Wall clock time and date at job start Mon Mar 30 2020 06:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.65742 * 2 1 4 4 C 1.54606 * 110.89805 * 236.70189 * 2 1 3 5 5 N 1.47910 * 102.62199 * 216.05932 * 4 2 1 6 6 C 1.46898 * 110.99686 * 265.48330 * 5 4 2 7 7 C 1.53000 * 109.47357 * 189.84370 * 6 5 4 8 8 O 1.42903 * 109.46726 * 64.99864 * 7 6 5 9 9 C 1.42899 * 113.99629 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47140 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99703 * 359.97438 * 10 9 8 12 12 C 1.37882 * 120.00389 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99589 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00194 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47375 * 59.99217 * 14 12 10 16 16 H 1.48502 * 109.47363 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47158 * 299.99379 * 14 12 10 18 18 C 1.40039 * 107.87832 * 27.29630 * 5 4 2 19 19 C 1.39402 * 129.95069 * 161.61621 * 18 5 4 20 20 C 1.37914 * 120.19654 * 179.65701 * 19 18 5 21 21 C 1.38304 * 120.26438 * 0.02606 * 20 19 18 22 22 C 1.38303 * 119.88211 * 0.13000 * 21 20 19 23 23 C 1.37923 * 120.08395 * 359.97438 * 22 21 20 24 24 H 1.08995 * 109.47291 * 298.26244 * 1 2 3 25 25 H 1.09001 * 109.46996 * 58.26243 * 1 2 3 26 26 H 1.09002 * 109.46885 * 178.25868 * 1 2 3 27 27 H 1.08990 * 110.77932 * 97.76992 * 4 2 1 28 28 H 1.09003 * 110.77396 * 334.33562 * 4 2 1 29 29 H 1.09002 * 109.47351 * 69.84673 * 6 5 4 30 30 H 1.09002 * 109.47308 * 309.84562 * 6 5 4 31 31 H 1.09002 * 109.47398 * 185.00108 * 7 6 5 32 32 H 1.09001 * 109.47194 * 305.00288 * 7 6 5 33 33 H 1.09007 * 109.47484 * 299.99646 * 9 8 7 34 34 H 1.09004 * 109.47459 * 59.99983 * 9 8 7 35 35 H 0.97000 * 119.99632 * 180.02562 * 13 12 10 36 36 H 1.08000 * 119.90063 * 359.62654 * 19 18 5 37 37 H 1.07992 * 119.86600 * 180.02562 * 20 19 18 38 38 H 1.08000 * 120.05706 * 180.10192 * 21 20 19 39 39 H 1.08001 * 119.96045 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 6 2.0815 -0.7929 -1.2072 5 7 3.2868 -1.4403 -0.6453 6 6 4.4874 -0.6355 -0.9078 7 6 5.7333 -1.4417 -0.5355 8 8 5.8422 -2.5756 -1.3983 9 6 6.9786 -3.4005 -1.1333 10 6 6.9940 -4.5591 -2.0969 11 1 6.2137 -4.6560 -2.8373 12 6 8.0036 -5.4960 -2.0326 13 7 8.9535 -5.3781 -1.1306 14 14 8.0230 -6.9317 -3.2274 15 1 8.0989 -6.4172 -4.6183 16 1 9.2038 -7.7890 -2.9520 17 1 6.7818 -7.7301 -3.0621 18 6 3.0843 -1.6055 0.7305 19 6 3.7341 -2.4419 1.6369 20 6 3.3719 -2.4373 2.9676 21 6 2.3617 -1.6039 3.4122 22 6 1.7101 -0.7736 2.5185 23 6 2.0670 -0.7758 1.1862 24 1 -0.3633 0.4866 0.9051 25 1 -0.3633 0.5406 -0.8740 26 1 -0.3633 -1.0272 -0.0312 27 1 2.3481 -0.1204 -2.0224 28 1 1.3612 -1.5401 -1.5407 29 1 4.4521 0.2753 -0.3101 30 1 4.5259 -0.3747 -1.9654 31 1 6.6182 -0.8148 -0.6459 32 1 5.6530 -1.7781 0.4982 33 1 7.8896 -2.8145 -1.2559 34 1 6.9238 -3.7775 -0.1120 35 1 9.6639 -6.0370 -1.0857 36 1 4.5232 -3.0957 1.2959 37 1 3.8791 -3.0871 3.6652 38 1 2.0819 -1.6018 4.4553 39 1 0.9207 -0.1225 2.8642 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338908834.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:01 Heat of formation + Delta-G solvation = -10.438140 kcal Electronic energy + Delta-G solvation = -19461.575295 eV Core-core repulsion = 16562.186514 eV Total energy + Delta-G solvation = -2899.388781 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.86977 -37.03133 -36.34895 -33.78857 -32.59385 -30.13251 -29.68464 -28.81185 -26.84214 -25.17219 -22.90360 -22.57681 -22.15817 -20.53711 -20.31182 -16.69404 -16.28776 -15.82445 -15.65799 -15.42956 -15.08232 -14.90839 -14.30300 -13.68849 -13.55904 -13.28183 -13.23737 -12.82443 -12.53761 -12.30944 -12.13089 -11.80108 -11.68284 -11.48971 -11.15982 -11.04975 -10.81062 -10.72059 -10.57787 -10.35716 -9.97449 -9.21036 -9.05414 -8.79186 -8.65769 -8.08767 -7.70146 -6.06080 -4.07049 1.41642 1.51439 3.35885 3.38045 3.42506 3.73505 3.87757 4.38847 4.45995 4.69419 4.85344 4.87922 5.08828 5.14649 5.22728 5.30350 5.31858 5.46087 5.48544 5.58197 5.63702 5.73784 5.77821 5.82324 5.84989 6.01240 6.05772 6.08845 6.20482 6.28369 6.49114 6.62196 6.63977 6.88093 7.11762 7.17183 7.46627 7.48375 7.85364 8.21595 8.65964 9.07146 9.57603 11.05546 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.026534 B = 0.004564 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.998409 B = 6133.923180 C = 6586.209215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.081 4.081 3 H 0.083 0.917 4 C 0.055 3.945 5 N -0.480 5.480 6 C 0.065 3.935 7 C 0.060 3.940 8 O -0.380 6.380 9 C 0.195 3.805 10 C -0.511 4.511 11 H 0.066 0.934 12 C 0.056 3.944 13 N -0.900 5.900 14 Si 0.907 3.093 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.275 1.275 18 C 0.103 3.897 19 C -0.107 4.107 20 C -0.104 4.104 21 C -0.140 4.140 22 C -0.092 4.092 23 C -0.143 4.143 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.002 0.998 34 H 0.003 0.997 35 H 0.264 0.736 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.876 12.119 6.485 20.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.101 4.101 3 H 0.101 0.899 4 C -0.072 4.072 5 N -0.196 5.196 6 C -0.060 4.060 7 C -0.018 4.018 8 O -0.300 6.300 9 C 0.121 3.879 10 C -0.549 4.549 11 H 0.084 0.916 12 C -0.145 4.145 13 N -0.540 5.540 14 Si 0.734 3.266 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.200 1.200 18 C 0.007 3.993 19 C -0.127 4.127 20 C -0.123 4.123 21 C -0.158 4.158 22 C -0.111 4.111 23 C -0.146 4.146 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.073 0.927 36 H 0.150 0.850 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.708 11.504 6.070 19.634 hybrid contribution 0.295 -0.055 0.076 0.309 sum -14.413 11.449 6.146 19.406 Atomic orbital electron populations 1.21662 0.93568 1.02282 1.01681 1.21297 0.96804 0.98978 0.93008 0.89933 1.23277 0.91389 0.96653 0.95929 1.60017 1.03468 1.46966 1.09155 1.22269 0.88776 0.93128 1.01871 1.22366 0.94815 0.89867 0.94791 1.87944 1.49356 1.36614 1.56045 1.20168 0.82686 0.88906 0.96188 1.21024 1.09882 1.07303 1.16720 0.91596 1.24938 0.95154 0.98272 0.96122 1.69959 1.13122 1.36319 1.34578 0.86409 0.77449 0.81600 0.81094 1.20054 1.21216 1.20014 1.19583 0.95841 0.95020 0.88856 1.20826 1.00950 0.98696 0.92194 1.20977 0.97256 0.98885 0.95173 1.20989 0.97624 0.98018 0.99202 1.20282 0.99777 0.99390 0.91603 1.20986 1.00543 0.98587 0.94477 0.92567 0.92273 0.92203 0.89828 0.89278 0.93751 0.89491 0.94107 0.93920 0.98018 0.97951 0.92693 0.84963 0.85684 0.86138 0.86719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 9.12 37.16 0.34 -0.85 16 2 C -0.08 -0.90 3.60 -90.50 -0.33 -1.23 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 4 C 0.05 0.69 6.54 -2.42 -0.02 0.67 16 5 N -0.48 -7.86 5.01 -169.01 -0.85 -8.70 16 6 C 0.06 1.03 5.14 -3.82 -0.02 1.01 16 7 C 0.06 1.16 5.99 37.16 0.22 1.38 16 8 O -0.38 -9.45 10.27 -35.23 -0.36 -9.81 16 9 C 0.19 5.47 5.69 36.01 0.20 5.67 16 10 C -0.51 -15.37 9.43 -34.44 -0.32 -15.70 16 11 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 14 Si 0.91 22.24 29.54 -169.99 -5.02 17.22 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.10 1.65 5.28 -83.41 -0.44 1.21 16 19 C -0.11 -1.74 8.55 -39.27 -0.34 -2.08 16 20 C -0.10 -1.41 10.02 -39.68 -0.40 -1.80 16 21 C -0.14 -1.65 10.06 -39.53 -0.40 -2.05 16 22 C -0.09 -1.10 9.88 -39.67 -0.39 -1.49 16 23 C -0.14 -1.92 5.67 -104.04 -0.59 -2.51 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.57 8.11 -51.93 -0.42 0.15 16 27 H 0.08 0.90 7.60 -51.93 -0.39 0.51 16 28 H 0.09 1.11 7.90 -51.93 -0.41 0.70 16 29 H 0.04 0.61 8.06 -51.93 -0.42 0.20 16 30 H 0.09 1.32 7.85 -51.93 -0.41 0.91 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.04 0.83 5.23 -51.93 -0.27 0.56 16 33 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 34 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.13 2.43 7.07 -52.49 -0.37 2.06 16 37 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.11 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 320.81 15.07 4.83 4.83 Total: -1.00 -32.59 320.81 -9.27 -41.86 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -6.04 Total: -2.62 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -2.57 Total: -16.22 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: -0.11 Total: -35.28 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.36 Total: -9.81 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.59 -9.27 -41.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338908834.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.427 kcal (2) G-P(sol) polarization free energy of solvation -32.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds