 20 H -0.265 1.265 21 H -0.264 1.264 22 C -0.212 4.212 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.400 0.600 33 H 0.334 0.666 34 H 0.418 0.582 35 H 0.124 0.876 36 H 0.116 0.884 37 H 0.100 0.900 38 H 0.284 0.716 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.852 5.113 -14.974 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.205 4.205 4 C 0.010 3.990 5 N -0.406 5.406 6 C 0.258 3.742 7 N -0.486 5.486 8 N -0.293 5.293 9 C 0.093 3.907 10 C -0.278 4.278 11 C -0.116 4.116 12 C -0.221 4.221 13 C 0.084 3.916 14 C -0.531 4.531 15 H 0.081 0.919 16 C -0.180 4.180 17 N -0.462 5.462 18 Si 0.803 3.197 19 H -0.187 1.187 20 H -0.190 1.190 21 H -0.188 1.188 22 C -0.235 4.235 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.104 0.896 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.236 0.764 33 H 0.151 0.849 34 H 0.255 0.745 35 H 0.141 0.859 36 H 0.134 0.866 37 H 0.118 0.882 38 H 0.095 0.905 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.513 4.611 -13.882 17.449 hybrid contribution -0.431 0.608 -0.187 0.768 sum -9.943 5.218 -14.069 18.001 Atomic orbital electron populations 1.21771 0.93173 1.02472 1.02784 1.21238 0.97130 0.96470 0.96469 1.21857 1.01029 0.95301 1.02295 1.21384 0.78418 0.99920 0.99302 1.45340 1.06844 1.64930 1.23502 1.18850 0.84301 0.86433 0.84663 1.70113 1.14491 1.38083 1.25917 1.41146 1.01650 1.68401 1.18136 1.17209 0.92314 0.95226 0.85938 1.20408 1.00136 1.08875 0.98393 1.20744 0.98832 0.99551 0.92478 1.21300 1.00622 1.04284 0.95903 1.17845 0.91739 0.88930 0.93127 1.19718 0.94807 1.46130 0.92454 0.91919 1.26667 0.94452 0.91523 1.05321 1.69875 1.03143 1.37614 1.35543 0.85224 0.79016 0.79403 0.76091 1.18696 1.18971 1.18827 1.21071 1.03439 1.07667 0.91295 0.92572 0.90853 0.92214 0.89625 0.93255 0.92832 0.91070 0.92713 0.93285 0.76399 0.84948 0.74450 0.85851 0.86611 0.88163 0.90505 0.88123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.19 71.98 0.66 -0.98 16 2 C -0.09 -1.25 2.96 -10.79 -0.03 -1.28 16 3 C -0.15 -1.93 9.07 71.98 0.65 -1.27 16 4 C 0.13 2.65 4.41 86.38 0.38 3.03 16 5 N -0.76 -17.57 5.40 -349.26 -1.88 -19.46 16 6 C 0.62 21.35 8.44 260.44 2.20 23.54 16 7 N -0.84 -34.28 10.78 -58.41 -0.63 -34.91 16 8 N -0.66 -23.14 5.45 -189.33 -1.03 -24.18 16 9 C 0.19 8.61 6.27 38.12 0.24 8.85 16 10 C -0.26 -11.22 9.97 22.58 0.23 -11.00 16 11 C -0.10 -4.65 10.02 22.20 0.22 -4.43 16 12 C -0.20 -11.23 8.66 22.75 0.20 -11.03 16 13 C 0.09 5.07 5.56 -21.31 -0.12 4.95 16 14 C -0.50 -29.63 9.06 23.46 0.21 -29.42 16 15 H 0.06 3.71 7.87 -2.91 -0.02 3.68 16 16 C 0.03 1.80 5.24 85.25 0.45 2.24 16 17 N -0.83 -46.26 10.83 21.82 0.24 -46.02 16 18 Si 0.98 41.42 29.58 68.60 2.03 43.45 16 19 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 20 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 21 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 22 C -0.21 -11.49 8.32 22.85 0.19 -11.30 16 23 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.05 0.73 7.18 -2.39 -0.02 0.72 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 1.15 7.97 -2.39 -0.02 1.13 16 31 H 0.05 1.09 7.97 -2.38 -0.02 1.08 16 32 H 0.40 7.09 7.76 -92.71 -0.72 6.37 16 33 H 0.33 12.21 7.15 -92.71 -0.66 11.54 16 34 H 0.42 11.14 8.92 -92.71 -0.83 10.31 16 35 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 36 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 37 H 0.10 5.85 6.18 -2.91 -0.02 5.83 16 38 H 0.28 14.24 8.30 -92.71 -0.77 13.47 16 39 H 0.10 5.65 6.30 -2.91 -0.02 5.63 16 Total: -1.00 -69.01 321.10 3.06 -65.95 By element: Atomic # 1 Polarization: 44.38 SS G_CDS: -1.14 Total: 43.25 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 5.48 Total: -28.09 kcal Atomic # 7 Polarization: -121.25 SS G_CDS: -3.31 Total: -124.56 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -69.01 3.06 -65.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313429456.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.154 kcal (2) G-P(sol) polarization free energy of solvation -69.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds