Wall clock time and date at job start Mon Mar 30 2020 06:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35905 * 116.99845 * 2 1 4 4 C 1.38756 * 120.17468 * 359.97438 * 3 2 1 5 5 C 1.37836 * 119.71341 * 179.88335 * 4 3 2 6 6 C 1.38960 * 120.62040 * 0.07799 * 5 4 3 7 7 C 1.37700 * 119.77179 * 0.16179 * 6 5 4 8 8 C 1.38426 * 120.17001 * 180.02562 * 3 2 1 9 9 C 1.50645 * 122.55994 * 179.31621 * 7 6 5 10 10 C 1.52735 * 110.58919 * 17.89872 * 9 7 6 11 11 C 1.53319 * 108.38167 * 308.85786 * 10 9 7 12 12 C 1.50650 * 117.68868 * 180.34811 * 6 5 4 13 13 H 1.09006 * 109.25423 * 77.42934 * 12 6 5 14 14 N 1.46502 * 109.25581 * 317.96954 * 12 6 5 15 15 C 1.46507 * 119.99505 * 299.99928 * 14 12 6 16 16 C 1.36933 * 120.00436 * 120.00144 * 14 12 6 17 17 H 1.08004 * 119.99551 * 23.16338 * 16 14 12 18 18 C 1.38814 * 120.00063 * 203.17059 * 16 14 12 19 19 N 1.31619 * 120.00011 * 13.95198 * 18 16 14 20 20 Si 1.86800 * 119.99825 * 193.95182 * 18 16 14 21 21 H 1.48500 * 109.47163 * 60.00047 * 20 18 16 22 22 H 1.48496 * 109.46994 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46905 * 299.99863 * 20 18 16 24 24 H 1.08997 * 109.46889 * 300.00398 * 1 2 3 25 25 H 1.09003 * 109.46927 * 59.99567 * 1 2 3 26 26 H 1.08994 * 109.46722 * 180.02562 * 1 2 3 27 27 H 1.08005 * 120.14508 * 359.85289 * 4 3 2 28 28 H 1.07993 * 119.68769 * 180.10489 * 5 4 3 29 29 H 1.07997 * 119.74712 * 359.66464 * 8 3 2 30 30 H 1.08999 * 109.25059 * 257.61604 * 9 7 6 31 31 H 1.08998 * 109.25324 * 138.18713 * 9 7 6 32 32 H 1.08994 * 109.68196 * 189.12856 * 10 9 7 33 33 H 1.09006 * 109.71076 * 68.59323 * 10 9 7 34 34 H 1.09002 * 109.67888 * 310.13603 * 11 10 9 35 35 H 1.08997 * 109.67706 * 189.58874 * 11 10 9 36 36 H 1.09000 * 109.46724 * 95.16166 * 15 14 12 37 37 H 1.08999 * 109.47081 * 215.15813 * 15 14 12 38 38 H 1.09002 * 109.47066 * 335.16548 * 15 14 12 39 39 H 0.96996 * 119.99986 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2939 2.3769 -0.0005 5 6 1.9294 3.6000 0.0019 6 6 3.3169 3.6766 0.0033 7 6 4.0655 2.5209 -0.0012 8 6 3.4282 1.2875 -0.0005 9 6 5.5719 2.5307 -0.0152 10 6 6.1042 3.8957 0.4164 11 6 5.4048 4.9738 -0.4198 12 6 3.9423 5.0471 0.0140 13 1 3.8872 5.4595 1.0216 14 7 3.2088 5.9201 -0.9058 15 6 3.1219 5.5781 -2.3277 16 6 2.6044 7.0558 -0.4366 17 1 2.9522 7.5143 0.4774 18 6 1.5448 7.6176 -1.1355 19 7 0.9422 6.9295 -2.0820 20 14 0.9743 9.3501 -0.7328 21 1 2.0926 10.3027 -0.9501 22 1 -0.1644 9.7136 -1.6140 23 1 0.5406 9.4112 0.6861 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 -1.0276 0.0005 27 1 0.2150 2.3264 -0.0034 28 1 1.3436 4.5072 0.0032 29 1 4.0151 0.3810 0.0045 30 1 5.9234 2.3102 -1.0231 31 1 5.9427 1.7676 0.6691 32 1 7.1800 3.9403 0.2475 33 1 5.8916 4.0557 1.4735 34 1 5.4615 4.7128 -1.4767 35 1 5.8861 5.9374 -0.2529 36 1 2.1934 5.0391 -2.5156 37 1 3.1388 6.4912 -2.9227 38 1 3.9690 4.9495 -2.6026 39 1 0.2016 7.3220 -2.5701 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334452928.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:46 Heat of formation + Delta-G solvation = 2.970251 kcal Electronic energy + Delta-G solvation = -20186.274496 eV Core-core repulsion = 17287.467146 eV Total energy + Delta-G solvation = -2898.807350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.96201 -38.31566 -35.47235 -34.40107 -31.85314 -30.08296 -29.12966 -28.06884 -26.49579 -25.91628 -23.61020 -22.19120 -21.79374 -20.47201 -18.66502 -17.27242 -16.70381 -15.87255 -15.46770 -15.24430 -14.96747 -14.15732 -13.87434 -13.67766 -13.43624 -12.85672 -12.67478 -12.41913 -12.20466 -12.00551 -11.91325 -11.52894 -11.41092 -11.02678 -10.86352 -10.67008 -10.50178 -10.41442 -10.21706 -10.15073 -9.88421 -9.79250 -9.56655 -8.52117 -8.18698 -7.49307 -6.72162 -5.70279 -3.17068 1.90487 2.05542 3.38999 3.44878 3.45830 3.57209 4.30527 4.52396 5.10434 5.21793 5.27081 5.30104 5.34655 5.39360 5.47536 5.56656 5.66746 5.69949 5.73778 5.86051 6.00843 6.08769 6.14868 6.25529 6.32754 6.41194 6.53389 6.63438 6.77325 6.84950 6.95169 7.00605 7.12365 7.33707 7.42819 7.47734 7.79632 7.83209 7.86735 8.41926 9.25583 9.89093 10.39885 11.32855 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018772 B = 0.007159 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.248312 B = 3909.954396 C = 5050.947807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.326 6.326 3 C 0.110 3.890 4 C -0.216 4.216 5 C -0.040 4.040 6 C -0.111 4.111 7 C -0.048 4.048 8 C -0.169 4.169 9 C -0.074 4.074 10 C -0.116 4.116 11 C -0.130 4.130 12 C 0.213 3.787 13 H 0.071 0.929 14 N -0.590 5.590 15 C 0.164 3.836 16 C -0.256 4.256 17 H 0.067 0.933 18 C 0.004 3.996 19 N -0.904 5.904 20 Si 0.902 3.098 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.284 1.284 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.092 0.908 27 H 0.118 0.882 28 H 0.141 0.859 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.030 0.970 37 H 0.037 0.963 38 H -0.001 1.001 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.227 -10.576 3.929 12.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.240 6.240 3 C 0.066 3.934 4 C -0.234 4.234 5 C -0.058 4.058 6 C -0.113 4.113 7 C -0.048 4.048 8 C -0.187 4.187 9 C -0.111 4.111 10 C -0.154 4.154 11 C -0.169 4.169 12 C 0.105 3.895 13 H 0.089 0.911 14 N -0.311 5.311 15 C 0.020 3.980 16 C -0.385 4.385 17 H 0.085 0.915 18 C -0.195 4.195 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.210 1.210 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.111 0.889 27 H 0.136 0.864 28 H 0.159 0.841 29 H 0.135 0.865 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.018 0.982 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.141 -10.680 3.789 12.065 hybrid contribution -0.911 0.987 0.014 1.343 sum 3.230 -9.693 3.803 10.902 Atomic orbital electron populations 1.22946 0.79087 1.03027 1.01410 1.85981 1.20852 1.27685 1.89529 1.18841 0.92263 0.83714 0.98622 1.21174 0.99491 0.92586 1.10176 1.21283 0.94660 0.97343 0.92520 1.20614 0.93772 0.95929 1.01013 1.19411 0.95081 0.91625 0.98732 1.20178 0.91096 0.97648 1.09805 1.20410 0.91256 0.97996 1.01460 1.21535 0.99019 0.94587 1.00272 1.22033 0.97127 0.97835 0.99904 1.19228 0.89570 0.86187 0.94485 0.91131 1.43978 1.60763 1.23489 1.02903 1.20728 0.95933 0.97626 0.83761 1.19185 1.10061 1.00310 1.08957 0.91512 1.25003 0.96345 0.98726 0.99413 1.70066 1.23302 1.35527 1.25937 0.86380 0.77892 0.84962 0.77556 1.21140 1.21755 1.21026 0.92956 0.92795 0.88923 0.86363 0.84074 0.86452 0.91075 0.91473 0.92205 0.91942 0.91909 0.91928 0.95140 0.94418 0.98216 0.93766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.82 101.05 0.99 1.36 16 2 O -0.33 -5.16 10.50 -19.44 -0.20 -5.37 16 3 C 0.11 1.93 6.68 -39.32 -0.26 1.67 16 4 C -0.22 -4.00 9.04 -39.54 -0.36 -4.36 16 5 C -0.04 -0.84 9.01 -39.46 -0.36 -1.19 16 6 C -0.11 -2.20 5.05 -104.58 -0.53 -2.73 16 7 C -0.05 -0.83 5.74 -104.63 -0.60 -1.43 16 8 C -0.17 -2.86 9.55 -39.29 -0.38 -3.24 16 9 C -0.07 -1.05 5.67 -28.05 -0.16 -1.21 16 10 C -0.12 -1.63 5.98 -26.70 -0.16 -1.79 16 11 C -0.13 -2.26 5.37 -26.71 -0.14 -2.41 16 12 C 0.21 4.39 2.58 -69.25 -0.18 4.21 16 13 H 0.07 1.48 7.85 -51.93 -0.41 1.08 16 14 N -0.59 -14.39 1.94 -174.99 -0.34 -14.73 16 15 C 0.16 4.06 8.11 59.85 0.49 4.55 16 16 C -0.26 -6.81 9.51 -15.06 -0.14 -6.96 16 17 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 18 C 0.00 0.10 5.08 -17.43 -0.09 0.01 16 19 N -0.90 -25.70 10.77 55.49 0.60 -25.10 16 20 Si 0.90 21.56 29.58 -169.99 -5.03 16.53 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 H 0.05 0.58 7.67 -51.93 -0.40 0.19 16 25 H 0.05 0.63 7.67 -51.93 -0.40 0.24 16 26 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.12 1.98 6.33 -52.48 -0.33 1.65 16 28 H 0.14 3.41 7.54 -52.49 -0.40 3.02 16 29 H 0.12 1.75 8.05 -52.49 -0.42 1.33 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 34 H 0.06 1.15 6.40 -51.93 -0.33 0.81 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.03 0.82 7.33 -51.93 -0.38 0.44 16 37 H 0.04 1.00 7.38 -51.93 -0.38 0.61 16 38 H 0.00 -0.01 6.37 -51.93 -0.33 -0.35 16 39 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 308.81 15.07 4.65 4.65 Total: -1.00 -29.02 308.81 -8.05 -37.08 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.86 Total: 0.44 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -1.87 Total: -13.50 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.26 Total: -39.84 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.20 Total: -5.37 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.02 -8.05 -37.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334452928.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.047 kcal (2) G-P(sol) polarization free energy of solvation -29.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds