Wall clock time and date at job start Mon Mar 30 2020 06:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.65742 * 2 1 4 4 C 1.54606 * 110.89805 * 236.70189 * 2 1 3 5 5 N 1.47910 * 102.62199 * 216.05932 * 4 2 1 6 6 C 1.46898 * 110.99686 * 265.48330 * 5 4 2 7 7 C 1.53000 * 109.47357 * 189.84370 * 6 5 4 8 8 O 1.42903 * 109.46726 * 64.99864 * 7 6 5 9 9 C 1.42899 * 113.99629 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47140 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99703 * 359.97438 * 10 9 8 12 12 C 1.37882 * 120.00389 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99589 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00194 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47375 * 59.99217 * 14 12 10 16 16 H 1.48502 * 109.47363 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47158 * 299.99379 * 14 12 10 18 18 C 1.40039 * 107.87832 * 27.29630 * 5 4 2 19 19 C 1.39402 * 129.95069 * 161.61621 * 18 5 4 20 20 C 1.37914 * 120.19654 * 179.65701 * 19 18 5 21 21 C 1.38304 * 120.26438 * 0.02606 * 20 19 18 22 22 C 1.38303 * 119.88211 * 0.13000 * 21 20 19 23 23 C 1.37923 * 120.08395 * 359.97438 * 22 21 20 24 24 H 1.08995 * 109.47291 * 298.26244 * 1 2 3 25 25 H 1.09001 * 109.46996 * 58.26243 * 1 2 3 26 26 H 1.09002 * 109.46885 * 178.25868 * 1 2 3 27 27 H 1.08990 * 110.77932 * 97.76992 * 4 2 1 28 28 H 1.09003 * 110.77396 * 334.33562 * 4 2 1 29 29 H 1.09002 * 109.47351 * 69.84673 * 6 5 4 30 30 H 1.09002 * 109.47308 * 309.84562 * 6 5 4 31 31 H 1.09002 * 109.47398 * 185.00108 * 7 6 5 32 32 H 1.09001 * 109.47194 * 305.00288 * 7 6 5 33 33 H 1.09007 * 109.47484 * 299.99646 * 9 8 7 34 34 H 1.09004 * 109.47459 * 59.99983 * 9 8 7 35 35 H 0.97000 * 119.99632 * 180.02562 * 13 12 10 36 36 H 1.08000 * 119.90063 * 359.62654 * 19 18 5 37 37 H 1.07992 * 119.86600 * 180.02562 * 20 19 18 38 38 H 1.08000 * 120.05706 * 180.10192 * 21 20 19 39 39 H 1.08001 * 119.96045 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 6 2.0815 -0.7929 -1.2072 5 7 3.2868 -1.4403 -0.6453 6 6 4.4874 -0.6355 -0.9078 7 6 5.7333 -1.4417 -0.5355 8 8 5.8422 -2.5756 -1.3983 9 6 6.9786 -3.4005 -1.1333 10 6 6.9940 -4.5591 -2.0969 11 1 6.2137 -4.6560 -2.8373 12 6 8.0036 -5.4960 -2.0326 13 7 8.9535 -5.3781 -1.1306 14 14 8.0230 -6.9317 -3.2274 15 1 8.0989 -6.4172 -4.6183 16 1 9.2038 -7.7890 -2.9520 17 1 6.7818 -7.7301 -3.0621 18 6 3.0843 -1.6055 0.7305 19 6 3.7341 -2.4419 1.6369 20 6 3.3719 -2.4373 2.9676 21 6 2.3617 -1.6039 3.4122 22 6 1.7101 -0.7736 2.5185 23 6 2.0670 -0.7758 1.1862 24 1 -0.3633 0.4866 0.9051 25 1 -0.3633 0.5406 -0.8740 26 1 -0.3633 -1.0272 -0.0312 27 1 2.3481 -0.1204 -2.0224 28 1 1.3612 -1.5401 -1.5407 29 1 4.4521 0.2753 -0.3101 30 1 4.5259 -0.3747 -1.9654 31 1 6.6182 -0.8148 -0.6459 32 1 5.6530 -1.7781 0.4982 33 1 7.8896 -2.8145 -1.2559 34 1 6.9238 -3.7775 -0.1120 35 1 9.6639 -6.0370 -1.0857 36 1 4.5232 -3.0957 1.2959 37 1 3.8791 -3.0871 3.6652 38 1 2.0819 -1.6018 4.4553 39 1 0.9207 -0.1225 2.8642 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338908834.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:01 Heat of formation + Delta-G solvation = -30.771764 kcal Electronic energy + Delta-G solvation = -19462.457027 eV Core-core repulsion = 16562.186514 eV Total energy + Delta-G solvation = -2900.270513 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.92636 -38.64593 -37.66401 -35.16812 -34.54893 -31.39246 -30.70640 -30.10657 -28.86088 -26.17095 -24.54697 -23.90794 -23.76541 -21.69801 -21.26806 -18.67161 -17.80875 -17.30776 -17.00277 -16.71519 -16.40863 -16.18146 -16.00358 -15.14949 -15.00632 -14.55107 -14.40430 -14.05495 -13.60587 -13.52193 -13.44642 -13.21757 -13.00114 -12.85155 -12.71180 -12.46875 -12.35272 -12.22936 -12.03041 -11.63784 -11.55459 -11.29176 -10.87202 -10.29489 -10.22666 -9.72694 -8.79671 -8.33018 -6.45528 0.38137 0.44994 1.38144 1.43503 1.51855 2.33858 2.66121 2.82934 3.00398 3.17359 3.56491 3.75918 3.96228 4.03876 4.13428 4.22889 4.25339 4.37431 4.44899 4.50501 4.53898 4.58858 4.67126 4.75697 4.81943 4.87711 4.91877 4.98826 5.07129 5.15587 5.16666 5.36756 5.48585 5.53423 5.57460 5.60179 5.86924 5.94978 6.03152 6.35364 6.53794 6.82156 7.26462 8.79299 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.026534 B = 0.004564 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.998409 B = 6133.923180 C = 6586.209215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 H 0.097 0.903 4 C 0.051 3.949 5 N -0.513 5.513 6 C 0.075 3.925 7 C 0.051 3.949 8 O -0.393 6.393 9 C 0.211 3.789 10 C -0.548 4.548 11 H 0.059 0.941 12 C 0.007 3.993 13 N -0.931 5.931 14 Si 0.984 3.016 15 H -0.264 1.264 16 H -0.273 1.273 17 H -0.267 1.267 18 C 0.076 3.924 19 C -0.138 4.138 20 C -0.112 4.112 21 C -0.132 4.132 22 C -0.089 4.089 23 C -0.144 4.144 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.037 0.963 33 H -0.016 1.016 34 H -0.021 1.021 35 H 0.271 0.729 36 H 0.091 0.909 37 H 0.136 0.864 38 H 0.155 0.845 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.827 13.121 6.579 22.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.092 4.092 3 H 0.115 0.885 4 C -0.075 4.075 5 N -0.230 5.230 6 C -0.050 4.050 7 C -0.026 4.026 8 O -0.313 6.313 9 C 0.136 3.864 10 C -0.585 4.585 11 H 0.078 0.922 12 C -0.191 4.191 13 N -0.570 5.570 14 Si 0.806 3.194 15 H -0.188 1.188 16 H -0.197 1.197 17 H -0.192 1.192 18 C -0.021 4.021 19 C -0.159 4.159 20 C -0.131 4.131 21 C -0.150 4.150 22 C -0.107 4.107 23 C -0.147 4.147 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.119 0.881 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.002 0.998 34 H -0.003 1.003 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.154 0.846 38 H 0.172 0.828 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.676 12.530 6.173 21.753 hybrid contribution 0.885 -0.316 0.146 0.951 sum -15.791 12.214 6.319 20.940 Atomic orbital electron populations 1.21641 0.91638 1.02105 1.03277 1.21302 0.98214 0.98830 0.90811 0.88473 1.23388 0.89979 0.96975 0.97147 1.59948 1.04750 1.48307 1.10039 1.22162 0.87182 0.93012 1.02633 1.22691 0.97466 0.88570 0.93919 1.87891 1.47910 1.38087 1.57417 1.19770 0.83084 0.88937 0.94587 1.21334 1.10695 1.08915 1.17577 0.92241 1.25966 0.94140 1.01098 0.97904 1.70070 1.13580 1.37483 1.35880 0.85233 0.78077 0.77490 0.78603 1.18847 1.19739 1.19215 1.19722 0.97275 0.96218 0.88836 1.20741 1.01381 0.99673 0.94060 1.21167 0.98088 0.99682 0.94117 1.21382 0.96125 0.96549 1.00923 1.20711 0.99922 0.99168 0.90890 1.21330 0.99462 0.98042 0.95840 0.91138 0.90528 0.93265 0.88053 0.89757 0.91229 0.88766 0.93303 0.94455 0.99832 1.00347 0.92018 0.89036 0.84598 0.82755 0.83384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 9.12 71.98 0.66 -1.21 16 2 C -0.07 -1.41 3.60 -10.72 -0.04 -1.45 16 3 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 4 C 0.05 1.23 6.54 86.66 0.57 1.79 16 5 N -0.51 -17.01 5.01 -688.64 -3.45 -20.46 16 6 C 0.08 2.40 5.14 86.30 0.44 2.84 16 7 C 0.05 2.07 5.99 71.98 0.43 2.50 16 8 O -0.39 -20.64 10.27 -148.98 -1.53 -22.17 16 9 C 0.21 12.57 5.69 71.24 0.41 12.98 16 10 C -0.55 -34.14 9.43 25.60 0.24 -33.90 16 11 H 0.06 3.69 7.81 -2.91 -0.02 3.66 16 12 C 0.01 0.44 5.46 84.66 0.46 0.90 16 13 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 14 Si 0.98 45.80 29.54 68.60 2.03 47.83 16 15 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 C 0.08 2.45 5.28 38.28 0.20 2.66 16 19 C -0.14 -4.80 8.55 22.47 0.19 -4.61 16 20 C -0.11 -3.05 10.02 22.21 0.22 -2.82 16 21 C -0.13 -2.81 10.06 22.30 0.22 -2.58 16 22 C -0.09 -1.85 9.88 22.21 0.22 -1.63 16 23 C -0.14 -3.61 5.67 -19.49 -0.11 -3.72 16 24 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.05 0.82 8.11 -2.39 -0.02 0.80 16 27 H 0.10 2.00 7.60 -2.39 -0.02 1.98 16 28 H 0.08 2.05 7.90 -2.39 -0.02 2.03 16 29 H 0.07 1.85 8.06 -2.39 -0.02 1.83 16 30 H 0.09 2.81 7.85 -2.39 -0.02 2.79 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.04 1.57 5.23 -2.39 -0.01 1.55 16 33 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 34 H -0.02 -1.33 8.14 -2.38 -0.02 -1.35 16 35 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.09 3.81 7.07 -2.91 -0.02 3.79 16 37 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 38 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 39 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -73.11 320.81 2.46 -70.65 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.01 Total: 9.72 kcal Atomic # 6 Polarization: -32.36 SS G_CDS: 4.12 Total: -28.25 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -3.16 Total: -77.78 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -1.53 Total: -22.17 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -73.11 2.46 -70.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338908834.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.879 kcal (2) G-P(sol) polarization free energy of solvation -73.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds