Wall clock time and date at job start Mon Mar 30 2020 07:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47242 * 2 1 4 4 C 1.53003 * 109.47216 * 239.99762 * 2 1 3 5 5 N 1.46507 * 109.46647 * 119.99737 * 2 1 3 6 6 C 1.37502 * 119.99811 * 58.55366 * 5 2 1 7 7 N 1.30340 * 120.00299 * 0.20446 * 6 5 2 8 8 N 1.37660 * 119.99935 * 180.20284 * 6 5 2 9 9 C 1.39883 * 119.99863 * 173.78806 * 8 6 5 10 10 C 1.39308 * 119.94839 * 145.83602 * 9 8 6 11 11 C 1.38488 * 120.42728 * 179.97438 * 10 9 8 12 12 C 1.37684 * 120.32315 * 0.25989 * 11 10 9 13 13 C 1.40742 * 119.88619 * 359.47274 * 12 11 10 14 14 C 1.41413 * 120.21062 * 180.29217 * 13 12 11 15 15 H 1.07995 * 120.00005 * 213.83151 * 14 13 12 16 16 C 1.39933 * 119.99418 * 33.82563 * 14 13 12 17 17 N 1.30832 * 120.00107 * 5.95524 * 16 14 13 18 18 Si 1.86801 * 119.99551 * 185.94613 * 16 14 13 19 19 H 1.48499 * 109.46917 * 60.00685 * 18 16 14 20 20 H 1.48502 * 109.46936 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47702 * 300.00473 * 18 16 14 22 22 C 1.38257 * 119.95295 * 325.81638 * 9 8 6 23 23 H 1.09003 * 109.47031 * 305.85532 * 1 2 3 24 24 H 1.09000 * 109.46847 * 65.85352 * 1 2 3 25 25 H 1.09000 * 109.47431 * 185.85063 * 1 2 3 26 26 H 1.09005 * 109.47203 * 179.97438 * 3 2 1 27 27 H 1.08992 * 109.46931 * 299.99901 * 3 2 1 28 28 H 1.09004 * 109.46858 * 59.99869 * 3 2 1 29 29 H 1.09000 * 109.46825 * 305.68274 * 4 2 1 30 30 H 1.08991 * 109.46760 * 65.68478 * 4 2 1 31 31 H 1.08999 * 109.46894 * 185.68594 * 4 2 1 32 32 H 0.96999 * 119.99881 * 238.54930 * 5 2 1 33 33 H 0.97003 * 119.99832 * 3.23016 * 7 6 5 34 34 H 0.96993 * 119.99699 * 353.79531 * 8 6 5 35 35 H 1.08001 * 119.78469 * 0.02676 * 10 9 8 36 36 H 1.08003 * 119.83609 * 179.97438 * 11 10 9 37 37 H 1.07994 * 120.05207 * 179.73586 * 12 11 10 38 38 H 0.97006 * 119.99579 * 179.97438 * 17 16 14 39 39 H 1.08000 * 120.15628 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1963 6 6 1.6616 -1.9980 1.4290 7 7 0.8925 -2.6242 0.5834 8 7 2.1170 -2.6456 2.5552 9 6 1.6520 -3.9292 2.8600 10 6 2.5012 -4.8501 3.4694 11 6 2.0511 -6.1234 3.7760 12 6 0.7595 -6.4949 3.4767 13 6 -0.1116 -5.5734 2.8662 14 6 -1.4414 -5.9457 2.5613 15 1 -1.9264 -5.5456 1.6833 16 6 -2.1286 -6.8328 3.3974 17 7 -1.5857 -7.2266 4.5207 18 14 -3.8213 -7.4544 2.9096 19 1 -3.7289 -8.1788 1.6166 20 1 -4.3317 -8.3744 3.9576 21 1 -4.7492 -6.3038 2.7672 22 6 0.3501 -4.2819 2.5564 23 1 -0.3633 0.6020 0.8329 24 1 -0.3633 0.4204 -0.9378 25 1 -0.3634 -1.0223 0.1048 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9562 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.5960 -1.7154 -1.3015 30 1 1.7622 -0.1521 -2.1362 31 1 3.1253 -0.8103 -1.1997 32 1 2.5931 -0.2255 1.8241 33 1 0.6098 -2.1836 -0.2333 34 1 2.7602 -2.2118 3.1374 35 1 3.5170 -4.5689 3.7050 36 1 2.7178 -6.8299 4.2480 37 1 0.4144 -7.4903 3.7138 38 1 -2.0623 -7.8412 5.1004 39 1 -0.3094 -3.5685 2.0846 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313436071.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:01 Heat of formation + Delta-G solvation = 68.242858 kcal Electronic energy + Delta-G solvation = -19448.173249 eV Core-core repulsion = 16584.489082 eV Total energy + Delta-G solvation = -2863.684166 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.49914 -37.68642 -35.46062 -33.33284 -31.70731 -30.70095 -29.56029 -27.51081 -27.37259 -27.25042 -25.05646 -21.87803 -20.75605 -19.94506 -19.42176 -17.67380 -17.14130 -15.74225 -15.19647 -15.04449 -14.56535 -14.56363 -14.29677 -13.58164 -13.27330 -12.85369 -12.76666 -12.47214 -12.18140 -12.08136 -11.87357 -11.76764 -11.47648 -11.27029 -11.07515 -10.99340 -10.83829 -10.57560 -10.31648 -9.79790 -9.31863 -9.09344 -8.78642 -8.36983 -7.73629 -7.14891 -6.57239 -6.38263 -4.17683 2.90216 3.03864 3.18782 3.20878 3.23420 3.34542 3.75361 4.11914 4.33548 4.64956 4.75968 4.89069 4.90377 5.34828 5.45266 5.57127 5.63736 5.65290 5.76796 5.84038 5.87838 6.01224 6.23005 6.36284 6.47720 6.56254 6.81686 6.99556 7.22642 7.30546 7.37003 7.52386 7.72041 7.94273 8.03921 8.20676 8.33601 8.53264 8.57595 8.87812 9.14240 9.18982 9.39455 10.48325 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024015 B = 0.005075 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.666103 B = 5515.436078 C = 6397.500686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.180 3.820 3 C -0.149 4.149 4 C -0.175 4.175 5 N -0.772 5.772 6 C 0.629 3.371 7 N -0.802 5.802 8 N -0.666 5.666 9 C 0.176 3.824 10 C -0.258 4.258 11 C -0.099 4.099 12 C -0.164 4.164 13 C 0.118 3.882 14 C -0.463 4.463 15 H 0.074 0.926 16 C 0.073 3.927 17 N -0.815 5.815 18 Si 0.909 3.091 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.268 1.268 22 C -0.184 4.184 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.384 0.616 33 H 0.335 0.665 34 H 0.397 0.603 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.275 0.725 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.870 13.486 -5.862 15.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.093 3.907 3 C -0.207 4.207 4 C -0.234 4.234 5 N -0.419 5.419 6 C 0.263 3.737 7 N -0.453 5.453 8 N -0.300 5.300 9 C 0.084 3.916 10 C -0.280 4.280 11 C -0.119 4.119 12 C -0.184 4.184 13 C 0.115 3.885 14 C -0.495 4.495 15 H 0.092 0.908 16 C -0.142 4.142 17 N -0.443 5.443 18 Si 0.734 3.266 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.193 1.193 22 C -0.207 4.207 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.100 0.900 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.217 0.783 33 H 0.158 0.842 34 H 0.231 0.769 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.133 0.867 38 H 0.086 0.914 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.224 12.327 -5.863 14.616 hybrid contribution -0.027 1.089 0.062 1.091 sum 5.197 13.417 -5.801 15.513 Atomic orbital electron populations 1.22541 0.94780 1.04634 1.02084 1.20107 0.93879 0.91861 0.84831 1.22005 1.01439 0.94403 1.02823 1.22491 1.01911 1.02095 0.96869 1.45657 1.57710 1.11623 1.26861 1.18832 0.88085 0.79384 0.87431 1.70264 1.25850 1.38572 1.10612 1.41385 1.47829 1.16773 1.23969 1.17184 0.92866 0.81979 0.99616 1.20054 0.97493 0.95130 1.15337 1.20425 0.96182 0.94659 1.00586 1.21312 0.91922 1.00185 1.04974 1.17507 0.92670 0.89501 0.88806 1.19457 0.97727 1.23212 1.09090 0.90760 1.25810 0.99703 0.94533 0.94128 1.69791 1.38166 1.27309 1.08995 0.86370 0.82103 0.79103 0.78989 1.19115 1.20632 1.19320 1.21136 0.93630 0.97110 1.08789 0.92235 0.91769 0.89962 0.92072 0.91000 0.91982 0.90732 0.91762 0.92205 0.78289 0.84197 0.76897 0.89724 0.89372 0.86704 0.91380 0.86760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 8.30 37.16 0.31 -1.82 16 2 C 0.18 1.95 1.06 -131.81 -0.14 1.81 16 3 C -0.15 -1.16 8.59 37.16 0.32 -0.84 16 4 C -0.17 -1.93 8.33 37.16 0.31 -1.62 16 5 N -0.77 -9.74 5.20 -49.01 -0.26 -10.00 16 6 C 0.63 10.92 7.85 -319.81 -2.51 8.41 16 7 N -0.80 -15.82 9.46 30.19 0.29 -15.53 16 8 N -0.67 -12.19 5.45 -11.19 -0.06 -12.25 16 9 C 0.18 4.07 6.26 -83.78 -0.52 3.55 16 10 C -0.26 -5.88 9.97 -39.09 -0.39 -6.27 16 11 C -0.10 -2.41 10.02 -39.69 -0.40 -2.81 16 12 C -0.16 -4.44 8.63 -38.84 -0.33 -4.78 16 13 C 0.12 3.31 5.50 -106.85 -0.59 2.72 16 14 C -0.46 -13.06 9.04 -37.74 -0.34 -13.40 16 15 H 0.07 2.06 7.85 -52.49 -0.41 1.64 16 16 C 0.07 1.93 5.31 -17.34 -0.09 1.84 16 17 N -0.81 -22.18 10.95 55.55 0.61 -21.57 16 18 Si 0.91 19.92 29.56 -169.99 -5.03 14.90 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 C -0.18 -4.81 8.32 -38.68 -0.32 -5.14 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.08 1.21 5.06 -51.93 -0.26 0.95 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 1.01 5.33 -51.93 -0.28 0.73 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.38 3.97 8.58 -40.82 -0.35 3.62 16 33 H 0.33 5.84 3.26 -40.82 -0.13 5.71 16 34 H 0.40 5.86 8.92 -40.82 -0.36 5.50 16 35 H 0.08 1.69 8.06 -52.49 -0.42 1.26 16 36 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 37 H 0.12 3.22 6.44 -52.49 -0.34 2.88 16 38 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 39 H 0.11 3.04 6.37 -52.49 -0.33 2.70 16 LS Contribution 312.33 15.07 4.71 4.71 Total: -1.00 -30.61 312.33 -9.86 -40.46 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -5.41 Total: 17.62 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -4.70 Total: -18.34 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 0.58 Total: -59.35 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.61 -9.86 -40.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313436071.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.707 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds