Wall clock time and date at job start Mon Mar 30 2020 06:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00141 * 2 1 4 4 H 1.08990 * 110.01941 * 331.38951 * 3 2 1 5 5 C 1.54268 * 110.07251 * 92.81066 * 3 2 1 6 6 C 1.54887 * 104.19673 * 142.91869 * 5 3 2 7 7 C 1.55018 * 102.75242 * 322.04207 * 6 5 3 8 8 C 1.53874 * 110.03067 * 209.99855 * 3 2 1 9 9 H 1.09001 * 110.03188 * 359.97438 * 8 3 2 10 10 N 1.46500 * 110.03378 * 121.38062 * 8 3 2 11 11 C 1.39681 * 120.00246 * 204.30945 * 10 8 3 12 12 C 1.39337 * 119.94975 * 0.02562 * 11 10 8 13 13 C 1.38485 * 120.42357 * 179.97438 * 12 11 10 14 14 C 1.37691 * 120.32329 * 0.02562 * 13 12 11 15 15 C 1.40749 * 119.89118 * 359.97438 * 14 13 12 16 16 C 1.41413 * 120.20255 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99845 * 150.20425 * 16 15 14 18 18 C 1.39923 * 119.99918 * 330.19614 * 16 15 14 19 19 N 1.30829 * 120.00059 * 161.72997 * 18 16 15 20 20 Si 1.86802 * 120.00362 * 341.73493 * 18 16 15 21 21 H 1.48496 * 109.47140 * 95.41164 * 20 18 16 22 22 H 1.48497 * 109.47250 * 215.40858 * 20 18 16 23 23 H 1.48497 * 109.46833 * 335.41144 * 20 18 16 24 24 C 1.38279 * 119.95109 * 180.02562 * 11 10 8 25 25 H 1.09005 * 109.47009 * 59.99634 * 1 2 3 26 26 H 1.08994 * 109.47538 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47074 * 300.00355 * 1 2 3 28 28 H 1.09007 * 110.48168 * 261.59570 * 5 3 2 29 29 H 1.09002 * 110.48877 * 24.10430 * 5 3 2 30 30 H 1.08993 * 110.76375 * 80.36912 * 6 5 3 31 31 H 1.09002 * 110.75362 * 203.74383 * 6 5 3 32 32 H 1.09002 * 110.50129 * 279.29889 * 7 6 5 33 33 H 1.08997 * 110.52412 * 156.61592 * 7 6 5 34 34 H 0.96996 * 119.99694 * 24.31057 * 10 8 3 35 35 H 1.07996 * 119.79263 * 359.97438 * 12 11 10 36 36 H 1.07995 * 119.83501 * 179.97438 * 13 12 11 37 37 H 1.07993 * 120.05165 * 179.97438 * 14 13 12 38 38 H 0.97000 * 120.00549 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.16265 * 359.72496 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3407 2.0120 -0.4904 5 6 2.2905 1.7602 1.4472 6 6 3.6249 2.5405 1.3486 7 6 4.4274 1.7159 0.3098 8 6 3.3684 1.2777 -0.7228 9 1 3.5843 0.2683 -1.0732 10 7 3.3543 2.2092 -1.8534 11 6 4.2214 2.0131 -2.9308 12 6 5.0990 0.9308 -2.9293 13 6 5.9626 0.7267 -3.9926 14 6 5.9635 1.5923 -5.0634 15 6 5.0826 2.6900 -5.0788 16 6 5.0776 3.5828 -6.1755 17 1 4.1681 4.0968 -6.4491 18 6 6.2511 3.8003 -6.9058 19 7 6.1888 4.3223 -8.1039 20 14 7.9070 3.3453 -6.1705 21 1 8.2999 1.9910 -6.6357 22 1 8.9286 4.3327 -6.6023 23 1 7.8087 3.3505 -4.6888 24 6 4.2076 2.8933 -3.9972 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.4928 2.4122 1.8034 29 1 2.3986 0.8972 2.1042 30 1 3.4537 3.5546 0.9878 31 1 4.1371 2.5528 2.3106 32 1 4.8824 0.8454 0.7825 33 1 5.1888 2.3354 -0.1641 34 1 2.7428 2.9621 -1.8538 35 1 5.1059 0.2467 -2.0937 36 1 6.6391 -0.1150 -3.9814 37 1 6.6390 1.4293 -5.8900 38 1 7.0022 4.4727 -8.6104 39 1 3.5247 3.7299 -4.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313480468.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:29 Heat of formation + Delta-G solvation = -50.913573 kcal Electronic energy + Delta-G solvation = -19402.107498 eV Core-core repulsion = 16500.963570 eV Total energy + Delta-G solvation = -2901.143928 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.64120 -39.39402 -37.35188 -35.72521 -34.53214 -32.05355 -30.43240 -29.19626 -28.03267 -26.95910 -26.55677 -22.94709 -22.61238 -21.61267 -20.90097 -19.33614 -18.02623 -17.55104 -17.47020 -16.49793 -16.24814 -16.19266 -15.51622 -15.44747 -14.85538 -14.84320 -14.39882 -14.20546 -13.93280 -13.45617 -13.34751 -12.95875 -12.93433 -12.57591 -12.47711 -12.30672 -12.09700 -11.95463 -11.78118 -11.54886 -11.52983 -11.32177 -11.08091 -10.69491 -10.43156 -9.46965 -8.86510 -8.08593 -6.48878 0.86788 1.10325 1.30565 1.44733 1.53992 2.18189 2.41906 2.68120 3.06590 3.53054 3.60540 3.72505 3.99433 4.25477 4.36171 4.41210 4.47790 4.52002 4.56622 4.63171 4.70009 4.73210 4.78036 4.85845 4.90816 4.99219 5.02605 5.10736 5.16280 5.21740 5.24856 5.40290 5.54890 5.78724 5.87254 6.00921 6.10063 6.26056 6.39758 6.70153 6.83351 6.90114 7.09210 8.22496 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033191 B = 0.004602 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.393667 B = 6082.353037 C = 6283.581064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.402 6.402 3 C 0.080 3.920 4 H 0.071 0.929 5 C -0.134 4.134 6 C -0.115 4.115 7 C -0.136 4.136 8 C 0.149 3.851 9 H 0.074 0.926 10 N -0.740 5.740 11 C 0.246 3.754 12 C -0.289 4.289 13 C -0.048 4.048 14 C -0.293 4.293 15 C 0.107 3.893 16 C -0.490 4.490 17 H 0.052 0.948 18 C 0.050 3.950 19 N -0.855 5.855 20 Si 0.971 3.029 21 H -0.260 1.260 22 H -0.279 1.279 23 H -0.255 1.255 24 C -0.295 4.295 25 H 0.039 0.961 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.396 0.604 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.092 0.908 38 H 0.292 0.708 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.158 -5.761 19.284 21.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.322 6.322 3 C 0.021 3.979 4 H 0.089 0.911 5 C -0.172 4.172 6 C -0.153 4.153 7 C -0.175 4.175 8 C 0.044 3.956 9 H 0.092 0.908 10 N -0.372 5.372 11 C 0.144 3.856 12 C -0.312 4.312 13 C -0.067 4.067 14 C -0.313 4.313 15 C 0.104 3.896 16 C -0.519 4.519 17 H 0.070 0.930 18 C -0.164 4.164 19 N -0.481 5.481 20 Si 0.795 3.205 21 H -0.186 1.186 22 H -0.206 1.206 23 H -0.179 1.179 24 C -0.319 4.319 25 H 0.058 0.942 26 H 0.115 0.885 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.231 0.769 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.969 -5.967 19.159 20.935 hybrid contribution 0.022 0.682 -0.685 0.967 sum -5.947 -5.284 18.474 20.114 Atomic orbital electron populations 1.22957 0.79661 1.03799 1.00626 1.87899 1.21293 1.27810 1.95153 1.23062 0.93618 0.84732 0.96475 0.91103 1.22803 0.98384 1.00781 0.95206 1.22424 0.95161 0.98388 0.99300 1.22827 0.97487 1.00601 0.96544 1.21455 0.94422 0.93591 0.86161 0.90806 1.44622 1.42459 1.31503 1.18589 1.17561 0.88983 0.92515 0.86509 1.20341 1.05464 1.02744 1.02608 1.20753 0.96465 0.97027 0.92458 1.20951 1.08336 1.00402 1.01660 1.17592 0.90615 0.90700 0.90686 1.19442 0.97437 1.24279 1.10791 0.92987 1.26793 1.04553 0.91817 0.93244 1.69734 1.32860 1.35646 1.09903 0.85410 0.76308 0.78086 0.80699 1.18557 1.20624 1.17896 1.20500 1.10539 1.04275 0.96607 0.94183 0.88520 0.92440 0.89715 0.89989 0.91495 0.89696 0.90153 0.92383 0.76898 0.86184 0.85765 0.89049 0.89732 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.85 113.37 1.23 1.66 16 2 O -0.40 -9.45 10.26 -148.98 -1.53 -10.98 16 3 C 0.08 1.72 3.15 31.32 0.10 1.82 16 4 H 0.07 1.47 7.27 -2.39 -0.02 1.46 16 5 C -0.13 -2.21 6.56 31.67 0.21 -2.00 16 6 C -0.12 -2.04 6.91 31.93 0.22 -1.82 16 7 C -0.14 -3.15 6.55 31.71 0.21 -2.95 16 8 C 0.15 3.99 2.72 45.72 0.12 4.11 16 9 H 0.07 2.25 6.28 -2.39 -0.01 2.23 16 10 N -0.74 -23.67 5.21 -315.70 -1.64 -25.32 16 11 C 0.25 10.17 6.64 38.16 0.25 10.42 16 12 C -0.29 -11.69 9.22 22.59 0.21 -11.48 16 13 C -0.05 -2.08 10.02 22.20 0.22 -1.86 16 14 C -0.29 -14.61 7.17 22.75 0.16 -14.44 16 15 C 0.11 5.77 5.10 -21.31 -0.11 5.66 16 16 C -0.49 -28.83 9.57 23.46 0.22 -28.61 16 17 H 0.05 3.29 8.06 -2.91 -0.02 3.26 16 18 C 0.05 2.79 5.40 85.25 0.46 3.25 16 19 N -0.85 -48.68 13.93 21.82 0.30 -48.37 16 20 Si 0.97 45.11 24.52 68.60 1.68 46.79 16 21 H -0.26 -11.47 6.71 99.48 0.67 -10.80 16 22 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.26 -12.16 6.86 99.48 0.68 -11.48 16 24 C -0.30 -14.26 9.63 22.86 0.22 -14.04 16 25 H 0.04 0.68 8.10 -2.38 -0.02 0.66 16 26 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.06 1.61 8.04 -2.39 -0.02 1.59 16 34 H 0.40 11.50 8.31 -92.71 -0.77 10.73 16 35 H 0.12 4.23 6.22 -2.91 -0.02 4.22 16 36 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 37 H 0.09 4.57 4.72 -2.91 -0.01 4.56 16 38 H 0.29 14.94 8.30 -92.71 -0.77 14.17 16 39 H 0.09 4.46 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -64.28 312.43 2.75 -61.52 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.21 Total: 26.64 kcal Atomic # 6 Polarization: -54.02 SS G_CDS: 3.73 Total: -50.29 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -1.34 Total: -73.69 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -1.53 Total: -10.98 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.68 Total: 46.79 kcal Total: -64.28 2.75 -61.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313480468.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.611 kcal (2) G-P(sol) polarization free energy of solvation -64.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds