Wall clock time and date at job start Mon Mar 30 2020 07:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31807 * 119.12369 * 2 1 4 4 C 1.32315 * 120.81677 * 179.97438 * 3 2 1 5 5 C 1.38613 * 119.10667 * 0.02562 * 4 3 2 6 6 C 1.38579 * 118.39748 * 0.02562 * 5 4 3 7 7 C 1.50708 * 120.44457 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.47133 * 95.00049 * 7 6 5 9 9 C 1.36936 * 120.00219 * 89.99490 * 8 7 6 10 10 H 1.07999 * 120.00493 * 217.03667 * 9 8 7 11 11 C 1.38819 * 120.00062 * 37.03444 * 9 8 7 12 12 N 1.31621 * 119.99354 * 21.42218 * 11 9 8 13 13 Si 1.86793 * 120.00173 * 201.43004 * 11 9 8 14 14 H 1.48496 * 109.47547 * 59.99976 * 13 11 9 15 15 H 1.48503 * 109.47167 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46895 * 299.99650 * 13 11 9 17 17 C 1.46496 * 120.00092 * 269.99954 * 8 7 6 18 18 C 1.54266 * 110.03438 * 241.31614 * 17 8 7 19 19 C 1.54960 * 104.16087 * 217.13670 * 18 17 8 20 20 C 1.54889 * 102.78084 * 37.88208 * 19 18 17 21 21 C 1.53876 * 110.03521 * 124.09532 * 17 8 7 22 22 N 1.31780 * 119.11960 * 179.97438 * 2 1 3 23 23 H 1.09003 * 109.46963 * 90.00095 * 1 2 3 24 24 H 1.08996 * 109.47260 * 209.99472 * 1 2 3 25 25 H 1.08994 * 109.47498 * 330.00220 * 1 2 3 26 26 H 1.08007 * 120.44845 * 180.02562 * 4 3 2 27 27 H 1.08004 * 120.80338 * 179.72322 * 5 4 3 28 28 H 1.09000 * 109.46499 * 214.99881 * 7 6 5 29 29 H 1.08993 * 109.47442 * 334.99719 * 7 6 5 30 30 H 0.97002 * 119.99347 * 174.92443 * 12 11 9 31 31 H 1.09001 * 110.01886 * 2.70053 * 17 8 7 32 32 H 1.09005 * 110.48161 * 335.77603 * 18 17 8 33 33 H 1.08999 * 110.49218 * 98.42235 * 18 17 8 34 34 H 1.09004 * 110.72046 * 279.56758 * 19 18 17 35 35 H 1.09000 * 110.92509 * 156.29080 * 19 18 17 36 36 H 1.08998 * 110.48864 * 203.40636 * 20 19 18 37 37 H 1.08999 * 110.59690 * 80.81778 * 20 19 18 38 38 H 1.09001 * 110.02865 * 238.56763 * 21 17 8 39 39 H 1.08996 * 110.03258 * 359.95059 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4710 1.1905 0.0005 5 6 4.1808 -0.0001 0.0005 6 6 3.4712 -1.1904 -0.0006 7 6 4.1961 -2.5117 -0.0012 8 7 4.3249 -2.9986 1.3744 9 6 3.3494 -3.7944 1.9133 10 1 3.0777 -3.6866 2.9530 11 6 2.7096 -4.7396 1.1232 12 7 3.2847 -5.1749 0.0222 13 14 1.0326 -5.3935 1.6224 14 1 0.0641 -4.2700 1.6928 15 1 0.5686 -6.3841 0.6181 16 1 1.1317 -6.0458 2.9527 17 6 5.4973 -2.6343 2.1737 18 6 6.2787 -3.9026 2.5745 19 6 6.7743 -3.6041 4.0120 20 6 5.5799 -2.8392 4.6344 21 6 5.0535 -1.9581 3.4827 22 7 2.1483 -1.1512 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5137 25 1 -0.3634 0.8899 0.5138 26 1 3.9906 2.1374 0.0009 27 1 5.2608 -0.0002 -0.0036 28 1 3.6330 -3.2347 -0.5914 29 1 5.1875 -2.3820 -0.4351 30 1 2.8730 -5.8878 -0.4908 31 1 6.1417 -1.9627 1.6063 32 1 5.6217 -4.7724 2.5706 33 1 7.1234 -4.0584 1.9035 34 1 7.6655 -2.9769 3.9902 35 1 6.9674 -4.5282 4.5570 36 1 5.9153 -2.2197 5.4661 37 1 4.8091 -3.5354 4.9650 38 1 5.4831 -0.9586 3.5509 39 1 3.9658 -1.9002 3.5229 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351642116.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:37 Heat of formation + Delta-G solvation = 40.866443 kcal Electronic energy + Delta-G solvation = -20261.073304 eV Core-core repulsion = 17396.202007 eV Total energy + Delta-G solvation = -2864.871297 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.79171 -39.33694 -36.40541 -34.45385 -34.14564 -32.70154 -29.54601 -29.35655 -28.72786 -27.88631 -25.00975 -23.91060 -22.52807 -21.31804 -20.79023 -18.45127 -18.28739 -17.25365 -16.67420 -16.42604 -16.09988 -15.93060 -15.89392 -15.05103 -14.69663 -14.34648 -14.10457 -14.00049 -13.46728 -13.26400 -13.11022 -12.87773 -12.71044 -12.38402 -12.28570 -11.95530 -11.89593 -11.78822 -11.72007 -11.61325 -11.35511 -11.33197 -11.13854 -10.45895 -10.17700 -9.99546 -8.48699 -7.82943 -5.36486 0.11762 0.35404 1.41843 1.47419 1.52434 2.51124 2.91732 3.19125 3.29564 3.41484 3.69005 3.87460 3.98955 4.03997 4.27200 4.30692 4.39331 4.53473 4.64030 4.68504 4.68893 4.75756 4.80454 4.93879 4.95169 4.97047 5.07081 5.13385 5.18856 5.24827 5.31777 5.50272 5.57904 5.62620 5.72042 5.73430 5.84820 6.31709 6.54152 7.19461 7.40238 7.89485 8.38465 9.16956 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.014170 B = 0.009559 C = 0.006756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.463478 B = 2928.606673 C = 4143.489956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.287 3.713 3 N -0.547 5.547 4 C 0.143 3.857 5 C -0.235 4.235 6 C 0.164 3.836 7 C 0.183 3.817 8 N -0.572 5.572 9 C -0.238 4.238 10 H 0.043 0.957 11 C -0.016 4.016 12 N -0.910 5.910 13 Si 0.939 3.061 14 H -0.287 1.287 15 H -0.293 1.293 16 H -0.279 1.279 17 C 0.163 3.837 18 C -0.127 4.127 19 C -0.111 4.111 20 C -0.114 4.114 21 C -0.127 4.127 22 N -0.536 5.536 23 H 0.094 0.906 24 H 0.070 0.930 25 H 0.098 0.902 26 H 0.203 0.797 27 H 0.164 0.836 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.251 0.749 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.042 0.958 38 H 0.066 0.934 39 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.451 10.212 2.469 11.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.019 3.981 3 N -0.263 5.263 4 C -0.022 4.022 5 C -0.258 4.258 6 C 0.016 3.984 7 C 0.055 3.945 8 N -0.291 5.291 9 C -0.368 4.368 10 H 0.061 0.939 11 C -0.214 4.214 12 N -0.554 5.554 13 Si 0.769 3.231 14 H -0.213 1.213 15 H -0.219 1.219 16 H -0.205 1.205 17 C 0.057 3.943 18 C -0.166 4.166 19 C -0.149 4.149 20 C -0.151 4.151 21 C -0.166 4.166 22 N -0.252 5.252 23 H 0.113 0.887 24 H 0.088 0.912 25 H 0.117 0.883 26 H 0.220 0.780 27 H 0.182 0.818 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.394 10.087 2.318 10.892 hybrid contribution -0.276 -0.806 0.045 0.853 sum 3.119 9.282 2.363 10.073 Atomic orbital electron populations 1.20539 0.84876 1.03865 1.04285 1.23789 0.99324 0.83809 0.91129 1.68238 1.11185 1.30018 1.16856 1.23729 0.89343 0.99556 0.89618 1.22962 1.03650 0.93679 1.05477 1.23360 0.89604 0.98649 0.86810 1.19918 0.96645 0.89041 0.88862 1.43901 1.20055 1.54210 1.10924 1.18692 1.11949 1.11204 0.94997 0.93889 1.25513 1.00948 0.97054 0.97925 1.69940 1.39030 1.27790 1.18616 0.85789 0.82716 0.77377 0.77252 1.21346 1.21881 1.20477 1.21337 0.87208 0.94231 0.91526 1.22685 0.98354 0.99198 0.96412 1.22396 0.97608 0.99904 0.94969 1.22220 0.97475 0.98132 0.97318 1.22461 0.99433 0.98603 0.96085 1.68239 1.11504 1.30755 1.14706 0.88710 0.91156 0.88348 0.78014 0.81825 0.90382 0.91988 0.93999 0.91445 0.93856 0.92736 0.89968 0.91811 0.90428 0.93958 0.91524 0.94802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.35 10.32 71.24 0.74 -1.62 16 2 C 0.29 10.96 7.64 138.75 1.06 12.02 16 3 N -0.55 -18.67 10.33 -187.84 -1.94 -20.61 16 4 C 0.14 4.13 11.30 84.71 0.96 5.09 16 5 C -0.24 -7.57 9.84 22.44 0.22 -7.35 16 6 C 0.16 6.84 6.41 42.57 0.27 7.11 16 7 C 0.18 8.38 5.61 85.64 0.48 8.86 16 8 N -0.57 -26.96 2.37 -678.32 -1.61 -28.57 16 9 C -0.24 -12.73 7.75 84.04 0.65 -12.08 16 10 H 0.04 2.40 7.00 -2.91 -0.02 2.38 16 11 C -0.02 -0.91 4.96 84.86 0.42 -0.49 16 12 N -0.91 -52.26 11.43 21.65 0.25 -52.01 16 13 Si 0.94 46.14 29.61 68.60 2.03 48.17 16 14 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 15 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 16 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 17 C 0.16 6.31 3.41 45.72 0.16 6.47 16 18 C -0.13 -4.77 6.43 31.69 0.20 -4.57 16 19 C -0.11 -3.25 6.91 31.91 0.22 -3.03 16 20 C -0.11 -3.54 6.83 31.67 0.22 -3.32 16 21 C -0.13 -4.50 6.15 31.32 0.19 -4.31 16 22 N -0.54 -24.04 10.27 -176.02 -1.81 -25.85 16 23 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 24 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.20 3.80 8.06 -2.91 -0.02 3.78 16 27 H 0.16 4.17 8.06 -2.91 -0.02 4.14 16 28 H 0.08 4.26 5.48 -2.39 -0.01 4.25 16 29 H 0.06 2.54 7.88 -2.39 -0.02 2.53 16 30 H 0.25 14.16 8.32 -92.71 -0.77 13.39 16 31 H 0.07 2.33 7.85 -2.39 -0.02 2.31 16 32 H 0.04 2.00 7.17 -2.38 -0.02 1.98 16 33 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.03 1.43 6.78 -2.39 -0.02 1.42 16 Total: -1.00 -65.13 318.77 3.73 -61.40 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 1.02 Total: 14.69 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 5.79 Total: 2.78 kcal Atomic # 7 Polarization: -121.93 SS G_CDS: -5.11 Total: -127.04 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -65.13 3.73 -61.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351642116.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.265 kcal (2) G-P(sol) polarization free energy of solvation -65.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds