Wall clock time and date at job start Mon Mar 30 2020 06:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35902 * 116.99504 * 2 1 4 4 C 1.38760 * 120.17927 * 0.02562 * 3 2 1 5 5 C 1.37831 * 119.71350 * 180.13950 * 4 3 2 6 6 C 1.38958 * 120.62613 * 359.94054 * 5 4 3 7 7 C 1.37709 * 119.76943 * 359.83278 * 6 5 4 8 8 C 1.38432 * 120.16982 * 180.02562 * 3 2 1 9 9 C 1.50639 * 122.56554 * 180.69020 * 7 6 5 10 10 C 1.52719 * 110.61586 * 342.22409 * 9 7 6 11 11 C 1.53320 * 108.38374 * 51.07040 * 10 9 7 12 12 C 1.50655 * 117.69696 * 179.78413 * 6 5 4 13 13 H 1.08998 * 109.25305 * 282.54900 * 12 6 5 14 14 N 1.46498 * 109.24844 * 41.96976 * 12 6 5 15 15 C 1.46499 * 120.00157 * 61.11687 * 14 12 6 16 16 C 1.36943 * 120.00149 * 241.10774 * 14 12 6 17 17 H 1.07995 * 119.99841 * 22.96764 * 16 14 12 18 18 C 1.38810 * 120.00288 * 202.96773 * 16 14 12 19 19 N 1.31625 * 119.99586 * 11.60923 * 18 16 14 20 20 Si 1.86794 * 120.00289 * 191.61305 * 18 16 14 21 21 H 1.48501 * 109.46743 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47242 * 119.99831 * 20 18 16 23 23 H 1.48495 * 109.47466 * 240.00076 * 20 18 16 24 24 H 1.09003 * 109.47152 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47092 * 300.00068 * 1 2 3 26 26 H 1.08998 * 109.47024 * 60.00010 * 1 2 3 27 27 H 1.07995 * 120.14369 * 0.11693 * 4 3 2 28 28 H 1.07996 * 119.68632 * 179.97438 * 5 4 3 29 29 H 1.08003 * 119.74713 * 0.02892 * 8 3 2 30 30 H 1.09001 * 109.25997 * 102.48531 * 9 7 6 31 31 H 1.09004 * 109.25050 * 221.95497 * 9 7 6 32 32 H 1.08998 * 109.65892 * 291.36264 * 10 9 7 33 33 H 1.09003 * 109.70815 * 170.80269 * 10 9 7 34 34 H 1.08994 * 109.68480 * 170.42213 * 11 10 9 35 35 H 1.09004 * 109.68476 * 49.90310 * 11 10 9 36 36 H 1.08997 * 109.47786 * 93.87655 * 15 14 12 37 37 H 1.09001 * 109.47342 * 213.87931 * 15 14 12 38 38 H 1.09000 * 109.46855 * 333.87249 * 15 14 12 39 39 H 0.97006 * 119.99445 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2937 2.3770 0.0005 5 6 1.9293 3.6000 -0.0024 6 6 3.3168 3.6767 -0.0046 7 6 4.0655 2.5210 -0.0004 8 6 3.4281 1.2876 -0.0005 9 6 5.5718 2.5307 0.0128 10 6 6.1045 3.8962 -0.4162 11 6 5.4047 4.9730 0.4213 12 6 3.9423 5.0473 -0.0128 13 1 3.8868 5.4617 -1.0194 14 7 3.2085 5.9185 0.9084 15 6 3.1418 5.5869 2.3339 16 6 2.5850 7.0430 0.4372 17 1 2.3070 7.1101 -0.6042 18 6 2.3104 8.0968 1.2981 19 7 2.8437 8.1197 2.5012 20 14 1.1838 9.4820 0.7492 21 1 0.7182 9.2216 -0.6367 22 1 0.0129 9.5579 1.6593 23 1 1.9253 10.7680 0.7883 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2149 2.3264 0.0029 28 1 1.3434 4.5072 -0.0024 29 1 4.0151 0.3810 -0.0014 30 1 5.9239 2.3085 1.0201 31 1 5.9421 1.7691 -0.6736 32 1 5.8918 4.0572 -1.4730 33 1 7.1803 3.9408 -0.2466 34 1 5.8859 5.9369 0.2561 35 1 5.4611 4.7108 1.4778 36 1 3.9405 6.1045 2.8652 37 1 2.1773 5.8986 2.7347 38 1 3.2579 4.5107 2.4623 39 1 2.6520 8.8563 3.1027 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334452927.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:43 Heat of formation + Delta-G solvation = -12.950080 kcal Electronic energy + Delta-G solvation = -20091.657178 eV Core-core repulsion = 17192.159471 eV Total energy + Delta-G solvation = -2899.497707 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.36146 -39.66115 -37.17175 -35.84096 -33.68663 -31.72965 -30.48180 -29.52022 -27.99772 -27.64899 -25.27897 -23.72985 -23.16325 -22.06762 -20.08772 -18.87075 -18.43242 -17.25975 -16.88202 -16.69253 -16.54510 -15.76386 -15.46117 -15.16782 -14.80900 -14.33646 -14.21268 -14.00443 -13.71754 -13.61526 -13.24950 -12.95424 -12.81747 -12.73957 -12.57692 -12.43673 -12.13297 -12.02677 -11.87878 -11.70358 -11.56125 -11.28555 -11.12423 -10.64003 -9.60419 -8.96049 -8.72076 -7.81456 -5.28683 0.46565 0.56972 1.44911 1.46270 1.56334 2.41753 2.50247 2.85461 3.32687 3.67094 3.89201 3.97166 4.03877 4.22490 4.28268 4.30442 4.38145 4.39836 4.51352 4.66647 4.70699 4.75273 4.79432 4.86593 4.91231 5.09471 5.12714 5.17939 5.27424 5.29645 5.30744 5.47176 5.53744 5.60829 5.68758 5.73268 5.89109 5.98486 6.35313 6.52499 7.17009 7.89096 8.35059 9.22708 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.020113 B = 0.006597 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.831496 B = 4243.468325 C = 5233.986962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.331 6.331 3 C 0.114 3.886 4 C -0.218 4.218 5 C -0.070 4.070 6 C -0.128 4.128 7 C -0.041 4.041 8 C -0.166 4.166 9 C -0.074 4.074 10 C -0.108 4.108 11 C -0.122 4.122 12 C 0.212 3.788 13 H 0.059 0.941 14 N -0.602 5.602 15 C 0.193 3.807 16 C -0.257 4.257 17 H 0.069 0.931 18 C -0.052 4.052 19 N -0.939 5.939 20 Si 0.966 3.034 21 H -0.267 1.267 22 H -0.293 1.293 23 H -0.292 1.292 24 H 0.124 0.876 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.137 0.863 28 H 0.106 0.894 29 H 0.145 0.855 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.001 0.999 37 H 0.012 0.988 38 H 0.013 0.987 39 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.726 -15.583 -6.025 16.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.246 6.246 3 C 0.069 3.931 4 C -0.237 4.237 5 C -0.088 4.088 6 C -0.130 4.130 7 C -0.041 4.041 8 C -0.185 4.185 9 C -0.110 4.110 10 C -0.146 4.146 11 C -0.162 4.162 12 C 0.105 3.895 13 H 0.077 0.923 14 N -0.324 5.324 15 C 0.048 3.952 16 C -0.387 4.387 17 H 0.087 0.913 18 C -0.247 4.247 19 N -0.586 5.586 20 Si 0.794 3.206 21 H -0.191 1.191 22 H -0.220 1.220 23 H -0.219 1.219 24 H 0.142 0.858 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.155 0.845 28 H 0.124 0.876 29 H 0.163 0.837 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.019 0.981 37 H 0.031 0.969 38 H 0.032 0.968 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.761 -15.649 -5.907 16.745 hybrid contribution -1.162 1.520 0.258 1.931 sum -0.400 -14.129 -5.649 15.222 Atomic orbital electron populations 1.23283 0.76913 1.05424 1.01797 1.86001 1.23061 1.26471 1.89025 1.18980 0.92702 0.84124 0.97298 1.21266 1.00518 0.91977 1.09943 1.21012 0.94843 0.96966 0.96000 1.20375 0.93760 0.95806 1.03105 1.19703 0.96845 0.90815 0.96760 1.20539 0.91383 0.98319 1.08224 1.20522 0.88945 0.98520 1.03062 1.21515 1.00241 0.93263 0.99555 1.21918 0.95877 0.98725 0.99642 1.19284 0.90344 0.86721 0.93125 0.92314 1.44096 1.59772 1.24733 1.03812 1.20276 0.97960 0.92720 0.84230 1.19566 1.30564 0.93364 0.95212 0.91333 1.25738 1.02012 0.99744 0.97187 1.70250 1.46846 1.32726 1.08814 0.85218 0.78272 0.79220 0.77849 1.19129 1.22001 1.21937 0.85788 0.92628 0.92193 0.84542 0.87603 0.83680 0.89910 0.88148 0.91497 0.89510 0.93523 0.93402 0.98074 0.96894 0.96813 0.94407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.82 113.37 1.11 1.48 16 2 O -0.33 -8.72 10.50 -92.45 -0.97 -9.69 16 3 C 0.11 3.45 6.68 22.44 0.15 3.60 16 4 C -0.22 -7.07 9.04 22.30 0.20 -6.87 16 5 C -0.07 -2.68 9.05 22.35 0.20 -2.48 16 6 C -0.13 -4.84 4.57 -19.83 -0.09 -4.93 16 7 C -0.04 -1.27 5.74 -19.87 -0.11 -1.38 16 8 C -0.17 -4.83 9.55 22.46 0.21 -4.61 16 9 C -0.07 -1.81 5.67 29.74 0.17 -1.64 16 10 C -0.11 -2.85 5.98 30.61 0.18 -2.67 16 11 C -0.12 -4.50 5.37 30.61 0.16 -4.33 16 12 C 0.21 8.91 2.58 44.14 0.11 9.02 16 13 H 0.06 2.55 7.85 -2.39 -0.02 2.53 16 14 N -0.60 -30.61 1.94 -707.59 -1.37 -31.99 16 15 C 0.19 10.05 7.68 127.77 0.98 11.03 16 16 C -0.26 -14.21 9.46 84.03 0.80 -13.42 16 17 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 18 C -0.05 -2.94 5.12 84.86 0.43 -2.51 16 19 N -0.94 -56.46 10.64 21.65 0.23 -56.23 16 20 Si 0.97 45.65 29.57 68.60 2.03 47.68 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 23 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 24 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.06 1.00 7.67 -2.39 -0.02 0.98 16 26 H 0.06 1.02 7.67 -2.39 -0.02 1.00 16 27 H 0.14 3.79 6.33 -2.91 -0.02 3.77 16 28 H 0.11 4.60 7.49 -2.91 -0.02 4.58 16 29 H 0.15 3.45 8.05 -2.91 -0.02 3.43 16 30 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16 31 H 0.10 1.89 8.13 -2.38 -0.02 1.87 16 32 H 0.07 1.72 8.10 -2.39 -0.02 1.70 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.05 1.87 7.35 -2.38 -0.02 1.85 16 36 H 0.00 0.06 7.42 -2.39 -0.02 0.04 16 37 H 0.01 0.70 7.22 -2.39 -0.02 0.69 16 38 H 0.01 0.64 7.32 -2.39 -0.02 0.62 16 39 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 Total: -1.00 -65.48 309.55 5.45 -60.03 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 1.02 Total: 9.93 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 4.52 Total: -19.71 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -1.14 Total: -88.22 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.97 Total: -9.69 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -65.48 5.45 -60.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334452927.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.077 kcal (2) G-P(sol) polarization free energy of solvation -65.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds