Wall clock time and date at job start Mon Mar 30 2020 07:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31807 * 119.12369 * 2 1 4 4 C 1.32315 * 120.81677 * 179.97438 * 3 2 1 5 5 C 1.38613 * 119.10667 * 0.02562 * 4 3 2 6 6 C 1.38579 * 118.39748 * 0.02562 * 5 4 3 7 7 C 1.50708 * 120.44457 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.47133 * 95.00049 * 7 6 5 9 9 C 1.36936 * 120.00219 * 89.99490 * 8 7 6 10 10 H 1.07999 * 120.00493 * 217.03667 * 9 8 7 11 11 C 1.38819 * 120.00062 * 37.03444 * 9 8 7 12 12 N 1.31621 * 119.99354 * 21.42218 * 11 9 8 13 13 Si 1.86793 * 120.00173 * 201.43004 * 11 9 8 14 14 H 1.48496 * 109.47547 * 59.99976 * 13 11 9 15 15 H 1.48503 * 109.47167 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46895 * 299.99650 * 13 11 9 17 17 C 1.46496 * 120.00092 * 269.99954 * 8 7 6 18 18 C 1.54266 * 110.03438 * 241.31614 * 17 8 7 19 19 C 1.54960 * 104.16087 * 217.13670 * 18 17 8 20 20 C 1.54889 * 102.78084 * 37.88208 * 19 18 17 21 21 C 1.53876 * 110.03521 * 124.09532 * 17 8 7 22 22 N 1.31780 * 119.11960 * 179.97438 * 2 1 3 23 23 H 1.09003 * 109.46963 * 90.00095 * 1 2 3 24 24 H 1.08996 * 109.47260 * 209.99472 * 1 2 3 25 25 H 1.08994 * 109.47498 * 330.00220 * 1 2 3 26 26 H 1.08007 * 120.44845 * 180.02562 * 4 3 2 27 27 H 1.08004 * 120.80338 * 179.72322 * 5 4 3 28 28 H 1.09000 * 109.46499 * 214.99881 * 7 6 5 29 29 H 1.08993 * 109.47442 * 334.99719 * 7 6 5 30 30 H 0.97002 * 119.99347 * 174.92443 * 12 11 9 31 31 H 1.09001 * 110.01886 * 2.70053 * 17 8 7 32 32 H 1.09005 * 110.48161 * 335.77603 * 18 17 8 33 33 H 1.08999 * 110.49218 * 98.42235 * 18 17 8 34 34 H 1.09004 * 110.72046 * 279.56758 * 19 18 17 35 35 H 1.09000 * 110.92509 * 156.29080 * 19 18 17 36 36 H 1.08998 * 110.48864 * 203.40636 * 20 19 18 37 37 H 1.08999 * 110.59690 * 80.81778 * 20 19 18 38 38 H 1.09001 * 110.02865 * 238.56763 * 21 17 8 39 39 H 1.08996 * 110.03258 * 359.95059 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4710 1.1905 0.0005 5 6 4.1808 -0.0001 0.0005 6 6 3.4712 -1.1904 -0.0006 7 6 4.1961 -2.5117 -0.0012 8 7 4.3249 -2.9986 1.3744 9 6 3.3494 -3.7944 1.9133 10 1 3.0777 -3.6866 2.9530 11 6 2.7096 -4.7396 1.1232 12 7 3.2847 -5.1749 0.0222 13 14 1.0326 -5.3935 1.6224 14 1 0.0641 -4.2700 1.6928 15 1 0.5686 -6.3841 0.6181 16 1 1.1317 -6.0458 2.9527 17 6 5.4973 -2.6343 2.1737 18 6 6.2787 -3.9026 2.5745 19 6 6.7743 -3.6041 4.0120 20 6 5.5799 -2.8392 4.6344 21 6 5.0535 -1.9581 3.4827 22 7 2.1483 -1.1512 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5137 25 1 -0.3634 0.8899 0.5138 26 1 3.9906 2.1374 0.0009 27 1 5.2608 -0.0002 -0.0036 28 1 3.6330 -3.2347 -0.5914 29 1 5.1875 -2.3820 -0.4351 30 1 2.8730 -5.8878 -0.4908 31 1 6.1417 -1.9627 1.6063 32 1 5.6217 -4.7724 2.5706 33 1 7.1234 -4.0584 1.9035 34 1 7.6655 -2.9769 3.9902 35 1 6.9674 -4.5282 4.5570 36 1 5.9153 -2.2197 5.4661 37 1 4.8091 -3.5354 4.9650 38 1 5.4831 -0.9586 3.5509 39 1 3.9658 -1.9002 3.5229 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351642116.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:37 Heat of formation + Delta-G solvation = 56.338867 kcal Electronic energy + Delta-G solvation = -20260.402369 eV Core-core repulsion = 17396.202007 eV Total energy + Delta-G solvation = -2864.200362 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.33283 -37.77743 -34.78131 -32.85965 -32.68023 -30.89906 -28.13978 -27.89841 -27.23311 -26.09590 -23.34060 -22.45237 -20.93023 -19.94505 -19.12947 -16.91769 -16.55748 -15.64342 -15.18785 -14.71351 -14.66774 -14.53898 -14.14608 -13.45365 -13.10306 -12.83013 -12.62573 -12.52180 -12.16965 -12.00055 -11.23022 -11.14435 -10.89300 -10.67524 -10.52076 -10.43159 -10.31768 -10.28961 -10.10607 -10.07381 -9.91240 -9.74202 -9.52818 -8.77138 -8.49014 -8.47237 -6.60628 -5.84097 -3.35492 1.54561 1.79068 3.40109 3.45506 3.51412 4.33711 4.51656 4.52635 4.77924 5.17619 5.29509 5.35526 5.41186 5.49475 5.58175 5.72251 5.82173 5.86069 5.87694 5.93920 6.07460 6.23796 6.25197 6.26783 6.38114 6.48269 6.48607 6.54898 6.60903 6.65408 6.80914 6.92594 7.08882 7.16385 7.33771 7.51138 7.77511 7.85095 8.49964 8.87269 9.12767 9.77644 10.31701 11.19611 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.014170 B = 0.009559 C = 0.006756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.463478 B = 2928.606673 C = 4143.489956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.303 3.697 3 N -0.545 5.545 4 C 0.134 3.866 5 C -0.243 4.243 6 C 0.186 3.814 7 C 0.179 3.821 8 N -0.560 5.560 9 C -0.250 4.250 10 H 0.059 0.941 11 C 0.026 3.974 12 N -0.884 5.884 13 Si 0.898 3.102 14 H -0.279 1.279 15 H -0.291 1.291 16 H -0.284 1.284 17 C 0.171 3.829 18 C -0.128 4.128 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.134 4.134 22 N -0.492 5.492 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.154 0.846 27 H 0.133 0.867 28 H 0.118 0.882 29 H 0.046 0.954 30 H 0.257 0.743 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.062 0.938 38 H 0.042 0.958 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.964 7.658 1.647 8.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.035 3.965 3 N -0.262 5.262 4 C -0.030 4.030 5 C -0.266 4.266 6 C 0.037 3.963 7 C 0.051 3.949 8 N -0.278 5.278 9 C -0.379 4.379 10 H 0.077 0.923 11 C -0.175 4.175 12 N -0.526 5.526 13 Si 0.728 3.272 14 H -0.205 1.205 15 H -0.217 1.217 16 H -0.210 1.210 17 C 0.064 3.936 18 C -0.167 4.167 19 C -0.161 4.161 20 C -0.154 4.154 21 C -0.173 4.173 22 N -0.207 5.207 23 H 0.096 0.904 24 H 0.101 0.899 25 H 0.095 0.905 26 H 0.171 0.829 27 H 0.151 0.849 28 H 0.135 0.865 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.905 7.524 1.480 7.901 hybrid contribution 0.143 -0.153 0.325 0.387 sum 2.047 7.371 1.805 7.860 Atomic orbital electron populations 1.20460 0.86859 1.03502 1.03068 1.23225 0.97874 0.84097 0.91274 1.68117 1.10038 1.30895 1.17112 1.22932 0.89972 0.98053 0.92088 1.22734 1.02196 0.94799 1.06882 1.23617 0.89440 0.98161 0.85091 1.20163 0.96296 0.88771 0.89627 1.43798 1.19355 1.53960 1.10695 1.18755 1.11786 1.11617 0.95747 0.92305 1.25077 0.98898 0.96091 0.97394 1.69838 1.38187 1.26956 1.17608 0.86449 0.85142 0.78195 0.77453 1.20489 1.21696 1.21047 1.21093 0.87950 0.93504 0.91053 1.22781 0.98974 1.01310 0.93671 1.22444 0.97087 0.98988 0.97614 1.22234 0.97755 0.98375 0.97060 1.22569 1.01623 0.97080 0.96064 1.68318 1.10436 1.28844 1.13083 0.90406 0.89861 0.90491 0.82869 0.84863 0.86486 0.93536 0.93256 0.93371 0.89494 0.93476 0.92862 0.92750 0.93425 0.91921 0.93894 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 10.32 36.00 0.37 -0.88 16 2 C 0.30 5.92 7.64 -157.20 -1.20 4.72 16 3 N -0.54 -10.00 10.33 -10.72 -0.11 -10.11 16 4 C 0.13 2.20 11.30 -17.21 -0.19 2.00 16 5 C -0.24 -4.25 9.84 -39.32 -0.39 -4.64 16 6 C 0.19 3.92 6.41 -82.24 -0.53 3.40 16 7 C 0.18 4.04 5.61 -5.19 -0.03 4.01 16 8 N -0.56 -13.01 2.37 -165.75 -0.39 -13.40 16 9 C -0.25 -6.45 7.75 -15.06 -0.12 -6.56 16 10 H 0.06 1.57 7.00 -52.49 -0.37 1.20 16 11 C 0.03 0.70 4.96 -17.43 -0.09 0.62 16 12 N -0.88 -24.30 11.43 55.49 0.63 -23.67 16 13 Si 0.90 21.65 29.61 -169.99 -5.03 16.62 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 C 0.17 3.41 3.41 -66.81 -0.23 3.18 16 18 C -0.13 -2.45 6.43 -25.03 -0.16 -2.61 16 19 C -0.12 -1.97 6.91 -24.70 -0.17 -2.14 16 20 C -0.12 -1.94 6.83 -25.07 -0.17 -2.11 16 21 C -0.13 -2.49 6.15 -25.61 -0.16 -2.65 16 22 N -0.49 -10.93 10.27 -6.99 -0.07 -11.00 16 23 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.15 1.89 8.06 -52.48 -0.42 1.46 16 27 H 0.13 1.98 8.06 -52.48 -0.42 1.55 16 28 H 0.12 3.06 5.48 -51.93 -0.28 2.77 16 29 H 0.05 0.96 7.88 -51.93 -0.41 0.55 16 30 H 0.26 6.93 8.32 -40.82 -0.34 6.60 16 31 H 0.05 0.90 7.85 -51.93 -0.41 0.49 16 32 H 0.09 1.97 7.17 -51.93 -0.37 1.59 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.48 6.78 -51.93 -0.35 1.13 16 LS Contribution 318.77 15.07 4.80 4.80 Total: -1.00 -28.68 318.77 -9.21 -37.89 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.98 Total: 2.53 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -3.06 Total: -3.67 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: 0.06 Total: -58.18 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.68 -9.21 -37.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351642116.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.232 kcal (2) G-P(sol) polarization free energy of solvation -28.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds