Wall clock time and date at job start Mon Mar 30 2020 07:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38594 * 120.80118 * 2 1 4 4 N 1.32325 * 119.10629 * 179.97438 * 3 2 1 5 5 C 1.31794 * 120.82314 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.12982 * 179.97438 * 5 4 3 7 7 N 1.46496 * 109.47031 * 89.99399 * 6 5 4 8 8 C 1.36931 * 120.00561 * 270.00093 * 7 6 5 9 9 H 1.08007 * 120.00232 * 141.41616 * 8 7 6 10 10 C 1.38809 * 120.00036 * 321.42751 * 8 7 6 11 11 N 1.31623 * 120.00084 * 339.37985 * 10 8 7 12 12 Si 1.86802 * 120.00425 * 159.38143 * 10 8 7 13 13 H 1.48505 * 109.47033 * 59.99652 * 12 10 8 14 14 H 1.48498 * 109.47238 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47035 * 300.00139 * 12 10 8 16 16 C 1.46505 * 119.99679 * 90.00686 * 7 6 5 17 17 C 1.55246 * 110.46683 * 240.04607 * 16 7 6 18 18 C 1.54887 * 102.58880 * 203.39149 * 17 16 7 19 19 C 1.54276 * 104.30996 * 37.93164 * 18 17 16 20 20 C 1.53876 * 106.59949 * 336.32333 * 19 18 17 21 21 N 1.31795 * 121.75005 * 0.27372 * 5 4 3 22 22 C 1.32338 * 120.81695 * 359.44271 * 21 5 4 23 23 H 1.08996 * 109.46992 * 90.00451 * 1 2 3 24 24 H 1.09005 * 109.46762 * 210.00581 * 1 2 3 25 25 H 1.09000 * 109.47396 * 329.99915 * 1 2 3 26 26 H 1.08001 * 120.44413 * 359.95006 * 3 2 1 27 27 H 1.09002 * 109.46821 * 330.00014 * 6 5 4 28 28 H 1.08999 * 109.47294 * 210.00002 * 6 5 4 29 29 H 0.96998 * 120.00128 * 180.02562 * 11 10 8 30 30 H 1.08998 * 110.43509 * 2.69244 * 16 7 6 31 31 H 1.08994 * 110.89758 * 85.09857 * 17 16 7 32 32 H 1.09003 * 110.76305 * 321.62694 * 17 16 7 33 33 H 1.08994 * 110.48690 * 279.18947 * 18 17 16 34 34 H 1.08997 * 110.48863 * 156.67348 * 18 17 16 35 35 H 1.09003 * 110.03043 * 95.60641 * 19 18 17 36 36 H 1.08995 * 110.02993 * 216.98623 * 19 18 17 37 37 H 1.09000 * 110.03009 * 119.28357 * 20 19 18 38 38 H 1.08997 * 110.03028 * 240.66851 * 20 19 18 39 39 H 1.08003 * 120.44832 * 180.25295 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1905 0.0000 4 7 3.5394 1.1513 0.0005 5 6 4.1809 0.0001 0.0015 6 6 5.6879 0.0000 0.0015 7 7 6.1762 0.0014 1.3827 8 6 6.4045 1.1878 2.0271 9 1 6.1556 1.2909 3.0730 10 6 6.9556 2.2581 1.3361 11 7 7.6242 2.0481 0.2220 12 14 6.7484 3.9967 1.9873 13 1 7.3528 4.0937 3.3404 14 1 7.4255 4.9515 1.0736 15 1 5.3027 4.3267 2.0662 16 6 6.4205 -1.2668 2.0745 17 6 5.5325 -1.3727 3.3435 18 6 6.3151 -2.3819 4.2198 19 6 7.7970 -2.0259 3.9804 20 6 7.8639 -1.3169 2.6164 21 7 3.5395 -1.1513 -0.0033 22 6 2.2167 -1.1905 0.0017 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5140 25 1 -0.3634 0.8900 0.5138 26 1 1.6972 2.1373 -0.0008 27 1 6.0512 0.8896 -0.5131 28 1 6.0512 -0.8904 -0.5115 29 1 8.0096 2.7960 -0.2607 30 1 6.2347 -2.1071 1.4056 31 1 4.5448 -1.7611 3.0955 32 1 5.4548 -0.4067 3.8424 33 1 6.1116 -3.4035 3.8992 34 1 6.0572 -2.2544 5.2712 35 1 8.1523 -1.3588 4.7658 36 1 8.4004 -2.9333 3.9604 37 1 8.2517 -0.3057 2.7398 38 1 8.5004 -1.8799 1.9338 39 1 1.6972 -2.1374 0.0018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336679817.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:34 Heat of formation + Delta-G solvation = 53.752015 kcal Electronic energy + Delta-G solvation = -20115.555456 eV Core-core repulsion = 17251.242920 eV Total energy + Delta-G solvation = -2864.312536 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.34295 -37.60814 -34.68515 -33.14863 -32.97686 -31.01630 -28.45647 -27.81438 -26.38991 -25.22300 -23.99103 -22.70284 -21.00453 -19.78997 -19.09456 -17.03293 -16.69512 -15.77558 -15.31325 -14.74485 -14.45388 -14.11018 -14.01478 -13.33587 -13.13323 -12.95609 -12.67116 -12.52815 -12.39497 -12.31241 -11.30897 -11.09329 -10.98920 -10.70470 -10.52949 -10.36481 -10.28791 -10.16503 -10.11439 -10.08991 -9.95932 -9.67912 -9.41905 -8.59423 -8.47598 -8.40957 -6.57739 -5.80410 -3.36562 1.50335 1.75003 3.41407 3.46578 3.51882 4.34951 4.56037 4.79083 4.87202 5.04262 5.14505 5.20070 5.34663 5.37496 5.46192 5.54672 5.61598 5.80963 5.86371 5.89821 6.22586 6.25381 6.26715 6.28059 6.30875 6.43029 6.57025 6.62255 6.66356 6.77705 6.88937 7.06845 7.09142 7.19299 7.43139 7.55381 7.70964 7.86388 8.52530 8.95840 9.16801 9.80276 10.37391 11.21160 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013981 B = 0.009011 C = 0.006308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.221973 B = 3106.432110 C = 4437.787591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.230 4.230 3 C 0.141 3.859 4 N -0.493 5.493 5 C 0.318 3.682 6 C 0.202 3.798 7 N -0.557 5.557 8 C -0.254 4.254 9 H 0.058 0.942 10 C 0.027 3.973 11 N -0.880 5.880 12 Si 0.897 3.103 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.280 1.280 16 C 0.174 3.826 17 C -0.134 4.134 18 C -0.121 4.121 19 C -0.119 4.119 20 C -0.131 4.131 21 N -0.520 5.520 22 C 0.137 3.863 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.153 0.847 27 H 0.118 0.882 28 H 0.052 0.948 29 H 0.257 0.743 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.085 0.915 38 H 0.046 0.954 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.037 -6.005 0.919 10.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.235 4.235 3 C -0.027 4.027 4 N -0.206 5.206 5 C 0.050 3.950 6 C 0.074 3.926 7 N -0.275 5.275 8 C -0.384 4.384 9 H 0.076 0.924 10 C -0.174 4.174 11 N -0.521 5.521 12 Si 0.727 3.273 13 H -0.210 1.210 14 H -0.216 1.216 15 H -0.206 1.206 16 C 0.067 3.933 17 C -0.173 4.173 18 C -0.160 4.160 19 C -0.157 4.157 20 C -0.170 4.170 21 N -0.234 5.234 22 C -0.030 4.030 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.170 0.830 27 H 0.135 0.865 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.830 -5.877 0.788 9.821 hybrid contribution -1.350 0.962 0.434 1.714 sum -9.180 -4.915 1.223 10.484 Atomic orbital electron populations 1.20513 0.90327 1.02552 1.01876 1.21486 0.98167 0.96170 1.07644 1.23127 0.90654 0.97387 0.91550 1.68487 1.08464 1.31391 1.12272 1.25453 1.00940 0.82039 0.86588 1.19986 0.80368 1.03476 0.88809 1.43713 1.71310 1.01302 1.11128 1.18767 1.35543 0.88738 0.95306 0.92396 1.25117 0.95682 0.99013 0.97617 1.69938 1.33383 1.30659 1.18165 0.86472 0.78178 0.84652 0.78041 1.20953 1.21623 1.20641 1.21348 0.91830 0.88234 0.91860 1.22923 0.97772 0.98524 0.98112 1.22266 0.96026 0.98800 0.98863 1.22067 0.95892 0.99156 0.98634 1.22483 0.98726 1.01596 0.94172 1.68426 1.09000 1.31707 1.14248 1.22986 0.90520 0.97309 0.92194 0.91590 0.91753 0.91685 0.83002 0.86471 0.92983 0.93315 0.92500 0.93550 0.91336 0.92688 0.93078 0.92760 0.93284 0.89649 0.93557 0.83065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 10.06 36.01 0.36 -0.61 16 2 C -0.23 -3.45 5.91 -104.36 -0.62 -4.06 16 3 C 0.14 2.47 11.01 -17.21 -0.19 2.28 16 4 N -0.49 -10.91 10.33 -10.73 -0.11 -11.02 16 5 C 0.32 7.10 7.23 -157.19 -1.14 5.96 16 6 C 0.20 4.89 5.71 -5.20 -0.03 4.86 16 7 N -0.56 -13.66 2.44 -164.92 -0.40 -14.07 16 8 C -0.25 -6.77 7.73 -15.06 -0.12 -6.88 16 9 H 0.06 1.58 6.72 -52.48 -0.35 1.23 16 10 C 0.03 0.74 4.96 -17.43 -0.09 0.65 16 11 N -0.88 -24.63 11.49 55.49 0.64 -23.99 16 12 Si 0.90 21.84 29.60 -169.99 -5.03 16.81 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 C 0.17 3.75 3.40 -66.08 -0.22 3.53 16 17 C -0.13 -2.65 6.47 -24.55 -0.16 -2.80 16 18 C -0.12 -2.00 6.82 -25.07 -0.17 -2.17 16 19 C -0.12 -2.02 6.80 -25.61 -0.17 -2.20 16 20 C -0.13 -2.66 6.41 -25.61 -0.16 -2.82 16 21 N -0.52 -10.43 10.33 -10.72 -0.11 -10.54 16 22 C 0.14 2.23 11.01 -17.20 -0.19 2.04 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 25 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 26 H 0.15 2.19 8.06 -52.49 -0.42 1.77 16 27 H 0.12 3.16 5.56 -51.93 -0.29 2.87 16 28 H 0.05 1.21 7.92 -51.93 -0.41 0.79 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.06 1.21 7.84 -51.93 -0.41 0.80 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 1.49 6.62 -51.93 -0.34 1.15 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.08 2.00 6.92 -51.93 -0.36 1.65 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.15 1.90 8.06 -52.48 -0.42 1.48 16 LS Contribution 318.25 15.07 4.80 4.80 Total: -1.00 -29.33 318.25 -9.06 -38.39 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.94 Total: 1.85 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.89 Total: -2.24 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: 0.01 Total: -59.61 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.33 -9.06 -38.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336679817.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.146 kcal (2) G-P(sol) polarization free energy of solvation -29.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds