Wall clock time and date at job start Mon Mar 30 2020 06:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00141 * 2 1 4 4 H 1.08990 * 110.01941 * 331.38951 * 3 2 1 5 5 C 1.54268 * 110.07251 * 92.81066 * 3 2 1 6 6 C 1.54887 * 104.19673 * 142.91869 * 5 3 2 7 7 C 1.55018 * 102.75242 * 322.04207 * 6 5 3 8 8 C 1.53874 * 110.03067 * 209.99855 * 3 2 1 9 9 H 1.09001 * 110.03188 * 359.97438 * 8 3 2 10 10 N 1.46500 * 110.03378 * 121.38062 * 8 3 2 11 11 C 1.39681 * 120.00246 * 204.30945 * 10 8 3 12 12 C 1.39337 * 119.94975 * 0.02562 * 11 10 8 13 13 C 1.38485 * 120.42357 * 179.97438 * 12 11 10 14 14 C 1.37691 * 120.32329 * 0.02562 * 13 12 11 15 15 C 1.40749 * 119.89118 * 359.97438 * 14 13 12 16 16 C 1.41413 * 120.20255 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99845 * 150.20425 * 16 15 14 18 18 C 1.39923 * 119.99918 * 330.19614 * 16 15 14 19 19 N 1.30829 * 120.00059 * 161.72997 * 18 16 15 20 20 Si 1.86802 * 120.00362 * 341.73493 * 18 16 15 21 21 H 1.48496 * 109.47140 * 95.41164 * 20 18 16 22 22 H 1.48497 * 109.47250 * 215.40858 * 20 18 16 23 23 H 1.48497 * 109.46833 * 335.41144 * 20 18 16 24 24 C 1.38279 * 119.95109 * 180.02562 * 11 10 8 25 25 H 1.09005 * 109.47009 * 59.99634 * 1 2 3 26 26 H 1.08994 * 109.47538 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47074 * 300.00355 * 1 2 3 28 28 H 1.09007 * 110.48168 * 261.59570 * 5 3 2 29 29 H 1.09002 * 110.48877 * 24.10430 * 5 3 2 30 30 H 1.08993 * 110.76375 * 80.36912 * 6 5 3 31 31 H 1.09002 * 110.75362 * 203.74383 * 6 5 3 32 32 H 1.09002 * 110.50129 * 279.29889 * 7 6 5 33 33 H 1.08997 * 110.52412 * 156.61592 * 7 6 5 34 34 H 0.96996 * 119.99694 * 24.31057 * 10 8 3 35 35 H 1.07996 * 119.79263 * 359.97438 * 12 11 10 36 36 H 1.07995 * 119.83501 * 179.97438 * 13 12 11 37 37 H 1.07993 * 120.05165 * 179.97438 * 14 13 12 38 38 H 0.97000 * 120.00549 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.16265 * 359.72496 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3407 2.0120 -0.4904 5 6 2.2905 1.7602 1.4472 6 6 3.6249 2.5405 1.3486 7 6 4.4274 1.7159 0.3098 8 6 3.3684 1.2777 -0.7228 9 1 3.5843 0.2683 -1.0732 10 7 3.3543 2.2092 -1.8534 11 6 4.2214 2.0131 -2.9308 12 6 5.0990 0.9308 -2.9293 13 6 5.9626 0.7267 -3.9926 14 6 5.9635 1.5923 -5.0634 15 6 5.0826 2.6900 -5.0788 16 6 5.0776 3.5828 -6.1755 17 1 4.1681 4.0968 -6.4491 18 6 6.2511 3.8003 -6.9058 19 7 6.1888 4.3223 -8.1039 20 14 7.9070 3.3453 -6.1705 21 1 8.2999 1.9910 -6.6357 22 1 8.9286 4.3327 -6.6023 23 1 7.8087 3.3505 -4.6888 24 6 4.2076 2.8933 -3.9972 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.4928 2.4122 1.8034 29 1 2.3986 0.8972 2.1042 30 1 3.4537 3.5546 0.9878 31 1 4.1371 2.5528 2.3106 32 1 4.8824 0.8454 0.7825 33 1 5.1888 2.3354 -0.1641 34 1 2.7428 2.9621 -1.8538 35 1 5.1059 0.2467 -2.0937 36 1 6.6391 -0.1150 -3.9814 37 1 6.6390 1.4293 -5.8900 38 1 7.0022 4.4727 -8.6104 39 1 3.5247 3.7299 -4.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313480468.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:30 Heat of formation + Delta-G solvation = -33.048720 kcal Electronic energy + Delta-G solvation = -19401.332820 eV Core-core repulsion = 16500.963570 eV Total energy + Delta-G solvation = -2900.369250 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.48814 -37.80569 -36.20383 -34.06675 -32.84810 -30.15441 -28.96754 -28.28399 -26.89309 -25.53908 -24.99865 -21.32602 -21.01120 -20.55857 -19.51591 -17.61960 -16.75553 -16.31271 -15.77200 -15.38483 -14.68126 -14.60904 -14.43427 -14.12623 -13.91342 -13.23699 -12.58413 -12.54308 -12.34648 -12.31909 -11.87651 -11.74169 -11.49347 -11.32513 -11.07153 -10.85330 -10.69978 -10.63015 -10.59856 -10.37327 -9.76130 -9.67028 -9.45523 -9.18409 -8.85688 -7.55175 -6.84834 -6.43254 -4.40592 2.74195 2.95735 3.21393 3.31153 3.43102 3.51074 4.09583 4.23613 4.47920 4.60464 4.68188 4.93051 5.09373 5.21793 5.23286 5.44604 5.47826 5.55115 5.57507 5.62592 5.72530 5.80988 5.89420 6.03045 6.11925 6.23390 6.31942 6.41564 6.63206 6.84088 6.89565 7.02989 7.14282 7.35719 7.62016 7.73894 7.84948 8.03902 8.39522 8.46507 8.54575 8.82342 8.95611 10.18171 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033191 B = 0.004602 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.393667 B = 6082.353037 C = 6283.581064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.078 3.922 4 H 0.067 0.933 5 C -0.144 4.144 6 C -0.121 4.121 7 C -0.137 4.137 8 C 0.156 3.844 9 H 0.091 0.909 10 N -0.751 5.751 11 C 0.237 3.763 12 C -0.298 4.298 13 C -0.048 4.048 14 C -0.271 4.271 15 C 0.125 3.875 16 C -0.452 4.452 17 H 0.087 0.913 18 C 0.086 3.914 19 N -0.815 5.815 20 Si 0.915 3.085 21 H -0.272 1.272 22 H -0.295 1.295 23 H -0.244 1.244 24 C -0.277 4.277 25 H 0.042 0.958 26 H 0.084 0.916 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.388 0.612 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.283 0.717 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.249 -4.387 16.114 17.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C 0.019 3.981 4 H 0.085 0.915 5 C -0.182 4.182 6 C -0.158 4.158 7 C -0.177 4.177 8 C 0.050 3.950 9 H 0.109 0.891 10 N -0.384 5.384 11 C 0.138 3.862 12 C -0.321 4.321 13 C -0.067 4.067 14 C -0.292 4.292 15 C 0.122 3.878 16 C -0.481 4.481 17 H 0.105 0.895 18 C -0.132 4.132 19 N -0.440 5.440 20 Si 0.742 3.258 21 H -0.198 1.198 22 H -0.223 1.223 23 H -0.168 1.168 24 C -0.301 4.301 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.221 0.779 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.023 -4.594 15.957 17.663 hybrid contribution 0.230 0.371 0.107 0.450 sum -5.793 -4.223 16.063 17.590 Atomic orbital electron populations 1.22771 0.81315 1.02616 0.99817 1.87938 1.19453 1.27500 1.94959 1.23101 0.95012 0.84627 0.95338 0.91469 1.22857 0.98118 1.00421 0.96796 1.22437 0.95213 0.98908 0.99285 1.22884 0.98262 1.00087 0.96422 1.21245 0.91956 0.95220 0.86618 0.89114 1.44552 1.43723 1.30956 1.19158 1.17520 0.88928 0.93482 0.86302 1.19952 1.06790 1.02960 1.02383 1.20376 0.96171 0.96856 0.93330 1.20894 1.07898 0.99837 1.00531 1.17440 0.89370 0.90481 0.90534 1.19440 0.97851 1.22330 1.08491 0.89470 1.26128 1.01953 0.91994 0.93132 1.69710 1.31564 1.33810 1.08885 0.86270 0.79738 0.77474 0.82326 1.19811 1.22272 1.16754 1.20395 1.10499 1.03298 0.95941 0.93958 0.89750 0.94315 0.91706 0.90445 0.91392 0.91513 0.91263 0.90306 0.77868 0.88835 0.89054 0.88597 0.90663 0.88615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.85 101.05 1.10 1.40 16 2 O -0.38 -4.96 10.26 -35.23 -0.36 -5.32 16 3 C 0.08 0.95 3.15 -25.61 -0.08 0.87 16 4 H 0.07 0.79 7.27 -51.93 -0.38 0.41 16 5 C -0.14 -1.46 6.56 -25.07 -0.16 -1.63 16 6 C -0.12 -1.28 6.91 -24.67 -0.17 -1.45 16 7 C -0.14 -1.79 6.55 -25.00 -0.16 -1.95 16 8 C 0.16 2.28 2.72 -66.81 -0.18 2.10 16 9 H 0.09 1.49 6.28 -51.93 -0.33 1.17 16 10 N -0.75 -12.66 5.21 -51.14 -0.27 -12.93 16 11 C 0.24 5.03 6.64 -83.86 -0.56 4.47 16 12 C -0.30 -6.39 9.22 -39.08 -0.36 -6.75 16 13 C -0.05 -1.09 10.02 -39.69 -0.40 -1.49 16 14 C -0.27 -6.81 7.17 -38.83 -0.28 -7.08 16 15 C 0.13 3.29 5.10 -106.85 -0.55 2.74 16 16 C -0.45 -12.63 9.57 -37.74 -0.36 -12.99 16 17 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 18 C 0.09 2.33 5.40 -17.35 -0.09 2.23 16 19 N -0.81 -22.35 13.93 55.55 0.77 -21.58 16 20 Si 0.91 21.63 24.52 -169.99 -4.17 17.46 16 21 H -0.27 -6.26 6.71 56.52 0.38 -5.88 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.24 -5.94 6.86 56.52 0.39 -5.55 16 24 C -0.28 -6.62 9.63 -38.68 -0.37 -6.99 16 25 H 0.04 0.40 8.10 -51.93 -0.42 -0.02 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.78 8.08 -51.93 -0.42 0.37 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 34 H 0.39 5.93 8.31 -40.82 -0.34 5.59 16 35 H 0.09 1.81 6.22 -52.49 -0.33 1.48 16 36 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.10 2.41 4.72 -52.49 -0.25 2.16 16 38 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 39 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 312.43 15.07 4.71 4.71 Total: -1.00 -28.98 312.43 -7.80 -36.77 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -5.85 Total: 7.40 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: -2.63 Total: -26.52 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.51 Total: -34.50 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.36 Total: -5.32 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.17 Total: 17.46 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.98 -7.80 -36.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313480468.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.725 kcal (2) G-P(sol) polarization free energy of solvation -28.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds