Wall clock time and date at job start Mon Mar 30 2020 06:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35905 * 116.99845 * 2 1 4 4 C 1.38756 * 120.17468 * 359.97438 * 3 2 1 5 5 C 1.37836 * 119.71341 * 179.88335 * 4 3 2 6 6 C 1.38960 * 120.62040 * 0.07799 * 5 4 3 7 7 C 1.37700 * 119.77179 * 0.16179 * 6 5 4 8 8 C 1.38426 * 120.17001 * 180.02562 * 3 2 1 9 9 C 1.50645 * 122.55994 * 179.31621 * 7 6 5 10 10 C 1.52735 * 110.58919 * 17.89872 * 9 7 6 11 11 C 1.53319 * 108.38167 * 308.85786 * 10 9 7 12 12 C 1.50650 * 117.68868 * 180.34811 * 6 5 4 13 13 H 1.09006 * 109.25423 * 77.42934 * 12 6 5 14 14 N 1.46502 * 109.25581 * 317.96954 * 12 6 5 15 15 C 1.46507 * 119.99505 * 299.99928 * 14 12 6 16 16 C 1.36933 * 120.00436 * 120.00144 * 14 12 6 17 17 H 1.08004 * 119.99551 * 23.16338 * 16 14 12 18 18 C 1.38814 * 120.00063 * 203.17059 * 16 14 12 19 19 N 1.31619 * 120.00011 * 13.95198 * 18 16 14 20 20 Si 1.86800 * 119.99825 * 193.95182 * 18 16 14 21 21 H 1.48500 * 109.47163 * 60.00047 * 20 18 16 22 22 H 1.48496 * 109.46994 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46905 * 299.99863 * 20 18 16 24 24 H 1.08997 * 109.46889 * 300.00398 * 1 2 3 25 25 H 1.09003 * 109.46927 * 59.99567 * 1 2 3 26 26 H 1.08994 * 109.46722 * 180.02562 * 1 2 3 27 27 H 1.08005 * 120.14508 * 359.85289 * 4 3 2 28 28 H 1.07993 * 119.68769 * 180.10489 * 5 4 3 29 29 H 1.07997 * 119.74712 * 359.66464 * 8 3 2 30 30 H 1.08999 * 109.25059 * 257.61604 * 9 7 6 31 31 H 1.08998 * 109.25324 * 138.18713 * 9 7 6 32 32 H 1.08994 * 109.68196 * 189.12856 * 10 9 7 33 33 H 1.09006 * 109.71076 * 68.59323 * 10 9 7 34 34 H 1.09002 * 109.67888 * 310.13603 * 11 10 9 35 35 H 1.08997 * 109.67706 * 189.58874 * 11 10 9 36 36 H 1.09000 * 109.46724 * 95.16166 * 15 14 12 37 37 H 1.08999 * 109.47081 * 215.15813 * 15 14 12 38 38 H 1.09002 * 109.47066 * 335.16548 * 15 14 12 39 39 H 0.96996 * 119.99986 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2939 2.3769 -0.0005 5 6 1.9294 3.6000 0.0019 6 6 3.3169 3.6766 0.0033 7 6 4.0655 2.5209 -0.0012 8 6 3.4282 1.2875 -0.0005 9 6 5.5719 2.5307 -0.0152 10 6 6.1042 3.8957 0.4164 11 6 5.4048 4.9738 -0.4198 12 6 3.9423 5.0471 0.0140 13 1 3.8872 5.4595 1.0216 14 7 3.2088 5.9201 -0.9058 15 6 3.1219 5.5781 -2.3277 16 6 2.6044 7.0558 -0.4366 17 1 2.9522 7.5143 0.4774 18 6 1.5448 7.6176 -1.1355 19 7 0.9422 6.9295 -2.0820 20 14 0.9743 9.3501 -0.7328 21 1 2.0926 10.3027 -0.9501 22 1 -0.1644 9.7136 -1.6140 23 1 0.5406 9.4112 0.6861 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 -1.0276 0.0005 27 1 0.2150 2.3264 -0.0034 28 1 1.3436 4.5072 0.0032 29 1 4.0151 0.3810 0.0045 30 1 5.9234 2.3102 -1.0231 31 1 5.9427 1.7676 0.6691 32 1 7.1800 3.9403 0.2475 33 1 5.8916 4.0557 1.4735 34 1 5.4615 4.7128 -1.4767 35 1 5.8861 5.9374 -0.2529 36 1 2.1934 5.0391 -2.5156 37 1 3.1388 6.4912 -2.9227 38 1 3.9690 4.9495 -2.6026 39 1 0.2016 7.3220 -2.5701 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334452928.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:45 Heat of formation + Delta-G solvation = -12.080568 kcal Electronic energy + Delta-G solvation = -20186.927148 eV Core-core repulsion = 17287.467146 eV Total energy + Delta-G solvation = -2899.460002 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.34078 -39.65488 -37.15892 -35.83199 -33.63400 -31.73520 -30.48213 -29.50473 -27.97672 -27.65143 -25.26745 -23.71291 -23.14168 -22.05688 -20.06585 -18.83186 -18.45832 -17.20332 -16.95740 -16.67649 -16.51501 -15.72025 -15.44085 -15.19661 -14.78716 -14.37196 -14.19358 -13.90864 -13.74718 -13.59521 -13.23684 -12.86955 -12.79480 -12.77420 -12.60022 -12.42656 -12.13897 -12.11620 -11.88187 -11.57730 -11.53415 -11.31190 -11.10157 -10.57409 -9.58273 -8.96758 -8.68690 -7.78656 -5.27324 0.48487 0.59464 1.45890 1.47988 1.54220 2.40985 2.51348 2.87528 3.32904 3.68737 3.90746 3.99752 4.04872 4.24821 4.30285 4.31730 4.36485 4.38781 4.52590 4.66070 4.68479 4.74677 4.82387 4.86387 4.98205 5.11663 5.14919 5.20164 5.26331 5.32262 5.34210 5.49943 5.57617 5.65509 5.68507 5.73867 5.92170 6.01917 6.36502 6.52226 7.17937 7.90530 8.36685 9.22648 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018772 B = 0.007159 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.248312 B = 3909.954396 C = 5050.947807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.330 6.330 3 C 0.113 3.887 4 C -0.223 4.223 5 C -0.064 4.064 6 C -0.130 4.130 7 C -0.041 4.041 8 C -0.168 4.168 9 C -0.073 4.073 10 C -0.108 4.108 11 C -0.122 4.122 12 C 0.209 3.791 13 H 0.057 0.943 14 N -0.600 5.600 15 C 0.186 3.814 16 C -0.261 4.261 17 H 0.068 0.932 18 C -0.049 4.049 19 N -0.933 5.933 20 Si 0.964 3.036 21 H -0.279 1.279 22 H -0.297 1.297 23 H -0.278 1.278 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.096 0.904 29 H 0.147 0.853 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.000 1.000 37 H 0.011 0.989 38 H 0.023 0.977 39 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.067 -12.477 4.776 14.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.244 6.244 3 C 0.068 3.932 4 C -0.242 4.242 5 C -0.082 4.082 6 C -0.133 4.133 7 C -0.042 4.042 8 C -0.186 4.186 9 C -0.110 4.110 10 C -0.146 4.146 11 C -0.161 4.161 12 C 0.103 3.897 13 H 0.075 0.925 14 N -0.322 5.322 15 C 0.041 3.959 16 C -0.391 4.391 17 H 0.086 0.914 18 C -0.244 4.244 19 N -0.579 5.579 20 Si 0.792 3.208 21 H -0.206 1.206 22 H -0.223 1.223 23 H -0.204 1.204 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.145 0.855 27 H 0.145 0.855 28 H 0.114 0.886 29 H 0.165 0.835 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.018 0.982 37 H 0.030 0.970 38 H 0.041 0.959 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.003 -12.599 4.667 14.715 hybrid contribution -1.517 1.459 -0.199 2.115 sum 4.486 -11.139 4.467 12.813 Atomic orbital electron populations 1.23258 0.77076 1.05400 1.01559 1.85985 1.22905 1.26448 1.89102 1.18970 0.92827 0.83858 0.97526 1.21215 1.00175 0.92351 1.10474 1.20993 0.95310 0.96595 0.95321 1.20498 0.93367 0.96427 1.02978 1.19760 0.97088 0.90626 0.96732 1.20557 0.91095 0.98537 1.08446 1.20533 0.88456 0.98842 1.03151 1.21510 1.00417 0.93069 0.99555 1.21918 0.94872 0.99332 1.00023 1.19397 0.91140 0.86077 0.93095 0.92452 1.44111 1.60920 1.23888 1.03281 1.20356 0.95335 0.96137 0.84046 1.19486 1.09788 1.01165 1.08694 0.91412 1.25709 0.96806 1.02090 0.99801 1.70239 1.23790 1.36755 1.27157 0.85400 0.77170 0.80898 0.77307 1.20560 1.22304 1.20356 0.92464 0.93037 0.85475 0.85547 0.88601 0.83487 0.89693 0.88280 0.88989 0.91670 0.92676 0.92211 0.98213 0.97038 0.95854 0.94505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.82 113.37 1.11 1.58 16 2 O -0.33 -9.67 10.50 -92.48 -0.97 -10.64 16 3 C 0.11 3.80 6.68 22.44 0.15 3.95 16 4 C -0.22 -8.41 9.04 22.30 0.20 -8.21 16 5 C -0.06 -2.78 9.01 22.35 0.20 -2.58 16 6 C -0.13 -5.20 5.05 -19.83 -0.10 -5.30 16 7 C -0.04 -1.34 5.74 -19.87 -0.11 -1.45 16 8 C -0.17 -5.22 9.55 22.46 0.21 -5.00 16 9 C -0.07 -1.75 5.67 29.74 0.17 -1.58 16 10 C -0.11 -2.64 5.98 30.61 0.18 -2.45 16 11 C -0.12 -4.09 5.37 30.61 0.16 -3.93 16 12 C 0.21 8.73 2.58 44.14 0.11 8.85 16 13 H 0.06 2.48 7.85 -2.38 -0.02 2.46 16 14 N -0.60 -30.31 1.94 -707.55 -1.37 -31.68 16 15 C 0.19 9.58 8.11 127.77 1.04 10.62 16 16 C -0.26 -14.41 9.51 84.03 0.80 -13.61 16 17 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 18 C -0.05 -2.74 5.08 84.86 0.43 -2.31 16 19 N -0.93 -55.59 10.77 21.65 0.23 -55.35 16 20 Si 0.96 45.56 29.58 68.60 2.03 47.59 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 22 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H 0.06 1.19 7.67 -2.39 -0.02 1.17 16 25 H 0.05 1.15 7.67 -2.39 -0.02 1.13 16 26 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.13 4.36 6.33 -2.91 -0.02 4.34 16 28 H 0.10 5.03 7.54 -2.91 -0.02 5.01 16 29 H 0.15 3.70 8.05 -2.91 -0.02 3.68 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.10 1.84 8.12 -2.39 -0.02 1.82 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 1.59 8.10 -2.38 -0.02 1.57 16 34 H 0.05 1.92 6.40 -2.39 -0.02 1.90 16 35 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16 36 H 0.00 -0.02 7.33 -2.39 -0.02 -0.04 16 37 H 0.01 0.61 7.38 -2.39 -0.02 0.59 16 38 H 0.02 1.06 6.37 -2.39 -0.02 1.04 16 39 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -65.35 308.81 5.51 -59.84 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 1.03 Total: 11.67 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: 4.56 Total: -21.44 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -1.14 Total: -87.03 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -0.97 Total: -10.64 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -65.35 5.51 -59.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334452928.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.757 kcal (2) G-P(sol) polarization free energy of solvation -65.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds