Wall clock time and date at job start Mon Mar 30 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47150 * 2 1 4 4 C 1.53001 * 109.47033 * 239.99667 * 2 1 3 5 5 C 1.50706 * 109.46607 * 65.00210 * 4 2 1 6 6 C 1.38238 * 119.99744 * 90.00198 * 5 4 2 7 7 C 1.38234 * 119.99693 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00240 * 359.97438 * 7 6 5 9 9 C 1.38233 * 120.00037 * 0.26327 * 8 7 6 10 10 C 1.38234 * 120.00173 * 269.97579 * 5 4 2 11 11 C 1.50706 * 109.46958 * 120.00340 * 2 1 3 12 12 O 1.21282 * 120.00107 * 119.99898 * 11 2 1 13 13 N 1.34779 * 119.99565 * 299.99604 * 11 2 1 14 14 C 1.46496 * 119.99814 * 179.97438 * 13 11 2 15 15 C 1.52995 * 109.47425 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.47557 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99474 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00026 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99532 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00153 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46749 * 90.00413 * 20 18 16 22 22 H 1.48497 * 109.47340 * 209.99912 * 20 18 16 23 23 H 1.48493 * 109.47366 * 330.00316 * 20 18 16 24 24 H 1.09006 * 109.47483 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47311 * 300.00101 * 1 2 3 26 26 H 1.08997 * 109.46926 * 59.99919 * 1 2 3 27 27 H 1.08997 * 109.47212 * 305.00912 * 4 2 1 28 28 H 1.08995 * 109.47163 * 185.00323 * 4 2 1 29 29 H 1.07997 * 119.99846 * 359.97438 * 6 5 4 30 30 H 1.07999 * 119.99751 * 179.97438 * 7 6 5 31 31 H 1.08002 * 119.99744 * 179.97438 * 8 7 6 32 32 H 1.07998 * 120.00395 * 179.72811 * 9 8 7 33 33 H 1.07999 * 120.00025 * 0.02562 * 10 5 4 34 34 H 0.96993 * 120.00164 * 0.02562 * 13 11 2 35 35 H 1.08998 * 109.47374 * 300.00354 * 14 13 11 36 36 H 1.09004 * 109.47228 * 59.99794 * 14 13 11 37 37 H 1.08998 * 109.47151 * 300.00512 * 15 14 13 38 38 H 1.08997 * 109.46864 * 60.00363 * 15 14 13 39 39 H 0.97000 * 119.99127 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6412 0.0570 -2.4766 6 6 2.4814 1.0330 -2.9792 7 6 2.1159 1.7466 -4.1053 8 6 0.9106 1.4839 -4.7290 9 6 0.0682 0.5114 -4.2235 10 6 0.4357 -0.2052 -3.1000 11 6 2.0323 -0.7105 1.2305 12 8 2.7295 -1.6966 1.1192 13 7 1.7067 -0.2500 2.4546 14 6 2.1945 -0.9409 3.6507 15 6 1.6852 -0.2193 4.9000 16 6 2.1875 -0.9297 6.1305 17 1 2.8083 -1.8079 6.0313 18 6 1.8545 -0.4586 7.3827 19 7 2.2933 -1.0783 8.4565 20 14 0.7813 1.0607 7.5541 21 1 -0.6466 0.6555 7.5994 22 1 1.1327 1.7763 8.8070 23 1 1.0046 1.9581 6.3922 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6052 -1.7198 -1.2952 28 1 3.1262 -0.7996 -1.2056 29 1 3.4233 1.2378 -2.4921 30 1 2.7721 2.5093 -4.4978 31 1 0.6249 2.0418 -5.6086 32 1 -0.8755 0.3092 -4.7082 33 1 -0.2207 -0.9677 -2.7073 34 1 1.1488 0.5384 2.5436 35 1 1.8307 -1.9684 3.6506 36 1 3.2845 -0.9415 3.6509 37 1 2.0493 0.8081 4.8999 38 1 0.5952 -0.2185 4.9000 39 1 2.0593 -0.7466 9.3375 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345367946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:18 Heat of formation + Delta-G solvation = -38.930180 kcal Electronic energy + Delta-G solvation = -18563.268612 eV Core-core repulsion = 15662.644324 eV Total energy + Delta-G solvation = -2900.624289 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.02568 -39.07005 -35.27676 -34.77521 -32.81634 -31.28103 -31.06302 -29.84114 -26.86853 -25.29707 -23.33266 -22.67417 -21.20559 -20.76899 -19.52998 -17.22964 -16.88715 -16.61058 -15.63749 -15.40282 -15.19460 -14.99307 -14.21773 -14.04974 -13.80028 -13.58475 -13.39406 -12.87030 -12.80313 -12.60033 -12.44889 -12.20328 -11.51501 -11.41638 -11.28425 -11.18610 -11.13551 -10.97404 -10.39833 -10.25620 -9.96960 -9.46472 -9.28519 -9.11182 -8.86085 -8.64744 -8.52130 -6.11860 -4.11992 1.14102 1.18762 2.94639 3.24426 3.32135 3.33363 3.48393 3.68810 4.36908 4.60443 4.63660 4.76917 4.79785 4.90477 4.92094 5.05787 5.21054 5.29420 5.29986 5.39192 5.59166 5.65512 5.68816 5.82726 5.87624 6.04784 6.08228 6.13679 6.20431 6.26308 6.29881 6.48019 6.55573 6.76366 6.80439 7.13329 7.22552 7.66066 7.91356 8.42886 8.58160 8.92565 9.48283 11.01241 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.040966 B = 0.003230 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.332205 B = 8665.524065 C = 8933.774470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 H 0.095 0.905 4 C -0.063 4.063 5 C -0.075 4.075 6 C -0.117 4.117 7 C -0.119 4.119 8 C -0.128 4.128 9 C -0.121 4.121 10 C -0.115 4.115 11 C 0.510 3.490 12 O -0.547 6.547 13 N -0.725 5.725 14 C 0.129 3.871 15 C -0.022 4.022 16 C -0.523 4.523 17 H 0.076 0.924 18 C 0.069 3.931 19 N -0.899 5.899 20 Si 0.882 3.118 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.266 1.266 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.396 0.604 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.021 0.979 38 H 0.017 0.983 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.163 7.058 -24.978 26.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 H 0.113 0.887 4 C -0.101 4.101 5 C -0.075 4.075 6 C -0.135 4.135 7 C -0.137 4.137 8 C -0.146 4.146 9 C -0.139 4.139 10 C -0.133 4.133 11 C 0.295 3.705 12 O -0.425 6.425 13 N -0.375 5.375 14 C 0.007 3.993 15 C -0.060 4.060 16 C -0.561 4.561 17 H 0.094 0.906 18 C -0.133 4.133 19 N -0.537 5.537 20 Si 0.710 3.290 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.191 1.191 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.229 0.771 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.040 0.960 38 H 0.035 0.965 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.650 6.336 -24.818 26.032 hybrid contribution -0.837 1.223 0.355 1.523 sum -5.486 7.558 -24.462 26.185 Atomic orbital electron populations 1.21865 0.93012 1.02817 1.02742 1.21268 0.97688 1.00789 0.92910 0.88667 1.20424 1.02304 0.98085 0.89272 1.19955 0.94469 0.96500 0.96571 1.21120 0.99770 0.96067 0.96566 1.21145 0.96839 0.99707 0.96057 1.21130 0.94838 0.98500 1.00171 1.21148 0.99624 0.96504 0.96586 1.21120 0.96303 1.00036 0.95867 1.20523 0.80439 0.84765 0.84763 1.90683 1.38357 1.26567 1.86937 1.46335 1.52979 1.31832 1.06388 1.21501 0.98926 0.96236 0.82633 1.19791 0.96409 0.96579 0.93190 1.20927 1.32763 1.13782 0.88656 0.90635 1.25007 0.95671 0.96887 0.95753 1.69911 1.45418 1.40398 0.97961 0.86745 0.80991 0.83568 0.77728 1.20222 1.21263 1.19090 0.91986 0.91976 0.91291 0.90192 0.89976 0.86004 0.86214 0.86365 0.86222 0.85973 0.77105 0.92013 0.91996 0.96034 0.96463 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.66 37.16 0.32 -1.11 16 2 C -0.11 -1.20 2.71 -91.77 -0.25 -1.45 16 3 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.06 -0.71 4.19 -27.88 -0.12 -0.82 16 5 C -0.07 -0.74 4.71 -104.62 -0.49 -1.24 16 6 C -0.12 -1.10 9.70 -39.58 -0.38 -1.49 16 7 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 8 C -0.13 -1.03 10.05 -39.58 -0.40 -1.43 16 9 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 10 C -0.12 -1.05 7.97 -39.58 -0.32 -1.36 16 11 C 0.51 8.12 7.15 -10.98 -0.08 8.04 16 12 O -0.55 -10.86 15.92 5.56 0.09 -10.77 16 13 N -0.73 -11.84 5.45 -60.30 -0.33 -12.16 16 14 C 0.13 2.64 5.61 -4.05 -0.02 2.62 16 15 C -0.02 -0.50 4.16 -27.88 -0.12 -0.62 16 16 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 17 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 20 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.58 7.56 -51.92 -0.39 0.18 16 26 H 0.07 0.60 6.27 -51.93 -0.33 0.27 16 27 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 28 H 0.08 1.00 7.90 -51.93 -0.41 0.59 16 29 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.12 0.98 8.04 -52.49 -0.42 0.56 16 34 H 0.40 5.40 7.89 -40.82 -0.32 5.08 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 38 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 325.30 15.07 4.90 4.90 Total: -1.00 -32.33 325.30 -8.34 -40.67 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.03 Total: 2.42 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -3.08 Total: -14.80 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.45 Total: -38.78 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.33 -8.34 -40.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345367946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.742 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds