Wall clock time and date at job start Mon Mar 30 2020 06:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99793 * 2 1 4 4 H 1.09002 * 110.01506 * 28.61322 * 3 2 1 5 5 C 1.54262 * 110.03387 * 267.16717 * 3 2 1 6 6 C 1.54894 * 104.19540 * 217.10790 * 5 3 2 7 7 C 1.54889 * 102.74784 * 37.94286 * 6 5 3 8 8 C 1.53876 * 110.02945 * 149.99961 * 3 2 1 9 9 H 1.09003 * 110.03154 * 0.02562 * 8 3 2 10 10 N 1.46500 * 110.03006 * 238.57234 * 8 3 2 11 11 C 1.39691 * 119.99756 * 155.00302 * 10 8 3 12 12 C 1.39336 * 119.95093 * 359.97438 * 11 10 8 13 13 C 1.38483 * 120.41969 * 179.97438 * 12 11 10 14 14 C 1.37684 * 120.32427 * 0.02562 * 13 12 11 15 15 C 1.40750 * 119.89834 * 359.97357 * 14 13 12 16 16 C 1.41407 * 120.21079 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00174 * 150.21251 * 16 15 14 18 18 C 1.39929 * 119.99668 * 330.21191 * 16 15 14 19 19 N 1.30837 * 119.99779 * 161.72238 * 18 16 15 20 20 Si 1.86803 * 120.00350 * 341.72543 * 18 16 15 21 21 H 1.48497 * 109.47343 * 95.41116 * 20 18 16 22 22 H 1.48505 * 109.46828 * 215.41294 * 20 18 16 23 23 H 1.48497 * 109.46800 * 335.40727 * 20 18 16 24 24 C 1.38277 * 119.94931 * 179.72032 * 11 10 8 25 25 H 1.09001 * 109.47331 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47295 * 300.00057 * 1 2 3 27 27 H 1.09002 * 109.46940 * 59.99967 * 1 2 3 28 28 H 1.09004 * 110.48515 * 335.78281 * 5 3 2 29 29 H 1.08998 * 110.48709 * 98.42754 * 5 3 2 30 30 H 1.08999 * 110.75092 * 279.62939 * 6 5 3 31 31 H 1.09000 * 110.91471 * 156.32688 * 6 5 3 32 32 H 1.09003 * 110.48398 * 203.38471 * 7 6 5 33 33 H 1.09000 * 110.48708 * 80.73682 * 7 6 5 34 34 H 0.97001 * 120.00001 * 334.99578 * 10 8 3 35 35 H 1.07993 * 119.78534 * 0.02562 * 12 11 10 36 36 H 1.07994 * 119.83394 * 179.97438 * 13 12 11 37 37 H 1.07998 * 120.05154 * 179.97438 * 14 13 12 38 38 H 0.96999 * 120.00133 * 180.02562 * 19 18 16 39 39 H 1.08001 * 120.16132 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3406 2.0120 0.4905 5 6 2.2906 1.7592 -1.4475 6 6 3.6253 2.5389 -1.3494 7 6 4.4266 1.7156 -0.3107 8 6 3.3683 1.2778 0.7229 9 1 3.5843 0.2684 1.0732 10 7 3.3545 2.2101 1.8528 11 6 4.2115 2.0064 2.9369 12 6 5.0786 0.9157 2.9428 13 6 5.9327 0.7048 4.0123 14 6 5.9337 1.5710 5.0825 15 6 5.0633 2.6771 5.0907 16 6 5.0592 3.5712 6.1862 17 1 4.8036 4.6095 6.0348 18 6 5.3864 3.1106 7.4663 19 7 5.7326 3.9607 8.3987 20 14 5.3292 1.2821 7.8441 21 1 6.6861 0.7007 7.6837 22 1 4.8657 1.0795 9.2404 23 1 4.3900 0.6127 6.9088 24 6 4.2017 2.8903 4.0003 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.4007 0.8955 -2.1034 29 1 1.4932 2.4111 -1.8042 30 1 3.4543 3.5534 -0.9894 31 1 4.1392 2.5531 -2.3105 32 1 5.1880 2.3358 0.1624 33 1 4.8817 0.8449 -0.7830 34 1 2.7503 2.9690 1.8480 35 1 5.0853 0.2311 2.1076 36 1 6.6006 -0.1439 4.0072 37 1 6.6013 1.4020 5.9144 38 1 5.9598 3.6415 9.2860 39 1 3.5326 3.7380 3.9951 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313480472.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:35 Heat of formation + Delta-G solvation = -50.935984 kcal Electronic energy + Delta-G solvation = -19402.113668 eV Core-core repulsion = 16500.968769 eV Total energy + Delta-G solvation = -2901.144900 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.64185 -39.39522 -37.35293 -35.72846 -34.53363 -32.05455 -30.43184 -29.19739 -28.03068 -26.96222 -26.55811 -22.94634 -22.61413 -21.61410 -20.89953 -19.33511 -18.03416 -17.54659 -17.47314 -16.48726 -16.25793 -16.19003 -15.51354 -15.45103 -14.88607 -14.82919 -14.40143 -14.20889 -13.92750 -13.46873 -13.32515 -12.96453 -12.93221 -12.58096 -12.47399 -12.26802 -12.15453 -11.96757 -11.76575 -11.54678 -11.52768 -11.32814 -11.06859 -10.71792 -10.41871 -9.47081 -8.86912 -8.08689 -6.48934 0.86553 1.10235 1.30029 1.44187 1.53367 2.17617 2.42000 2.67737 3.06631 3.52737 3.61620 3.72132 3.99436 4.25457 4.35996 4.41079 4.47869 4.51890 4.56679 4.63310 4.70082 4.73405 4.78110 4.85693 4.90862 4.99323 5.02605 5.10717 5.16580 5.21555 5.25037 5.40306 5.54818 5.78737 5.87139 6.00903 6.09974 6.26040 6.39600 6.70073 6.83225 6.90067 7.09213 8.22078 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.030829 B = 0.004656 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.015786 B = 6012.000279 C = 6203.216641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.403 6.403 3 C 0.079 3.921 4 H 0.071 0.929 5 C -0.134 4.134 6 C -0.115 4.115 7 C -0.135 4.135 8 C 0.149 3.851 9 H 0.074 0.926 10 N -0.740 5.740 11 C 0.246 3.754 12 C -0.289 4.289 13 C -0.048 4.048 14 C -0.293 4.293 15 C 0.107 3.893 16 C -0.489 4.489 17 H 0.053 0.947 18 C 0.050 3.950 19 N -0.854 5.854 20 Si 0.970 3.030 21 H -0.259 1.259 22 H -0.279 1.279 23 H -0.257 1.257 24 C -0.295 4.295 25 H 0.096 0.904 26 H 0.039 0.961 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.396 0.604 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.092 0.908 38 H 0.292 0.708 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.909 -7.154 -18.120 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.322 6.322 3 C 0.021 3.979 4 H 0.089 0.911 5 C -0.172 4.172 6 C -0.153 4.153 7 C -0.174 4.174 8 C 0.043 3.957 9 H 0.092 0.908 10 N -0.372 5.372 11 C 0.144 3.856 12 C -0.312 4.312 13 C -0.067 4.067 14 C -0.314 4.314 15 C 0.104 3.896 16 C -0.519 4.519 17 H 0.071 0.929 18 C -0.164 4.164 19 N -0.481 5.481 20 Si 0.794 3.206 21 H -0.185 1.185 22 H -0.206 1.206 23 H -0.181 1.181 24 C -0.319 4.319 25 H 0.115 0.885 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.231 0.769 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.714 -7.357 -17.995 20.916 hybrid contribution -0.293 0.423 0.884 1.023 sum -8.007 -6.934 -17.111 20.125 Atomic orbital electron populations 1.22956 0.79669 1.03792 1.00626 1.87900 1.21291 1.27829 1.95156 1.23077 0.93648 0.84726 0.96481 0.91109 1.22801 0.98380 1.00782 0.95196 1.22403 0.95168 0.98391 0.99325 1.22798 0.97481 1.00603 0.96506 1.21459 0.94419 0.93615 0.86177 0.90783 1.44621 1.43552 1.30888 1.18105 1.17564 0.89053 0.92708 0.86247 1.20341 1.05847 1.02513 1.02485 1.20750 0.96437 0.96931 0.92582 1.20951 1.06498 1.02352 1.01569 1.17593 0.88888 0.90864 0.92253 1.19445 1.42985 0.96710 0.92757 0.92916 1.26780 0.89876 1.04202 0.95503 1.69736 1.33757 1.39356 1.05228 0.85426 0.80322 0.78024 0.76818 1.18480 1.20613 1.18081 1.20493 1.08134 1.04756 0.98543 0.88531 0.94191 0.92429 0.89994 0.89708 0.91524 0.89684 0.92344 0.90164 0.76889 0.86186 0.85772 0.89052 0.89728 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.85 113.37 1.23 1.66 16 2 O -0.40 -9.49 10.26 -148.98 -1.53 -11.02 16 3 C 0.08 1.72 3.15 31.32 0.10 1.82 16 4 H 0.07 1.48 7.28 -2.39 -0.02 1.46 16 5 C -0.13 -2.21 6.56 31.67 0.21 -2.00 16 6 C -0.12 -2.04 6.91 31.89 0.22 -1.82 16 7 C -0.13 -3.12 6.54 31.67 0.21 -2.91 16 8 C 0.15 3.98 2.75 45.72 0.13 4.10 16 9 H 0.07 2.26 6.24 -2.39 -0.01 2.24 16 10 N -0.74 -23.67 5.20 -315.68 -1.64 -25.32 16 11 C 0.25 10.17 6.64 38.16 0.25 10.42 16 12 C -0.29 -11.71 9.22 22.59 0.21 -11.50 16 13 C -0.05 -2.08 10.02 22.20 0.22 -1.86 16 14 C -0.29 -14.63 7.17 22.75 0.16 -14.46 16 15 C 0.11 5.76 5.10 -21.31 -0.11 5.66 16 16 C -0.49 -28.78 9.57 23.46 0.22 -28.56 16 17 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 18 C 0.05 2.82 5.40 85.25 0.46 3.28 16 19 N -0.85 -48.61 13.93 21.82 0.30 -48.31 16 20 Si 0.97 45.27 24.52 68.60 1.68 46.95 16 21 H -0.26 -11.46 6.71 99.48 0.67 -10.80 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 23 H -0.26 -12.37 6.86 99.48 0.68 -11.69 16 24 C -0.30 -14.26 9.63 22.86 0.22 -14.04 16 25 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.04 0.68 8.10 -2.39 -0.02 0.66 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.08 1.33 8.08 -2.38 -0.02 1.31 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.60 8.04 -2.39 -0.02 1.58 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.40 11.50 8.33 -92.71 -0.77 10.73 16 35 H 0.12 4.24 6.20 -2.91 -0.02 4.22 16 36 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 37 H 0.09 4.57 4.72 -2.91 -0.01 4.56 16 38 H 0.29 14.94 8.30 -92.71 -0.77 14.17 16 39 H 0.09 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -64.23 312.40 2.75 -61.48 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.21 Total: 26.44 kcal Atomic # 6 Polarization: -53.95 SS G_CDS: 3.73 Total: -50.22 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -1.34 Total: -73.63 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -1.53 Total: -11.02 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.68 Total: 46.95 kcal Total: -64.23 2.75 -61.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313480472.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.541 kcal (2) G-P(sol) polarization free energy of solvation -64.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds