Wall clock time and date at job start Mon Mar 30 2020 06:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99793 * 2 1 4 4 H 1.09002 * 110.01506 * 28.61322 * 3 2 1 5 5 C 1.54262 * 110.03387 * 267.16717 * 3 2 1 6 6 C 1.54894 * 104.19540 * 217.10790 * 5 3 2 7 7 C 1.54889 * 102.74784 * 37.94286 * 6 5 3 8 8 C 1.53876 * 110.02945 * 149.99961 * 3 2 1 9 9 H 1.09003 * 110.03154 * 0.02562 * 8 3 2 10 10 N 1.46500 * 110.03006 * 238.57234 * 8 3 2 11 11 C 1.39691 * 119.99756 * 155.00302 * 10 8 3 12 12 C 1.39336 * 119.95093 * 359.97438 * 11 10 8 13 13 C 1.38483 * 120.41969 * 179.97438 * 12 11 10 14 14 C 1.37684 * 120.32427 * 0.02562 * 13 12 11 15 15 C 1.40750 * 119.89834 * 359.97357 * 14 13 12 16 16 C 1.41407 * 120.21079 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00174 * 150.21251 * 16 15 14 18 18 C 1.39929 * 119.99668 * 330.21191 * 16 15 14 19 19 N 1.30837 * 119.99779 * 161.72238 * 18 16 15 20 20 Si 1.86803 * 120.00350 * 341.72543 * 18 16 15 21 21 H 1.48497 * 109.47343 * 95.41116 * 20 18 16 22 22 H 1.48505 * 109.46828 * 215.41294 * 20 18 16 23 23 H 1.48497 * 109.46800 * 335.40727 * 20 18 16 24 24 C 1.38277 * 119.94931 * 179.72032 * 11 10 8 25 25 H 1.09001 * 109.47331 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47295 * 300.00057 * 1 2 3 27 27 H 1.09002 * 109.46940 * 59.99967 * 1 2 3 28 28 H 1.09004 * 110.48515 * 335.78281 * 5 3 2 29 29 H 1.08998 * 110.48709 * 98.42754 * 5 3 2 30 30 H 1.08999 * 110.75092 * 279.62939 * 6 5 3 31 31 H 1.09000 * 110.91471 * 156.32688 * 6 5 3 32 32 H 1.09003 * 110.48398 * 203.38471 * 7 6 5 33 33 H 1.09000 * 110.48708 * 80.73682 * 7 6 5 34 34 H 0.97001 * 120.00001 * 334.99578 * 10 8 3 35 35 H 1.07993 * 119.78534 * 0.02562 * 12 11 10 36 36 H 1.07994 * 119.83394 * 179.97438 * 13 12 11 37 37 H 1.07998 * 120.05154 * 179.97438 * 14 13 12 38 38 H 0.96999 * 120.00133 * 180.02562 * 19 18 16 39 39 H 1.08001 * 120.16132 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3406 2.0120 0.4905 5 6 2.2906 1.7592 -1.4475 6 6 3.6253 2.5389 -1.3494 7 6 4.4266 1.7156 -0.3107 8 6 3.3683 1.2778 0.7229 9 1 3.5843 0.2684 1.0732 10 7 3.3545 2.2101 1.8528 11 6 4.2115 2.0064 2.9369 12 6 5.0786 0.9157 2.9428 13 6 5.9327 0.7048 4.0123 14 6 5.9337 1.5710 5.0825 15 6 5.0633 2.6771 5.0907 16 6 5.0592 3.5712 6.1862 17 1 4.8036 4.6095 6.0348 18 6 5.3864 3.1106 7.4663 19 7 5.7326 3.9607 8.3987 20 14 5.3292 1.2821 7.8441 21 1 6.6861 0.7007 7.6837 22 1 4.8657 1.0795 9.2404 23 1 4.3900 0.6127 6.9088 24 6 4.2017 2.8903 4.0003 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.4007 0.8955 -2.1034 29 1 1.4932 2.4111 -1.8042 30 1 3.4543 3.5534 -0.9894 31 1 4.1392 2.5531 -2.3105 32 1 5.1880 2.3358 0.1624 33 1 4.8817 0.8449 -0.7830 34 1 2.7503 2.9690 1.8480 35 1 5.0853 0.2311 2.1076 36 1 6.6006 -0.1439 4.0072 37 1 6.6013 1.4020 5.9144 38 1 5.9598 3.6415 9.2860 39 1 3.5326 3.7380 3.9951 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313480472.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:36 Heat of formation + Delta-G solvation = -33.075480 kcal Electronic energy + Delta-G solvation = -19401.339179 eV Core-core repulsion = 16500.968769 eV Total energy + Delta-G solvation = -2900.370410 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.48878 -37.80472 -36.20531 -34.06875 -32.84824 -30.15460 -28.96645 -28.28579 -26.89040 -25.53959 -25.00023 -21.32185 -21.01266 -20.56283 -19.51417 -17.61798 -16.75646 -16.31189 -15.77580 -15.37753 -14.68612 -14.59584 -14.43835 -14.12602 -13.92129 -13.23070 -12.61693 -12.54236 -12.34281 -12.31317 -11.89203 -11.66913 -11.49579 -11.33443 -11.06145 -10.84332 -10.79630 -10.66981 -10.52072 -10.35488 -9.72387 -9.69233 -9.45949 -9.21065 -8.83934 -7.55238 -6.85013 -6.43328 -4.40649 2.74204 2.95818 3.21482 3.31303 3.43549 3.51228 4.09679 4.23736 4.48047 4.59706 4.69109 4.93013 5.09507 5.22051 5.23299 5.44647 5.47661 5.55374 5.57863 5.63038 5.72238 5.80851 5.89236 6.03181 6.12174 6.23305 6.31543 6.41663 6.63205 6.84117 6.89598 7.02897 7.14518 7.35710 7.62044 7.73848 7.85006 8.03816 8.39455 8.46497 8.54529 8.82284 8.95576 10.17951 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.030829 B = 0.004656 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.015786 B = 6012.000279 C = 6203.216641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.077 3.923 4 H 0.067 0.933 5 C -0.144 4.144 6 C -0.121 4.121 7 C -0.137 4.137 8 C 0.156 3.844 9 H 0.091 0.909 10 N -0.751 5.751 11 C 0.237 3.763 12 C -0.299 4.299 13 C -0.048 4.048 14 C -0.272 4.272 15 C 0.125 3.875 16 C -0.452 4.452 17 H 0.087 0.913 18 C 0.086 3.914 19 N -0.815 5.815 20 Si 0.914 3.086 21 H -0.272 1.272 22 H -0.295 1.295 23 H -0.244 1.244 24 C -0.277 4.277 25 H 0.084 0.916 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.388 0.612 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.283 0.717 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.185 -5.147 -15.490 17.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C 0.019 3.981 4 H 0.085 0.915 5 C -0.182 4.182 6 C -0.159 4.159 7 C -0.176 4.176 8 C 0.049 3.951 9 H 0.109 0.891 10 N -0.384 5.384 11 C 0.138 3.862 12 C -0.321 4.321 13 C -0.067 4.067 14 C -0.292 4.292 15 C 0.122 3.878 16 C -0.481 4.481 17 H 0.105 0.895 18 C -0.132 4.132 19 N -0.439 5.439 20 Si 0.741 3.259 21 H -0.198 1.198 22 H -0.223 1.223 23 H -0.168 1.168 24 C -0.301 4.301 25 H 0.102 0.898 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.221 0.779 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.968 -5.360 -15.327 17.669 hybrid contribution -0.434 -0.161 0.324 0.565 sum -7.401 -5.521 -15.002 17.616 Atomic orbital electron populations 1.22771 0.81320 1.02611 0.99818 1.87939 1.19452 1.27511 1.94961 1.23115 0.95040 0.84630 0.95332 0.91463 1.22855 0.98102 1.00423 0.96800 1.22416 0.95230 0.98907 0.99304 1.22857 0.98259 1.00092 0.96402 1.21247 0.91950 0.95249 0.86625 0.89078 1.44552 1.44826 1.30316 1.18688 1.17522 0.89003 0.93722 0.85985 1.19952 1.07170 1.02721 1.02265 1.20373 0.96181 0.96663 0.93504 1.20893 1.06114 1.01778 1.00395 1.17439 0.87964 0.90344 0.92077 1.19442 1.40007 0.97665 0.90970 0.89457 1.26130 0.90414 1.00578 0.96080 1.69713 1.32055 1.37723 1.04457 0.86277 0.80177 0.82659 0.76739 1.19795 1.22261 1.16758 1.20386 1.07933 1.03902 0.97923 0.89761 0.93957 0.94310 0.90444 0.91695 0.91429 0.91504 0.90308 0.91263 0.77861 0.88832 0.89054 0.88598 0.90662 0.88615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.85 101.05 1.10 1.40 16 2 O -0.38 -5.00 10.26 -35.23 -0.36 -5.36 16 3 C 0.08 0.95 3.15 -25.61 -0.08 0.87 16 4 H 0.07 0.80 7.28 -51.93 -0.38 0.42 16 5 C -0.14 -1.46 6.56 -25.07 -0.16 -1.63 16 6 C -0.12 -1.27 6.91 -24.74 -0.17 -1.44 16 7 C -0.14 -1.77 6.54 -25.07 -0.16 -1.93 16 8 C 0.16 2.27 2.75 -66.81 -0.18 2.09 16 9 H 0.09 1.51 6.24 -51.93 -0.32 1.18 16 10 N -0.75 -12.66 5.20 -51.13 -0.27 -12.93 16 11 C 0.24 5.03 6.64 -83.85 -0.56 4.47 16 12 C -0.30 -6.39 9.22 -39.08 -0.36 -6.76 16 13 C -0.05 -1.09 10.02 -39.69 -0.40 -1.49 16 14 C -0.27 -6.81 7.17 -38.84 -0.28 -7.09 16 15 C 0.13 3.29 5.10 -106.85 -0.55 2.74 16 16 C -0.45 -12.62 9.57 -37.74 -0.36 -12.98 16 17 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 18 C 0.09 2.33 5.40 -17.34 -0.09 2.24 16 19 N -0.81 -22.35 13.93 55.55 0.77 -21.57 16 20 Si 0.91 21.70 24.52 -169.99 -4.17 17.53 16 21 H -0.27 -6.27 6.71 56.52 0.38 -5.89 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.24 -5.98 6.86 56.52 0.39 -5.60 16 24 C -0.28 -6.62 9.63 -38.68 -0.37 -6.99 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.41 8.10 -51.93 -0.42 -0.01 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.78 8.08 -51.93 -0.42 0.37 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.16 8.04 -51.93 -0.42 0.75 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.39 5.93 8.33 -40.82 -0.34 5.59 16 35 H 0.09 1.81 6.20 -52.49 -0.33 1.49 16 36 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.10 2.41 4.72 -52.49 -0.25 2.16 16 38 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 39 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 312.40 15.07 4.71 4.71 Total: -1.00 -28.99 312.40 -7.80 -36.78 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -5.85 Total: 7.33 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: -2.63 Total: -26.49 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.51 Total: -34.50 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.36 Total: -5.36 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.17 Total: 17.53 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.99 -7.80 -36.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313480472.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.708 kcal (2) G-P(sol) polarization free energy of solvation -28.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds