Wall clock time and date at job start Mon Mar 30 2020 06:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.47205 * 109.52558 * 2 1 4 4 N 2.60802 * 109.52462 * 0.02562 * 2 1 3 5 5 C 1.53120 * 109.52342 * 120.12346 * 2 1 3 6 6 C 1.53041 * 109.28182 * 177.61945 * 5 2 1 7 7 N 1.46849 * 109.52442 * 300.82868 * 6 5 2 8 8 C 1.46901 * 110.99649 * 185.83742 * 7 6 5 9 9 C 1.53000 * 109.46769 * 169.99929 * 8 7 6 10 10 H 1.08990 * 109.47170 * 54.99770 * 9 8 7 11 11 C 1.47196 * 109.47160 * 294.99517 * 9 8 7 12 12 N 6.02633 * 123.55940 * 187.86129 * 2 1 3 13 13 C 1.53002 * 109.46776 * 174.99873 * 9 8 7 14 14 C 1.50701 * 109.46807 * 184.99822 * 13 9 8 15 15 H 1.07998 * 120.00496 * 359.97438 * 14 13 9 16 16 C 1.37879 * 119.99849 * 180.02562 * 14 13 9 17 17 N 1.31514 * 119.99832 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00049 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46764 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47029 * 119.99717 * 18 16 14 21 21 H 1.48494 * 109.47080 * 239.99687 * 18 16 14 22 22 C 1.46839 * 111.20047 * 61.73811 * 7 6 5 23 23 C 1.53034 * 109.52552 * 298.25821 * 22 7 6 24 24 H 1.08990 * 109.47113 * 299.87727 * 1 2 3 25 25 H 1.09006 * 109.46532 * 59.87337 * 1 2 3 26 26 H 1.08997 * 109.47310 * 179.87012 * 1 2 3 27 27 H 1.09005 * 109.50142 * 57.68728 * 5 2 1 28 28 H 1.08993 * 109.53791 * 297.58982 * 5 2 1 29 29 H 1.08991 * 109.46218 * 180.80508 * 6 5 2 30 30 H 1.09005 * 109.44695 * 60.83538 * 6 5 2 31 31 H 1.09002 * 109.47401 * 49.99636 * 8 7 6 32 32 H 1.09001 * 109.46874 * 289.99649 * 8 7 6 33 33 H 1.08993 * 109.47416 * 304.99509 * 13 9 8 34 34 H 1.09001 * 109.46966 * 65.00241 * 13 9 8 35 35 H 0.97010 * 119.99808 * 180.02562 * 17 16 14 36 36 H 1.09006 * 109.46266 * 58.27078 * 22 7 6 37 37 H 1.09002 * 109.46276 * 178.24270 * 22 7 6 38 38 H 1.09006 * 109.50444 * 299.24199 * 23 22 7 39 39 H 1.09002 * 109.53860 * 179.13912 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0220 1.3874 0.0000 4 7 2.4016 2.4581 0.0011 5 6 2.0417 -0.7243 1.2483 6 6 3.5709 -0.7731 1.2129 7 7 4.0116 -1.4767 0.0016 8 6 5.4686 -1.6642 0.0025 9 6 5.8619 -2.6083 -1.1355 10 1 5.4739 -2.2225 -2.0781 11 6 5.2972 -3.9439 -0.8823 12 7 4.8613 -4.9746 -0.6869 13 6 7.3868 -2.7057 -1.2132 14 6 7.7767 -3.5365 -2.4085 15 1 7.0133 -3.9538 -3.0485 16 6 9.1081 -3.7650 -2.6846 17 7 10.0378 -3.2582 -1.9045 18 14 9.5915 -4.7954 -4.1658 19 1 8.3676 -5.2471 -4.8752 20 1 10.4248 -3.9799 -5.0855 21 1 10.3663 -5.9789 -3.7139 22 6 3.5722 -0.7736 -1.2103 23 6 2.0431 -0.7248 -1.2474 24 1 -0.3633 0.5119 0.8910 25 1 -0.3632 0.5158 -0.8889 26 1 -0.3634 -1.0276 -0.0023 27 1 1.6456 -1.7396 1.2679 28 1 1.7151 -0.1891 2.1398 29 1 3.9378 -1.3008 2.0932 30 1 3.9664 0.2426 1.2072 31 1 5.7791 -2.0940 0.9549 32 1 5.9590 -0.7010 -0.1386 33 1 7.8102 -1.7062 -1.3119 34 1 7.7677 -3.1738 -0.3055 35 1 10.9745 -3.4186 -2.0989 36 1 3.9679 0.2421 -1.2046 37 1 3.9402 -1.3016 -2.0901 38 1 1.6470 -1.7401 -1.2670 39 1 1.7170 -0.1896 -2.1392 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356474955.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:19 Heat of formation + Delta-G solvation = 16.738652 kcal Electronic energy + Delta-G solvation = -19328.068308 eV Core-core repulsion = 16462.150752 eV Total energy + Delta-G solvation = -2865.917556 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.88080 -38.53789 -37.06269 -35.80225 -35.15314 -33.28321 -31.87162 -29.74530 -27.69902 -24.99555 -24.32848 -23.75675 -23.15352 -21.82175 -18.55604 -18.16038 -17.58069 -16.77601 -16.35267 -15.92935 -15.71324 -15.59302 -15.07586 -14.90172 -14.60412 -14.36623 -14.12541 -13.73103 -13.66951 -13.33747 -13.22900 -13.17174 -13.03124 -12.89333 -12.72597 -12.62127 -12.43753 -12.33011 -12.13321 -12.09557 -11.86881 -11.46134 -11.37219 -11.17386 -10.96710 -10.55460 -9.26382 -8.19232 -6.27618 1.39919 1.43004 1.53420 1.77884 1.80712 2.11570 2.18725 2.41988 2.83239 3.00613 3.16692 3.37169 3.73374 3.78527 3.93584 4.06857 4.32585 4.33792 4.44506 4.49578 4.58453 4.74695 4.78242 4.81646 4.83463 4.95988 4.97952 5.04449 5.10044 5.17075 5.26656 5.31799 5.40125 5.46654 5.61136 5.79439 6.04587 6.18659 6.22025 6.59259 6.84589 6.97505 7.41375 8.92032 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.031845 B = 0.004250 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.045032 B = 6586.443259 C = 6764.485941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.036 3.964 3 C 0.239 3.761 4 N -0.494 5.494 5 C -0.098 4.098 6 C 0.048 3.952 7 N -0.539 5.539 8 C 0.071 3.929 9 C 0.023 3.977 10 H 0.116 0.884 11 C 0.268 3.732 12 N -0.507 5.507 13 C 0.036 3.964 14 C -0.536 4.536 15 H 0.057 0.943 16 C 0.011 3.989 17 N -0.925 5.925 18 Si 0.949 3.051 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.285 1.285 22 C 0.039 3.961 23 C -0.099 4.099 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.019 0.981 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.029 0.971 34 H 0.002 0.998 35 H 0.263 0.737 36 H 0.021 0.979 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.133 6.897 4.340 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.032 3.968 3 C -0.078 4.078 4 N -0.170 5.170 5 C -0.136 4.136 6 C -0.080 4.080 7 N -0.263 5.263 8 C -0.058 4.058 9 C 0.001 3.999 10 H 0.133 0.867 11 C -0.048 4.048 12 N -0.185 5.185 13 C -0.003 4.003 14 C -0.574 4.574 15 H 0.075 0.925 16 C -0.188 4.188 17 N -0.566 5.566 18 Si 0.775 3.225 19 H -0.191 1.191 20 H -0.200 1.200 21 H -0.211 1.211 22 C -0.089 4.089 23 C -0.138 4.138 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.117 0.883 27 H 0.126 0.874 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.037 0.963 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.021 0.979 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.103 0.897 38 H 0.125 0.875 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.265 6.536 4.662 20.871 hybrid contribution 1.560 0.400 -0.785 1.792 sum -17.705 6.936 3.877 19.406 Atomic orbital electron populations 1.21876 0.88914 1.05164 1.03425 1.18702 0.98196 0.81025 0.98874 1.29777 0.91595 0.94960 0.91468 1.81234 1.10898 1.14609 1.10257 1.21749 0.93488 1.02610 0.95803 1.22215 0.96851 0.95909 0.93037 1.62005 1.11681 1.49824 1.02819 1.22037 0.87797 0.97765 0.98216 1.19120 0.96467 0.83693 1.00618 0.86660 1.29125 0.90307 0.94399 0.90965 1.80985 1.13036 1.13156 1.11276 1.19004 0.88040 0.97280 0.95988 1.21580 0.92089 1.32170 1.11595 0.92519 1.25730 0.96918 0.96969 0.99205 1.70050 1.00702 1.46285 1.39514 0.85631 0.78423 0.78610 0.79853 1.19064 1.20030 1.21106 1.22321 0.96872 0.96010 0.93662 1.21750 0.93481 1.02573 0.95996 0.91156 0.91367 0.88292 0.87374 0.89108 0.89502 0.96283 0.90086 0.92652 0.95290 0.97942 0.92771 0.96053 0.89678 0.87504 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.44 71.98 0.61 -0.43 16 2 C 0.04 0.47 0.72 -53.91 -0.04 0.43 16 3 C 0.24 4.87 11.60 89.44 1.04 5.90 16 4 N -0.49 -13.36 18.54 20.01 0.37 -12.99 16 5 C -0.10 -1.26 4.86 30.65 0.15 -1.11 16 6 C 0.05 0.91 5.25 86.33 0.45 1.36 16 7 N -0.54 -12.44 4.36 -896.36 -3.91 -16.35 16 8 C 0.07 2.00 4.32 86.30 0.37 2.37 16 9 C 0.02 0.80 2.14 -12.60 -0.03 0.77 16 10 H 0.12 3.73 6.22 -2.39 -0.01 3.71 16 11 C 0.27 10.55 13.67 89.44 1.22 11.78 16 12 N -0.51 -21.67 18.54 20.01 0.37 -21.30 16 13 C 0.04 1.65 4.42 29.85 0.13 1.78 16 14 C -0.54 -28.21 8.60 25.60 0.22 -27.99 16 15 H 0.06 2.93 7.59 -2.91 -0.02 2.91 16 16 C 0.01 0.58 5.46 84.66 0.46 1.04 16 17 N -0.93 -53.33 13.29 21.45 0.28 -53.04 16 18 Si 0.95 43.22 29.54 68.60 2.03 45.25 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 C 0.04 0.82 5.09 86.33 0.44 1.26 16 23 C -0.10 -1.42 4.86 30.65 0.15 -1.28 16 24 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 26 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.09 1.58 8.01 -2.39 -0.02 1.56 16 30 H 0.02 0.41 7.31 -2.38 -0.02 0.40 16 31 H 0.08 2.29 7.99 -2.39 -0.02 2.27 16 32 H 0.06 1.54 8.12 -2.39 -0.02 1.52 16 33 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 36 H 0.02 0.50 7.31 -2.38 -0.02 0.48 16 37 H 0.08 1.87 6.12 -2.39 -0.01 1.85 16 38 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -67.02 325.28 5.36 -61.67 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: 1.03 Total: 0.88 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 5.18 Total: -4.11 kcal Atomic # 7 Polarization: -100.80 SS G_CDS: -2.88 Total: -103.68 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -67.02 5.36 -61.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356474955.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.404 kcal (2) G-P(sol) polarization free energy of solvation -67.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds