Wall clock time and date at job start Mon Mar 30 2020 07:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47242 * 2 1 4 4 C 1.53003 * 109.47216 * 239.99762 * 2 1 3 5 5 N 1.46507 * 109.46647 * 119.99737 * 2 1 3 6 6 C 1.37502 * 119.99811 * 58.55366 * 5 2 1 7 7 N 1.30340 * 120.00299 * 0.20446 * 6 5 2 8 8 N 1.37660 * 119.99935 * 180.20284 * 6 5 2 9 9 C 1.39883 * 119.99863 * 173.78806 * 8 6 5 10 10 C 1.39308 * 119.94839 * 145.83602 * 9 8 6 11 11 C 1.38488 * 120.42728 * 179.97438 * 10 9 8 12 12 C 1.37684 * 120.32315 * 0.25989 * 11 10 9 13 13 C 1.40742 * 119.88619 * 359.47274 * 12 11 10 14 14 C 1.41413 * 120.21062 * 180.29217 * 13 12 11 15 15 H 1.07995 * 120.00005 * 213.83151 * 14 13 12 16 16 C 1.39933 * 119.99418 * 33.82563 * 14 13 12 17 17 N 1.30832 * 120.00107 * 5.95524 * 16 14 13 18 18 Si 1.86801 * 119.99551 * 185.94613 * 16 14 13 19 19 H 1.48499 * 109.46917 * 60.00685 * 18 16 14 20 20 H 1.48502 * 109.46936 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47702 * 300.00473 * 18 16 14 22 22 C 1.38257 * 119.95295 * 325.81638 * 9 8 6 23 23 H 1.09003 * 109.47031 * 305.85532 * 1 2 3 24 24 H 1.09000 * 109.46847 * 65.85352 * 1 2 3 25 25 H 1.09000 * 109.47431 * 185.85063 * 1 2 3 26 26 H 1.09005 * 109.47203 * 179.97438 * 3 2 1 27 27 H 1.08992 * 109.46931 * 299.99901 * 3 2 1 28 28 H 1.09004 * 109.46858 * 59.99869 * 3 2 1 29 29 H 1.09000 * 109.46825 * 305.68274 * 4 2 1 30 30 H 1.08991 * 109.46760 * 65.68478 * 4 2 1 31 31 H 1.08999 * 109.46894 * 185.68594 * 4 2 1 32 32 H 0.96999 * 119.99881 * 238.54930 * 5 2 1 33 33 H 0.97003 * 119.99832 * 3.23016 * 7 6 5 34 34 H 0.96993 * 119.99699 * 353.79531 * 8 6 5 35 35 H 1.08001 * 119.78469 * 0.02676 * 10 9 8 36 36 H 1.08003 * 119.83609 * 179.97438 * 11 10 9 37 37 H 1.07994 * 120.05207 * 179.73586 * 12 11 10 38 38 H 0.97006 * 119.99579 * 179.97438 * 17 16 14 39 39 H 1.08000 * 120.15628 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1963 6 6 1.6616 -1.9980 1.4290 7 7 0.8925 -2.6242 0.5834 8 7 2.1170 -2.6456 2.5552 9 6 1.6520 -3.9292 2.8600 10 6 2.5012 -4.8501 3.4694 11 6 2.0511 -6.1234 3.7760 12 6 0.7595 -6.4949 3.4767 13 6 -0.1116 -5.5734 2.8662 14 6 -1.4414 -5.9457 2.5613 15 1 -1.9264 -5.5456 1.6833 16 6 -2.1286 -6.8328 3.3974 17 7 -1.5857 -7.2266 4.5207 18 14 -3.8213 -7.4544 2.9096 19 1 -3.7289 -8.1788 1.6166 20 1 -4.3317 -8.3744 3.9576 21 1 -4.7492 -6.3038 2.7672 22 6 0.3501 -4.2819 2.5564 23 1 -0.3633 0.6020 0.8329 24 1 -0.3633 0.4204 -0.9378 25 1 -0.3634 -1.0223 0.1048 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9562 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.5960 -1.7154 -1.3015 30 1 1.7622 -0.1521 -2.1362 31 1 3.1253 -0.8103 -1.1997 32 1 2.5931 -0.2255 1.8241 33 1 0.6098 -2.1836 -0.2333 34 1 2.7602 -2.2118 3.1374 35 1 3.5170 -4.5689 3.7050 36 1 2.7178 -6.8299 4.2480 37 1 0.4144 -7.4903 3.7138 38 1 -2.0623 -7.8412 5.1004 39 1 -0.3094 -3.5685 2.0846 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313436071.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:00 Heat of formation + Delta-G solvation = 51.415316 kcal Electronic energy + Delta-G solvation = -19448.902946 eV Core-core repulsion = 16584.489082 eV Total energy + Delta-G solvation = -2864.413863 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.75689 -39.34000 -36.99549 -35.17908 -33.18816 -31.98203 -31.49611 -29.27267 -28.27041 -28.05191 -27.06730 -23.45170 -22.62660 -21.44314 -20.71496 -19.31161 -18.62703 -17.30541 -16.79974 -16.46916 -16.17375 -16.05739 -15.50779 -15.06704 -14.65602 -14.36548 -14.23236 -13.85062 -13.47509 -13.19804 -13.04959 -12.91231 -12.78508 -12.76710 -12.71285 -12.47750 -12.13304 -12.02843 -11.95582 -11.69843 -11.26993 -11.02635 -10.34758 -9.80624 -9.14699 -9.10240 -8.50595 -8.21507 -6.27863 1.06139 1.20845 1.39071 1.50947 1.54319 1.89476 2.26317 2.28689 2.89772 3.13921 3.79622 3.86037 3.94414 4.07826 4.56232 4.62981 4.64204 4.68300 4.75055 4.78095 4.81286 4.89147 4.93736 5.17762 5.20358 5.28140 5.29017 5.32421 5.35202 5.43335 5.61820 5.83012 5.99624 6.17088 6.18635 6.34598 6.38236 6.72036 6.88346 7.10016 7.13920 7.23813 8.05287 8.51153 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024015 B = 0.005075 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.666103 B = 5515.436078 C = 6397.500686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.176 3.824 3 C -0.141 4.141 4 C -0.172 4.172 5 N -0.756 5.756 6 C 0.627 3.373 7 N -0.845 5.845 8 N -0.660 5.660 9 C 0.187 3.813 10 C -0.250 4.250 11 C -0.100 4.100 12 C -0.191 4.191 13 C 0.086 3.914 14 C -0.504 4.504 15 H 0.062 0.938 16 C 0.032 3.968 17 N -0.843 5.843 18 Si 0.981 3.019 19 H -0.263 1.263 20 H -0.266 1.266 21 H -0.265 1.265 22 C -0.203 4.203 23 H 0.058 0.942 24 H 0.085 0.915 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.399 0.601 33 H 0.344 0.656 34 H 0.417 0.583 35 H 0.124 0.876 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.283 0.717 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.076 15.343 -6.062 17.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.090 3.910 3 C -0.198 4.198 4 C -0.230 4.230 5 N -0.403 5.403 6 C 0.260 3.740 7 N -0.498 5.498 8 N -0.296 5.296 9 C 0.092 3.908 10 C -0.272 4.272 11 C -0.119 4.119 12 C -0.211 4.211 13 C 0.084 3.916 14 C -0.536 4.536 15 H 0.080 0.920 16 C -0.179 4.179 17 N -0.472 5.472 18 Si 0.802 3.198 19 H -0.187 1.187 20 H -0.190 1.190 21 H -0.190 1.190 22 C -0.226 4.226 23 H 0.077 0.923 24 H 0.104 0.896 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.235 0.765 33 H 0.168 0.832 34 H 0.254 0.746 35 H 0.142 0.858 36 H 0.134 0.866 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.477 14.254 -6.062 16.789 hybrid contribution -0.273 0.642 0.085 0.702 sum 6.204 14.896 -5.977 17.208 Atomic orbital electron populations 1.22508 0.95640 1.02454 1.03281 1.20354 0.93263 0.93585 0.83816 1.21963 1.02112 0.91746 1.04013 1.22448 1.01651 1.00847 0.98092 1.45559 1.57203 1.09788 1.27706 1.18765 0.87603 0.80886 0.86696 1.70175 1.27163 1.40642 1.11832 1.41202 1.48149 1.15481 1.24735 1.17212 0.91792 0.83943 0.97872 1.20448 0.98998 0.94177 1.13561 1.20753 0.95369 0.95992 0.99755 1.21235 0.93420 0.99484 1.06985 1.17836 0.93215 0.90673 0.89914 1.19634 0.98670 1.25472 1.09803 0.92005 1.26623 1.03634 0.94032 0.93660 1.69860 1.39864 1.27697 1.09732 0.85282 0.76875 0.78633 0.78962 1.18721 1.18991 1.18953 1.21096 0.95111 0.96458 1.09888 0.92285 0.89579 0.93468 0.90955 0.89235 0.91420 0.93730 0.89321 0.92102 0.76530 0.83228 0.74579 0.85799 0.86568 0.88613 0.90712 0.88229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.02 8.30 71.98 0.60 -3.42 16 2 C 0.18 3.42 1.06 3.60 0.00 3.43 16 3 C -0.14 -1.68 8.59 71.98 0.62 -1.06 16 4 C -0.17 -3.49 8.33 71.98 0.60 -2.89 16 5 N -0.76 -17.61 5.20 -308.97 -1.61 -19.21 16 6 C 0.63 21.34 7.85 260.44 2.04 23.39 16 7 N -0.84 -34.08 9.46 -58.41 -0.55 -34.63 16 8 N -0.66 -23.22 5.45 -189.32 -1.03 -24.25 16 9 C 0.19 8.53 6.26 38.12 0.24 8.77 16 10 C -0.25 -10.92 9.97 22.59 0.23 -10.69 16 11 C -0.10 -4.77 10.02 22.20 0.22 -4.55 16 12 C -0.19 -10.68 8.63 22.75 0.20 -10.48 16 13 C 0.09 5.06 5.50 -21.31 -0.12 4.94 16 14 C -0.50 -29.95 9.04 23.46 0.21 -29.74 16 15 H 0.06 3.66 7.85 -2.91 -0.02 3.63 16 16 C 0.03 1.76 5.31 85.25 0.45 2.21 16 17 N -0.84 -47.28 10.95 21.82 0.24 -47.04 16 18 Si 0.98 41.87 29.56 68.60 2.03 43.89 16 19 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 20 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 21 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 22 C -0.20 -10.96 8.32 22.85 0.19 -10.77 16 23 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.05 1.42 5.06 -2.39 -0.01 1.40 16 26 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.04 1.19 5.33 -2.39 -0.01 1.18 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.40 7.07 8.58 -92.71 -0.80 6.28 16 33 H 0.34 12.39 3.26 -92.71 -0.30 12.09 16 34 H 0.42 11.17 8.92 -92.71 -0.83 10.35 16 35 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 36 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 37 H 0.10 5.61 6.44 -2.91 -0.02 5.59 16 38 H 0.28 14.41 8.30 -92.70 -0.77 13.64 16 39 H 0.10 5.58 6.37 -2.91 -0.02 5.56 16 Total: -1.00 -69.84 312.33 3.72 -66.12 By element: Atomic # 1 Polarization: 46.84 SS G_CDS: -0.84 Total: 46.00 kcal Atomic # 6 Polarization: -36.36 SS G_CDS: 5.48 Total: -30.88 kcal Atomic # 7 Polarization: -122.18 SS G_CDS: -2.95 Total: -125.14 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -69.84 3.72 -66.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313436071.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.539 kcal (2) G-P(sol) polarization free energy of solvation -69.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds