Wall clock time and date at job start Mon Mar 30 2020 07:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38594 * 120.80118 * 2 1 4 4 N 1.32325 * 119.10629 * 179.97438 * 3 2 1 5 5 C 1.31794 * 120.82314 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.12982 * 179.97438 * 5 4 3 7 7 N 1.46496 * 109.47031 * 89.99399 * 6 5 4 8 8 C 1.36931 * 120.00561 * 270.00093 * 7 6 5 9 9 H 1.08007 * 120.00232 * 141.41616 * 8 7 6 10 10 C 1.38809 * 120.00036 * 321.42751 * 8 7 6 11 11 N 1.31623 * 120.00084 * 339.37985 * 10 8 7 12 12 Si 1.86802 * 120.00425 * 159.38143 * 10 8 7 13 13 H 1.48505 * 109.47033 * 59.99652 * 12 10 8 14 14 H 1.48498 * 109.47238 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47035 * 300.00139 * 12 10 8 16 16 C 1.46505 * 119.99679 * 90.00686 * 7 6 5 17 17 C 1.55246 * 110.46683 * 240.04607 * 16 7 6 18 18 C 1.54887 * 102.58880 * 203.39149 * 17 16 7 19 19 C 1.54276 * 104.30996 * 37.93164 * 18 17 16 20 20 C 1.53876 * 106.59949 * 336.32333 * 19 18 17 21 21 N 1.31795 * 121.75005 * 0.27372 * 5 4 3 22 22 C 1.32338 * 120.81695 * 359.44271 * 21 5 4 23 23 H 1.08996 * 109.46992 * 90.00451 * 1 2 3 24 24 H 1.09005 * 109.46762 * 210.00581 * 1 2 3 25 25 H 1.09000 * 109.47396 * 329.99915 * 1 2 3 26 26 H 1.08001 * 120.44413 * 359.95006 * 3 2 1 27 27 H 1.09002 * 109.46821 * 330.00014 * 6 5 4 28 28 H 1.08999 * 109.47294 * 210.00002 * 6 5 4 29 29 H 0.96998 * 120.00128 * 180.02562 * 11 10 8 30 30 H 1.08998 * 110.43509 * 2.69244 * 16 7 6 31 31 H 1.08994 * 110.89758 * 85.09857 * 17 16 7 32 32 H 1.09003 * 110.76305 * 321.62694 * 17 16 7 33 33 H 1.08994 * 110.48690 * 279.18947 * 18 17 16 34 34 H 1.08997 * 110.48863 * 156.67348 * 18 17 16 35 35 H 1.09003 * 110.03043 * 95.60641 * 19 18 17 36 36 H 1.08995 * 110.02993 * 216.98623 * 19 18 17 37 37 H 1.09000 * 110.03009 * 119.28357 * 20 19 18 38 38 H 1.08997 * 110.03028 * 240.66851 * 20 19 18 39 39 H 1.08003 * 120.44832 * 180.25295 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1905 0.0000 4 7 3.5394 1.1513 0.0005 5 6 4.1809 0.0001 0.0015 6 6 5.6879 0.0000 0.0015 7 7 6.1762 0.0014 1.3827 8 6 6.4045 1.1878 2.0271 9 1 6.1556 1.2909 3.0730 10 6 6.9556 2.2581 1.3361 11 7 7.6242 2.0481 0.2220 12 14 6.7484 3.9967 1.9873 13 1 7.3528 4.0937 3.3404 14 1 7.4255 4.9515 1.0736 15 1 5.3027 4.3267 2.0662 16 6 6.4205 -1.2668 2.0745 17 6 5.5325 -1.3727 3.3435 18 6 6.3151 -2.3819 4.2198 19 6 7.7970 -2.0259 3.9804 20 6 7.8639 -1.3169 2.6164 21 7 3.5395 -1.1513 -0.0033 22 6 2.2167 -1.1905 0.0017 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5140 25 1 -0.3634 0.8900 0.5138 26 1 1.6972 2.1373 -0.0008 27 1 6.0512 0.8896 -0.5131 28 1 6.0512 -0.8904 -0.5115 29 1 8.0096 2.7960 -0.2607 30 1 6.2347 -2.1071 1.4056 31 1 4.5448 -1.7611 3.0955 32 1 5.4548 -0.4067 3.8424 33 1 6.1116 -3.4035 3.8992 34 1 6.0572 -2.2544 5.2712 35 1 8.1523 -1.3588 4.7658 36 1 8.4004 -2.9333 3.9604 37 1 8.2517 -0.3057 2.7398 38 1 8.5004 -1.8799 1.9338 39 1 1.6972 -2.1374 0.0018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336679817.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:33 Heat of formation + Delta-G solvation = 37.282560 kcal Electronic energy + Delta-G solvation = -20116.269625 eV Core-core repulsion = 17251.242920 eV Total energy + Delta-G solvation = -2865.026705 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.79840 -39.25271 -36.35450 -34.58337 -34.45216 -32.90597 -29.91887 -29.36794 -28.06514 -26.79150 -25.37929 -24.37383 -22.53930 -21.32801 -20.76991 -18.52345 -18.46044 -17.37884 -16.95957 -16.55822 -16.00720 -15.76204 -15.22193 -14.90344 -14.60955 -14.39273 -14.22193 -14.06192 -13.63969 -13.20542 -13.10778 -12.92611 -12.78509 -12.58618 -12.24730 -11.93384 -11.90393 -11.81122 -11.79440 -11.67348 -11.55600 -11.23095 -11.09961 -10.46856 -9.93837 -9.91445 -8.53778 -7.82622 -5.43194 0.10233 0.37159 1.43082 1.47930 1.53170 2.50550 2.90960 3.23054 3.42953 3.49998 3.71352 3.81862 3.98127 4.02681 4.08000 4.09812 4.29155 4.64498 4.66948 4.69645 4.75122 4.87521 4.88702 4.90095 4.92222 4.98354 5.15735 5.16598 5.20563 5.24334 5.30982 5.50367 5.52367 5.62780 5.66774 5.71083 5.80057 6.29405 6.50331 7.16911 7.45321 7.84904 8.39129 9.15436 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013981 B = 0.009011 C = 0.006308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.221973 B = 3106.432110 C = 4437.787591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.202 4.202 3 C 0.120 3.880 4 N -0.536 5.536 5 C 0.297 3.703 6 C 0.210 3.790 7 N -0.570 5.570 8 C -0.249 4.249 9 H 0.046 0.954 10 C -0.016 4.016 11 N -0.908 5.908 12 Si 0.946 3.054 13 H -0.276 1.276 14 H -0.290 1.290 15 H -0.286 1.286 16 C 0.167 3.833 17 C -0.125 4.125 18 C -0.110 4.110 19 C -0.112 4.112 20 C -0.128 4.128 21 N -0.534 5.534 22 C 0.128 3.872 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.180 0.820 27 H 0.084 0.916 28 H 0.047 0.953 29 H 0.252 0.748 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.048 0.952 39 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.623 -7.536 1.930 13.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.206 4.206 3 C -0.046 4.046 4 N -0.250 5.250 5 C 0.028 3.972 6 C 0.081 3.919 7 N -0.288 5.288 8 C -0.379 4.379 9 H 0.063 0.937 10 C -0.214 4.214 11 N -0.551 5.551 12 Si 0.775 3.225 13 H -0.202 1.202 14 H -0.216 1.216 15 H -0.212 1.212 16 C 0.061 3.939 17 C -0.165 4.165 18 C -0.148 4.148 19 C -0.150 4.150 20 C -0.167 4.167 21 N -0.249 5.249 22 C -0.039 4.039 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.097 0.903 26 H 0.197 0.803 27 H 0.102 0.898 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -10.453 -7.419 1.811 12.945 hybrid contribution -0.746 1.357 0.050 1.549 sum -11.199 -6.062 1.861 12.870 Atomic orbital electron populations 1.20650 0.86180 1.04383 1.03698 1.22001 1.00820 0.94549 1.03260 1.23691 0.89413 0.99851 0.91683 1.68339 1.11098 1.31815 1.13735 1.24677 0.99996 0.83136 0.89354 1.19587 0.82471 1.01502 0.88353 1.43803 1.72332 1.01675 1.11036 1.18746 1.34529 0.89790 0.94857 0.93680 1.25644 0.96066 1.01576 0.98137 1.70048 1.34919 1.30856 1.19311 0.85691 0.77498 0.81551 0.77751 1.20224 1.21629 1.21239 1.21522 0.92972 0.87020 0.92417 1.22767 0.97828 0.98310 0.97581 1.22232 0.94598 0.98675 0.99295 1.22020 0.96952 0.99917 0.96111 1.22393 0.97809 0.99892 0.96609 1.68328 1.11196 1.30645 1.14690 1.23752 0.89285 0.99693 0.91150 0.89500 0.89543 0.90314 0.80336 0.89823 0.93452 0.93870 0.92462 0.93762 0.93960 0.90563 0.91098 0.92606 0.90499 0.93498 0.93360 0.78866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.42 10.06 71.24 0.72 -0.71 16 2 C -0.20 -5.43 5.91 -19.69 -0.12 -5.54 16 3 C 0.12 4.03 11.01 84.70 0.93 4.97 16 4 N -0.54 -24.10 10.33 -187.85 -1.94 -26.04 16 5 C 0.30 13.59 7.23 138.75 1.00 14.59 16 6 C 0.21 10.66 5.71 85.63 0.49 11.15 16 7 N -0.57 -29.14 2.44 -675.70 -1.65 -30.79 16 8 C -0.25 -13.84 7.73 84.03 0.65 -13.19 16 9 H 0.05 2.58 6.72 -2.91 -0.02 2.56 16 10 C -0.02 -0.89 4.96 84.86 0.42 -0.47 16 11 N -0.91 -53.41 11.49 21.65 0.25 -53.16 16 12 Si 0.95 46.38 29.60 68.60 2.03 48.41 16 13 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 14 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 15 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 16 C 0.17 7.31 3.40 46.19 0.16 7.47 16 17 C -0.13 -4.91 6.47 32.01 0.21 -4.70 16 18 C -0.11 -3.35 6.82 31.67 0.22 -3.13 16 19 C -0.11 -3.59 6.80 31.32 0.21 -3.38 16 20 C -0.13 -5.27 6.41 31.32 0.20 -5.06 16 21 N -0.53 -21.14 10.33 -187.84 -1.94 -23.08 16 22 C 0.13 3.80 11.01 84.70 0.93 4.73 16 23 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.09 1.05 8.10 -2.38 -0.02 1.03 16 25 H 0.08 1.09 8.10 -2.39 -0.02 1.07 16 26 H 0.18 4.80 8.06 -2.91 -0.02 4.78 16 27 H 0.08 4.82 5.56 -2.39 -0.01 4.81 16 28 H 0.05 2.33 7.92 -2.39 -0.02 2.31 16 29 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 30 H 0.06 2.47 7.84 -2.39 -0.02 2.45 16 31 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.86 6.62 -2.39 -0.02 1.84 16 33 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.05 2.28 6.92 -2.39 -0.02 2.27 16 38 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.19 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -67.80 318.25 3.80 -64.00 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 1.03 Total: 13.94 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 6.02 Total: 6.71 kcal Atomic # 7 Polarization: -127.79 SS G_CDS: -5.28 Total: -133.07 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -67.80 3.80 -64.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336679817.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.283 kcal (2) G-P(sol) polarization free energy of solvation -67.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds