Wall clock time and date at job start Mon Mar 30 2020 06:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35900 * 116.99577 * 2 1 4 4 C 1.38861 * 120.25223 * 0.02562 * 3 2 1 5 5 C 1.38123 * 120.01448 * 180.02562 * 4 3 2 6 6 C 1.38387 * 120.13911 * 359.95495 * 5 4 3 7 7 C 1.38276 * 119.72474 * 359.97438 * 6 5 4 8 8 C 1.37263 * 120.35546 * 0.05394 * 7 6 5 9 9 C 1.51451 * 119.91080 * 179.88968 * 8 7 6 10 10 C 1.53209 * 108.28957 * 69.51751 * 9 8 7 11 11 N 1.45374 * 110.84544 * 275.25133 * 10 9 8 12 12 C 1.46905 * 111.00018 * 301.17429 * 11 10 9 13 13 C 1.50695 * 109.46950 * 293.39579 * 12 11 10 14 14 H 1.08000 * 120.00477 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99818 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99580 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 119.99968 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47030 * 89.99827 * 17 15 13 19 19 H 1.48500 * 109.46860 * 209.99592 * 17 15 13 20 20 H 1.48500 * 109.47457 * 329.99693 * 17 15 13 21 21 C 1.45446 * 116.72206 * 69.62427 * 11 10 9 22 22 C 1.51478 * 119.80074 * 180.02562 * 7 6 5 23 23 H 1.08998 * 109.47463 * 299.99583 * 1 2 3 24 24 H 1.09001 * 109.47449 * 59.99845 * 1 2 3 25 25 H 1.09003 * 109.46997 * 179.97438 * 1 2 3 26 26 H 1.07996 * 119.99034 * 359.97438 * 4 3 2 27 27 H 1.08003 * 119.93343 * 179.97438 * 5 4 3 28 28 H 1.07995 * 120.13876 * 179.97438 * 6 5 4 29 29 H 1.08998 * 109.70158 * 189.21773 * 9 8 7 30 30 H 1.08996 * 109.69849 * 309.82026 * 9 8 7 31 31 H 1.08999 * 109.20207 * 35.60998 * 10 9 8 32 32 H 1.09005 * 109.20028 * 154.94923 * 10 9 8 33 33 H 1.09001 * 109.47218 * 53.39664 * 12 11 10 34 34 H 1.08996 * 109.46891 * 173.39546 * 12 11 10 35 35 H 0.97003 * 119.99531 * 180.02562 * 16 15 13 36 36 H 1.09005 * 109.27428 * 169.96828 * 21 11 10 37 37 H 1.08996 * 109.13375 * 50.67384 * 21 11 10 38 38 H 1.09006 * 109.69890 * 230.34118 * 22 7 6 39 39 H 1.08998 * 109.70305 * 350.90243 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2109 0.0000 4 6 1.2946 2.3788 0.0005 5 6 1.9267 3.6069 0.0000 6 6 3.3088 3.6770 -0.0001 7 6 4.0544 2.5125 0.0008 8 6 3.4309 1.2897 0.0008 9 6 4.2574 0.0206 -0.0007 10 6 4.9477 -0.1053 1.3613 11 7 6.1893 0.6505 1.3837 12 6 7.1095 0.1825 0.3386 13 6 7.5534 -1.2229 0.6527 14 1 7.1882 -1.7191 1.5397 15 6 8.4250 -1.8758 -0.1930 16 7 8.8120 -3.1026 0.0809 17 14 9.0562 -1.0179 -1.7276 18 1 10.3077 -0.2860 -1.4062 19 1 9.3299 -2.0274 -2.7818 20 1 8.0328 -0.0584 -2.2148 21 6 6.0731 2.1002 1.3629 22 6 5.5673 2.5873 0.0013 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2159 2.3267 0.0005 27 1 1.3411 4.5144 0.0000 28 1 3.8030 4.6373 -0.0010 29 1 3.6090 -0.8401 -0.1649 30 1 5.0078 0.0718 -0.7896 31 1 4.2826 0.2746 2.1367 32 1 5.1644 -1.1553 1.5577 33 1 6.6013 0.1961 -0.6256 34 1 7.9793 0.8383 0.3001 35 1 9.4255 -3.5617 -0.5139 36 1 7.0494 2.5423 1.5617 37 1 5.3738 2.4137 2.1380 38 1 5.9669 1.9508 -0.7883 39 1 5.8844 3.6174 -0.1615 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334664009.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:36 Heat of formation + Delta-G solvation = -23.485332 kcal Electronic energy + Delta-G solvation = -20158.950216 eV Core-core repulsion = 17258.995666 eV Total energy + Delta-G solvation = -2899.954550 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.64613 -39.74085 -37.95178 -34.81760 -33.70816 -33.25173 -30.24822 -30.03876 -28.28929 -27.06394 -25.29849 -24.61824 -22.88092 -21.11515 -20.80897 -18.96038 -18.56876 -17.54157 -16.82429 -16.68621 -16.54932 -16.06725 -15.95350 -15.31411 -15.02007 -14.81816 -14.47774 -14.47451 -13.74295 -13.46860 -13.25292 -13.03724 -12.86917 -12.80134 -12.50291 -12.26716 -12.12700 -12.09943 -11.89006 -11.83239 -11.63295 -11.44563 -11.22222 -10.73735 -9.87225 -9.06914 -8.61025 -8.24825 -6.26507 0.38516 0.50886 1.34805 1.36513 1.46591 2.36151 2.40738 2.78869 3.08736 3.29956 3.73001 3.78625 4.05981 4.15390 4.22046 4.30305 4.33416 4.39554 4.41853 4.45400 4.57063 4.58726 4.70147 4.71984 4.76941 4.80558 4.91980 5.03831 5.09528 5.18188 5.27591 5.35354 5.47231 5.53245 5.60790 5.72751 5.91578 6.06447 6.50968 6.54326 6.78200 6.84893 7.36413 8.92169 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024692 B = 0.006142 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.718460 B = 4557.349553 C = 5087.135613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.114 3.886 4 C -0.213 4.213 5 C -0.083 4.083 6 C -0.154 4.154 7 C -0.053 4.053 8 C -0.132 4.132 9 C -0.104 4.104 10 C 0.101 3.899 11 N -0.566 5.566 12 C 0.175 3.825 13 C -0.511 4.511 14 H 0.035 0.965 15 C 0.008 3.992 16 N -0.950 5.950 17 Si 0.942 3.058 18 H -0.263 1.263 19 H -0.284 1.284 20 H -0.252 1.252 21 C 0.077 3.923 22 C -0.120 4.120 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.112 0.888 26 H 0.151 0.849 27 H 0.156 0.844 28 H 0.148 0.852 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.000 1.000 34 H 0.027 0.973 35 H 0.265 0.735 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.066 15.797 -2.126 23.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.253 6.253 3 C 0.069 3.931 4 C -0.232 4.232 5 C -0.101 4.101 6 C -0.172 4.172 7 C -0.053 4.053 8 C -0.132 4.132 9 C -0.143 4.143 10 C -0.027 4.027 11 N -0.288 5.288 12 C 0.049 3.951 13 C -0.549 4.549 14 H 0.053 0.947 15 C -0.189 4.189 16 N -0.592 5.592 17 Si 0.766 3.234 18 H -0.187 1.187 19 H -0.210 1.210 20 H -0.175 1.175 21 C -0.051 4.051 22 C -0.159 4.159 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.130 0.870 26 H 0.168 0.832 27 H 0.174 0.826 28 H 0.165 0.835 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.017 0.983 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.709 15.370 -1.740 22.770 hybrid contribution 0.017 -0.355 -1.277 1.325 sum -16.693 15.014 -3.016 22.653 Atomic orbital electron populations 1.23316 0.76557 1.05277 1.02288 1.86076 1.23386 1.27122 1.88743 1.18997 0.91500 0.85205 0.97422 1.21480 1.00931 0.91727 1.09018 1.21289 0.94417 0.97743 0.96617 1.21267 0.94234 0.97717 1.03966 1.19694 0.95968 0.92180 0.97497 1.19202 0.91281 0.95570 1.07166 1.21168 0.97919 0.95302 0.99906 1.21356 0.88790 0.97795 0.94765 1.59435 1.13600 1.04963 1.50786 1.19911 0.91355 0.94210 0.89649 1.21326 1.26312 0.98865 1.08440 0.94668 1.25812 0.96406 0.95379 1.01317 1.70061 1.35588 1.13715 1.39791 0.85783 0.79738 0.78820 0.79064 1.18741 1.20987 1.17532 1.21846 1.01492 0.86312 0.95436 1.21609 0.91095 1.03485 0.99729 0.91486 0.91542 0.86964 0.83187 0.82600 0.83464 0.91520 0.92069 0.91807 0.93071 0.98274 0.95470 0.92590 0.89929 0.90727 0.92321 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.82 113.37 1.11 1.45 16 2 O -0.34 -9.71 9.31 -92.42 -0.86 -10.57 16 3 C 0.11 3.33 6.67 22.54 0.15 3.48 16 4 C -0.21 -4.71 9.05 22.39 0.20 -4.50 16 5 C -0.08 -1.63 10.04 22.28 0.22 -1.41 16 6 C -0.15 -3.47 9.69 22.31 0.22 -3.26 16 7 C -0.05 -1.56 5.01 -19.84 -0.10 -1.66 16 8 C -0.13 -4.39 5.02 -19.74 -0.10 -4.49 16 9 C -0.10 -4.09 5.32 30.16 0.16 -3.93 16 10 C 0.10 4.24 5.39 86.66 0.47 4.71 16 11 N -0.57 -24.18 4.46 -907.85 -4.05 -28.24 16 12 C 0.18 8.50 2.81 85.55 0.24 8.74 16 13 C -0.51 -30.19 9.08 25.60 0.23 -29.96 16 14 H 0.04 2.33 7.35 -2.91 -0.02 2.31 16 15 C 0.01 0.45 5.47 84.66 0.46 0.92 16 16 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 17 Si 0.94 44.82 27.47 68.60 1.88 46.70 16 18 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 19 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 20 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 21 C 0.08 2.55 5.53 86.64 0.48 3.03 16 22 C -0.12 -3.59 5.38 30.16 0.16 -3.43 16 23 H 0.07 0.94 7.67 -2.39 -0.02 0.92 16 24 H 0.07 0.93 7.67 -2.39 -0.02 0.91 16 25 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.15 2.38 6.33 -2.91 -0.02 2.36 16 27 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 28 H 0.15 2.50 7.98 -2.91 -0.02 2.47 16 29 H 0.07 2.66 7.08 -2.39 -0.02 2.65 16 30 H 0.06 2.66 4.89 -2.39 -0.01 2.65 16 31 H 0.06 2.47 7.86 -2.39 -0.02 2.45 16 32 H 0.05 2.46 6.87 -2.38 -0.02 2.44 16 33 H 0.00 0.00 3.65 -2.39 -0.01 -0.01 16 34 H 0.03 1.29 7.34 -2.39 -0.02 1.27 16 35 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 36 H 0.08 2.55 8.08 -2.38 -0.02 2.53 16 37 H 0.07 2.29 7.86 -2.39 -0.02 2.27 16 38 H 0.06 2.06 5.39 -2.38 -0.01 2.05 16 39 H 0.10 2.38 7.93 -2.39 -0.02 2.36 16 Total: -1.00 -71.19 298.70 2.17 -69.01 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.99 Total: 13.75 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: 3.91 Total: -30.31 kcal Atomic # 7 Polarization: -84.83 SS G_CDS: -3.75 Total: -88.58 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -0.86 Total: -10.57 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Total: -71.19 2.17 -69.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334664009.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.528 kcal (2) G-P(sol) polarization free energy of solvation -71.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds