Wall clock time and date at job start Mon Mar 30 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47150 * 2 1 4 4 C 1.53001 * 109.47033 * 239.99667 * 2 1 3 5 5 C 1.50706 * 109.46607 * 65.00210 * 4 2 1 6 6 C 1.38238 * 119.99744 * 90.00198 * 5 4 2 7 7 C 1.38234 * 119.99693 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00240 * 359.97438 * 7 6 5 9 9 C 1.38233 * 120.00037 * 0.26327 * 8 7 6 10 10 C 1.38234 * 120.00173 * 269.97579 * 5 4 2 11 11 C 1.50706 * 109.46958 * 120.00340 * 2 1 3 12 12 O 1.21282 * 120.00107 * 119.99898 * 11 2 1 13 13 N 1.34779 * 119.99565 * 299.99604 * 11 2 1 14 14 C 1.46496 * 119.99814 * 179.97438 * 13 11 2 15 15 C 1.52995 * 109.47425 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.47557 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99474 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00026 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99532 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00153 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46749 * 90.00413 * 20 18 16 22 22 H 1.48497 * 109.47340 * 209.99912 * 20 18 16 23 23 H 1.48493 * 109.47366 * 330.00316 * 20 18 16 24 24 H 1.09006 * 109.47483 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47311 * 300.00101 * 1 2 3 26 26 H 1.08997 * 109.46926 * 59.99919 * 1 2 3 27 27 H 1.08997 * 109.47212 * 305.00912 * 4 2 1 28 28 H 1.08995 * 109.47163 * 185.00323 * 4 2 1 29 29 H 1.07997 * 119.99846 * 359.97438 * 6 5 4 30 30 H 1.07999 * 119.99751 * 179.97438 * 7 6 5 31 31 H 1.08002 * 119.99744 * 179.97438 * 8 7 6 32 32 H 1.07998 * 120.00395 * 179.72811 * 9 8 7 33 33 H 1.07999 * 120.00025 * 0.02562 * 10 5 4 34 34 H 0.96993 * 120.00164 * 0.02562 * 13 11 2 35 35 H 1.08998 * 109.47374 * 300.00354 * 14 13 11 36 36 H 1.09004 * 109.47228 * 59.99794 * 14 13 11 37 37 H 1.08998 * 109.47151 * 300.00512 * 15 14 13 38 38 H 1.08997 * 109.46864 * 60.00363 * 15 14 13 39 39 H 0.97000 * 119.99127 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6412 0.0570 -2.4766 6 6 2.4814 1.0330 -2.9792 7 6 2.1159 1.7466 -4.1053 8 6 0.9106 1.4839 -4.7290 9 6 0.0682 0.5114 -4.2235 10 6 0.4357 -0.2052 -3.1000 11 6 2.0323 -0.7105 1.2305 12 8 2.7295 -1.6966 1.1192 13 7 1.7067 -0.2500 2.4546 14 6 2.1945 -0.9409 3.6507 15 6 1.6852 -0.2193 4.9000 16 6 2.1875 -0.9297 6.1305 17 1 2.8083 -1.8079 6.0313 18 6 1.8545 -0.4586 7.3827 19 7 2.2933 -1.0783 8.4565 20 14 0.7813 1.0607 7.5541 21 1 -0.6466 0.6555 7.5994 22 1 1.1327 1.7763 8.8070 23 1 1.0046 1.9581 6.3922 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6052 -1.7198 -1.2952 28 1 3.1262 -0.7996 -1.2056 29 1 3.4233 1.2378 -2.4921 30 1 2.7721 2.5093 -4.4978 31 1 0.6249 2.0418 -5.6086 32 1 -0.8755 0.3092 -4.7082 33 1 -0.2207 -0.9677 -2.7073 34 1 1.1488 0.5384 2.5436 35 1 1.8307 -1.9684 3.6506 36 1 3.2845 -0.9415 3.6509 37 1 2.0493 0.8081 4.8999 38 1 0.5952 -0.2185 4.9000 39 1 2.0593 -0.7466 9.3375 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345367946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:18 Heat of formation + Delta-G solvation = -58.900876 kcal Electronic energy + Delta-G solvation = -18564.134607 eV Core-core repulsion = 15662.644324 eV Total energy + Delta-G solvation = -2901.490283 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.11636 -39.97375 -36.74297 -35.89221 -34.79578 -32.42329 -31.75306 -31.27215 -27.65585 -27.04627 -24.47645 -23.33434 -22.65775 -21.98767 -20.73304 -19.00568 -18.21338 -17.41818 -16.80633 -16.69140 -16.25319 -16.05608 -15.88259 -15.28892 -15.05155 -14.60727 -14.50517 -14.18724 -13.89708 -13.62042 -13.35518 -13.25919 -13.04559 -13.02043 -12.28310 -12.18978 -12.13849 -12.04542 -11.82607 -11.76426 -11.72659 -11.52155 -10.79525 -10.73603 -10.04497 -9.75130 -9.55283 -8.30851 -6.38362 0.48261 0.55567 1.38773 1.41597 1.52871 1.65804 2.27571 2.36438 2.93674 3.04243 3.64054 3.87628 3.92665 4.13950 4.16663 4.23671 4.33022 4.37367 4.41508 4.47756 4.60106 4.70706 4.73975 4.83836 4.89101 4.94253 5.12046 5.14997 5.22861 5.24827 5.29616 5.39466 5.43263 5.63729 5.64447 5.68688 5.78816 6.17906 6.21372 6.61089 6.70569 7.26124 7.29544 8.86081 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.040966 B = 0.003230 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.332205 B = 8665.524065 C = 8933.774470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.115 0.885 4 C -0.058 4.058 5 C -0.086 4.086 6 C -0.130 4.130 7 C -0.126 4.126 8 C -0.131 4.131 9 C -0.125 4.125 10 C -0.123 4.123 11 C 0.508 3.492 12 O -0.591 6.591 13 N -0.716 5.716 14 C 0.144 3.856 15 C -0.012 4.012 16 C -0.540 4.540 17 H 0.027 0.973 18 C 0.003 3.997 19 N -0.951 5.951 20 Si 0.960 3.040 21 H -0.264 1.264 22 H -0.287 1.287 23 H -0.236 1.236 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.125 0.875 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.129 0.871 34 H 0.413 0.587 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.036 0.964 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.317 9.944 -27.067 29.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 H 0.133 0.867 4 C -0.096 4.096 5 C -0.086 4.086 6 C -0.148 4.148 7 C -0.144 4.144 8 C -0.149 4.149 9 C -0.143 4.143 10 C -0.141 4.141 11 C 0.296 3.704 12 O -0.472 6.472 13 N -0.367 5.367 14 C 0.020 3.980 15 C -0.050 4.050 16 C -0.579 4.579 17 H 0.046 0.954 18 C -0.194 4.194 19 N -0.591 5.591 20 Si 0.782 3.218 21 H -0.189 1.189 22 H -0.213 1.213 23 H -0.159 1.159 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.143 0.857 30 H 0.155 0.845 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.147 0.853 34 H 0.250 0.750 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.818 9.242 -26.945 29.290 hybrid contribution -0.088 0.224 0.955 0.985 sum -6.906 9.466 -25.990 28.509 Atomic orbital electron populations 1.21868 0.91186 1.02903 1.04062 1.21254 0.98968 1.00908 0.90201 0.86668 1.20310 1.01189 0.97915 0.90143 1.19834 0.95309 0.97041 0.96418 1.21267 0.99974 0.96333 0.97247 1.21412 0.97404 0.99889 0.95651 1.21470 0.94479 0.98317 1.00633 1.21438 1.00496 0.96148 0.96202 1.21265 0.96126 1.00419 0.96306 1.21370 0.79283 0.84163 0.85609 1.90668 1.40286 1.28712 1.87544 1.46097 1.53151 1.32160 1.05285 1.21015 0.97661 0.95537 0.83825 1.19645 0.97229 0.96602 0.91509 1.21269 1.32317 1.12939 0.91360 0.95436 1.26105 0.97327 1.00947 0.95006 1.70085 1.47411 1.42825 0.98803 0.85520 0.78782 0.78828 0.78639 1.18911 1.21260 1.15917 0.92578 0.90931 0.89653 0.91280 0.91593 0.85739 0.84464 0.84200 0.84225 0.85293 0.75023 0.93957 0.94000 0.94496 0.94568 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.66 71.98 0.62 -1.80 16 2 C -0.09 -1.96 2.71 -11.54 -0.03 -1.99 16 3 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 4 C -0.06 -1.27 4.19 29.85 0.13 -1.14 16 5 C -0.09 -1.59 4.71 -19.86 -0.09 -1.68 16 6 C -0.13 -2.24 9.70 22.27 0.22 -2.03 16 7 C -0.13 -1.82 10.05 22.27 0.22 -1.59 16 8 C -0.13 -1.73 10.05 22.27 0.22 -1.50 16 9 C -0.12 -1.71 10.05 22.27 0.22 -1.49 16 10 C -0.12 -1.99 7.97 22.27 0.18 -1.81 16 11 C 0.51 15.87 7.15 87.66 0.63 16.50 16 12 O -0.59 -24.01 15.92 -3.04 -0.05 -24.05 16 13 N -0.72 -22.37 5.45 -463.06 -2.52 -24.89 16 14 C 0.14 5.92 5.61 86.38 0.48 6.40 16 15 C -0.01 -0.54 4.16 29.85 0.12 -0.42 16 16 C -0.54 -31.05 9.66 25.60 0.25 -30.80 16 17 H 0.03 1.78 7.99 -2.91 -0.02 1.75 16 18 C 0.00 0.18 5.47 84.65 0.46 0.65 16 19 N -0.95 -59.56 13.96 21.45 0.30 -59.26 16 20 Si 0.96 42.22 27.47 68.60 1.88 44.11 16 21 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 22 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.24 -9.19 6.54 99.48 0.65 -8.54 16 24 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 25 H 0.07 1.09 7.56 -2.38 -0.02 1.07 16 26 H 0.08 1.21 6.27 -2.39 -0.01 1.20 16 27 H 0.07 1.63 8.08 -2.39 -0.02 1.61 16 28 H 0.07 1.63 7.90 -2.39 -0.02 1.61 16 29 H 0.12 1.97 8.06 -2.91 -0.02 1.95 16 30 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 31 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 32 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 33 H 0.13 1.82 8.04 -2.91 -0.02 1.80 16 34 H 0.41 10.03 7.89 -92.71 -0.73 9.30 16 35 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.04 1.54 7.20 -2.39 -0.02 1.53 16 38 H 0.04 1.49 7.57 -2.39 -0.02 1.47 16 39 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -72.37 325.30 3.48 -68.89 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.24 Total: 17.91 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: 3.63 Total: -22.70 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -2.22 Total: -84.15 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.05 Total: -24.05 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.88 Total: 44.11 kcal Total: -72.37 3.48 -68.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345367946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.987 kcal (2) G-P(sol) polarization free energy of solvation -72.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds