Wall clock time and date at job start Mon Mar 30 2020 06:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.47205 * 109.52558 * 2 1 4 4 N 2.60802 * 109.52462 * 0.02562 * 2 1 3 5 5 C 1.53120 * 109.52342 * 120.12346 * 2 1 3 6 6 C 1.53041 * 109.28182 * 177.61945 * 5 2 1 7 7 N 1.46849 * 109.52442 * 300.82868 * 6 5 2 8 8 C 1.46901 * 110.99649 * 185.83742 * 7 6 5 9 9 C 1.53000 * 109.46769 * 169.99929 * 8 7 6 10 10 H 1.08990 * 109.47170 * 54.99770 * 9 8 7 11 11 C 1.47196 * 109.47160 * 294.99517 * 9 8 7 12 12 N 6.02633 * 123.55940 * 187.86129 * 2 1 3 13 13 C 1.53002 * 109.46776 * 174.99873 * 9 8 7 14 14 C 1.50701 * 109.46807 * 184.99822 * 13 9 8 15 15 H 1.07998 * 120.00496 * 359.97438 * 14 13 9 16 16 C 1.37879 * 119.99849 * 180.02562 * 14 13 9 17 17 N 1.31514 * 119.99832 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00049 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46764 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47029 * 119.99717 * 18 16 14 21 21 H 1.48494 * 109.47080 * 239.99687 * 18 16 14 22 22 C 1.46839 * 111.20047 * 61.73811 * 7 6 5 23 23 C 1.53034 * 109.52552 * 298.25821 * 22 7 6 24 24 H 1.08990 * 109.47113 * 299.87727 * 1 2 3 25 25 H 1.09006 * 109.46532 * 59.87337 * 1 2 3 26 26 H 1.08997 * 109.47310 * 179.87012 * 1 2 3 27 27 H 1.09005 * 109.50142 * 57.68728 * 5 2 1 28 28 H 1.08993 * 109.53791 * 297.58982 * 5 2 1 29 29 H 1.08991 * 109.46218 * 180.80508 * 6 5 2 30 30 H 1.09005 * 109.44695 * 60.83538 * 6 5 2 31 31 H 1.09002 * 109.47401 * 49.99636 * 8 7 6 32 32 H 1.09001 * 109.46874 * 289.99649 * 8 7 6 33 33 H 1.08993 * 109.47416 * 304.99509 * 13 9 8 34 34 H 1.09001 * 109.46966 * 65.00241 * 13 9 8 35 35 H 0.97010 * 119.99808 * 180.02562 * 17 16 14 36 36 H 1.09006 * 109.46266 * 58.27078 * 22 7 6 37 37 H 1.09002 * 109.46276 * 178.24270 * 22 7 6 38 38 H 1.09006 * 109.50444 * 299.24199 * 23 22 7 39 39 H 1.09002 * 109.53860 * 179.13912 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0220 1.3874 0.0000 4 7 2.4016 2.4581 0.0011 5 6 2.0417 -0.7243 1.2483 6 6 3.5709 -0.7731 1.2129 7 7 4.0116 -1.4767 0.0016 8 6 5.4686 -1.6642 0.0025 9 6 5.8619 -2.6083 -1.1355 10 1 5.4739 -2.2225 -2.0781 11 6 5.2972 -3.9439 -0.8823 12 7 4.8613 -4.9746 -0.6869 13 6 7.3868 -2.7057 -1.2132 14 6 7.7767 -3.5365 -2.4085 15 1 7.0133 -3.9538 -3.0485 16 6 9.1081 -3.7650 -2.6846 17 7 10.0378 -3.2582 -1.9045 18 14 9.5915 -4.7954 -4.1658 19 1 8.3676 -5.2471 -4.8752 20 1 10.4248 -3.9799 -5.0855 21 1 10.3663 -5.9789 -3.7139 22 6 3.5722 -0.7736 -1.2103 23 6 2.0431 -0.7248 -1.2474 24 1 -0.3633 0.5119 0.8910 25 1 -0.3632 0.5158 -0.8889 26 1 -0.3634 -1.0276 -0.0023 27 1 1.6456 -1.7396 1.2679 28 1 1.7151 -0.1891 2.1398 29 1 3.9378 -1.3008 2.0932 30 1 3.9664 0.2426 1.2072 31 1 5.7791 -2.0940 0.9549 32 1 5.9590 -0.7010 -0.1386 33 1 7.8102 -1.7062 -1.3119 34 1 7.7677 -3.1738 -0.3055 35 1 10.9745 -3.4186 -2.0989 36 1 3.9679 0.2421 -1.2046 37 1 3.9402 -1.3016 -2.0901 38 1 1.6470 -1.7401 -1.2670 39 1 1.7170 -0.1896 -2.1392 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356474955.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:19 Heat of formation + Delta-G solvation = 35.406255 kcal Electronic energy + Delta-G solvation = -19327.258820 eV Core-core repulsion = 16462.150752 eV Total energy + Delta-G solvation = -2865.108068 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.04976 -37.26045 -35.85398 -34.59498 -33.46184 -31.70213 -31.07442 -28.66095 -26.24099 -23.97179 -23.42150 -22.56786 -21.64315 -20.93480 -16.97332 -16.59248 -16.50323 -15.59372 -15.13680 -14.88585 -14.65071 -14.46853 -14.04364 -13.96734 -13.34008 -12.93217 -12.87520 -12.53793 -12.38559 -12.31475 -12.22927 -12.13034 -11.89230 -11.71378 -11.41000 -11.33264 -11.16434 -11.03657 -10.80061 -10.67019 -10.55402 -10.47510 -10.07681 -9.54638 -9.21328 -8.46984 -8.26042 -6.10458 -4.13645 2.62023 2.63393 3.27986 3.36354 3.40600 3.61430 3.72494 3.82312 3.94949 4.39586 4.40827 4.46517 4.57904 4.87264 5.00154 5.16281 5.20948 5.27879 5.29987 5.32767 5.42087 5.48594 5.53842 5.65563 5.68798 5.77738 5.82918 5.86430 5.92778 5.99949 6.06846 6.35155 6.48900 7.10003 7.12179 7.41181 7.41950 7.51701 7.84826 8.22075 8.58239 8.91395 9.52060 11.00491 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.031845 B = 0.004250 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.045032 B = 6586.443259 C = 6764.485941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.033 3.967 3 C 0.217 3.783 4 N -0.439 5.439 5 C -0.103 4.103 6 C 0.051 3.949 7 N -0.537 5.537 8 C 0.062 3.938 9 C 0.010 3.990 10 H 0.100 0.900 11 C 0.257 3.743 12 N -0.479 5.479 13 C 0.030 3.970 14 C -0.525 4.525 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.284 1.284 22 C 0.044 3.956 23 C -0.104 4.104 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.032 0.968 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.037 0.963 34 H 0.026 0.974 35 H 0.262 0.738 36 H 0.034 0.966 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.172 7.252 4.652 19.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.029 3.971 3 C -0.101 4.101 4 N -0.113 5.113 5 C -0.142 4.142 6 C -0.078 4.078 7 N -0.262 5.262 8 C -0.066 4.066 9 C -0.012 4.012 10 H 0.118 0.882 11 C -0.060 4.060 12 N -0.156 5.156 13 C -0.008 4.008 14 C -0.563 4.563 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.210 1.210 22 C -0.084 4.084 23 C -0.142 4.142 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.050 0.950 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.284 6.886 4.976 19.259 hybrid contribution 0.942 0.292 -0.900 1.335 sum -16.342 7.178 4.076 18.308 Atomic orbital electron populations 1.21857 0.91349 1.03721 1.02848 1.18489 0.96471 0.83068 0.99086 1.29170 0.93100 0.94681 0.93118 1.81216 1.08992 1.12691 1.08441 1.21724 0.95688 1.01603 0.95160 1.22116 0.94870 0.96892 0.93877 1.62000 1.13572 1.49039 1.01563 1.22234 0.85837 0.98702 0.99847 1.19244 0.99903 0.83763 0.98263 0.88230 1.28812 0.90925 0.94340 0.91887 1.80984 1.12090 1.12444 1.10097 1.19184 0.84675 0.98666 0.98315 1.21172 0.92034 1.32317 1.10824 0.92421 1.24955 0.96628 0.95732 0.96646 1.69952 1.00403 1.44821 1.37845 0.86543 0.78668 0.80174 0.82753 1.19636 1.20877 1.20959 1.22241 0.94735 0.97045 0.94411 1.21737 0.95780 1.01594 0.95130 0.91807 0.91724 0.90195 0.88726 0.90769 0.89899 0.95024 0.90016 0.92891 0.94517 0.95531 0.92851 0.94791 0.89064 0.88717 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 8.44 37.16 0.31 -0.46 16 2 C 0.03 0.26 0.72 -157.17 -0.11 0.14 16 3 C 0.22 2.37 11.60 -20.76 -0.24 2.12 16 4 N -0.44 -6.01 18.54 42.15 0.78 -5.23 16 5 C -0.10 -0.81 4.86 -26.65 -0.13 -0.94 16 6 C 0.05 0.52 5.25 -3.83 -0.02 0.50 16 7 N -0.54 -6.60 4.36 -234.67 -1.02 -7.62 16 8 C 0.06 0.90 4.32 -3.82 -0.02 0.88 16 9 C 0.01 0.18 2.14 -93.41 -0.20 -0.02 16 10 H 0.10 1.66 6.22 -51.93 -0.32 1.34 16 11 C 0.26 5.16 13.67 -20.76 -0.28 4.88 16 12 N -0.48 -10.45 18.54 42.16 0.78 -9.67 16 13 C 0.03 0.69 4.42 -27.88 -0.12 0.57 16 14 C -0.53 -13.82 8.60 -34.44 -0.30 -14.12 16 15 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -25.43 13.29 55.43 0.74 -24.70 16 18 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C 0.04 0.49 5.09 -3.84 -0.02 0.47 16 23 C -0.10 -0.88 4.86 -26.65 -0.13 -1.01 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.82 8.01 -51.93 -0.42 0.41 16 30 H 0.03 0.36 7.31 -51.93 -0.38 -0.02 16 31 H 0.08 1.18 7.99 -51.93 -0.41 0.76 16 32 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 33 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.03 0.41 7.31 -51.93 -0.38 0.03 16 37 H 0.09 1.07 6.12 -51.93 -0.32 0.75 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 325.28 15.07 4.90 4.90 Total: -1.00 -31.20 325.28 -6.19 -37.39 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: -5.99 Total: -5.83 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -1.36 Total: -5.37 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 1.28 Total: -47.22 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.20 -6.19 -37.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356474955.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.799 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds