Wall clock time and date at job start Mon Mar 30 2020 06:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00131 * 2 1 4 4 H 1.48494 * 109.47076 * 239.99739 * 3 2 1 5 5 H 1.48506 * 109.46895 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47184 * 119.99364 * 3 2 1 7 7 C 1.37877 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00029 * 173.42386 * 7 2 1 9 9 C 1.50695 * 120.00108 * 353.43114 * 7 2 1 10 10 C 1.53004 * 115.54960 * 84.72330 * 9 7 2 11 11 N 1.46893 * 109.47640 * 65.23800 * 10 9 7 12 12 C 1.46898 * 111.00369 * 176.05112 * 11 10 9 13 13 H 1.08997 * 109.71475 * 324.39015 * 12 11 10 14 14 C 1.53382 * 109.75681 * 203.75937 * 12 11 10 15 15 C 1.53028 * 109.71973 * 189.74756 * 14 12 11 16 16 C 1.53368 * 109.75127 * 71.71965 * 15 14 12 17 17 C 1.50943 * 108.20873 * 309.36180 * 16 15 14 18 18 N 1.30138 * 128.28587 * 197.08863 * 17 16 15 19 19 N 1.40314 * 108.12310 * 179.97438 * 18 17 16 20 20 H 0.96989 * 126.00588 * 179.88375 * 19 18 17 21 21 C 1.35200 * 107.98937 * 359.61488 * 19 18 17 22 22 C 1.34567 * 107.62210 * 0.25406 * 21 19 18 23 23 C 1.52999 * 117.50050 * 230.38800 * 9 7 2 24 24 C 1.53003 * 117.49964 * 299.04963 * 9 7 2 25 25 H 0.97006 * 120.00107 * 5.03253 * 1 2 3 26 26 H 1.09006 * 109.47027 * 305.23354 * 10 9 7 27 27 H 1.09004 * 109.46927 * 185.24499 * 10 9 7 28 28 H 1.00901 * 110.99669 * 300.00813 * 11 10 9 29 29 H 1.09004 * 109.42966 * 309.81980 * 14 12 11 30 30 H 1.08999 * 109.43081 * 69.71924 * 14 12 11 31 31 H 1.09004 * 109.42501 * 191.80986 * 15 14 12 32 32 H 1.09003 * 109.42204 * 311.68932 * 15 14 12 33 33 H 1.09004 * 109.71402 * 69.03773 * 16 15 14 34 34 H 1.09000 * 109.71977 * 189.67849 * 16 15 14 35 35 H 1.08005 * 126.18820 * 180.22641 * 21 19 18 36 36 H 1.08995 * 117.50390 * 215.00236 * 23 9 7 37 37 H 1.09003 * 117.49754 * 0.03161 * 23 9 7 38 38 H 1.08998 * 117.49580 * 359.97438 * 24 9 7 39 39 H 1.09003 * 117.49897 * 144.99710 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0792 -1.1972 -0.1066 9 6 1.2584 -2.4948 0.1504 10 6 0.6860 -3.0799 -1.1422 11 7 1.7867 -3.4532 -2.0405 12 6 1.2777 -4.1053 -3.2543 13 1 0.4090 -4.7155 -3.0072 14 6 2.3726 -4.9877 -3.8669 15 6 1.9316 -5.4723 -5.2498 16 6 1.9650 -4.3044 -6.2433 17 6 1.2085 -3.1476 -5.6368 18 7 0.7341 -2.0928 -6.2336 19 7 0.1067 -1.2904 -5.2685 20 1 -0.3329 -0.4414 -5.4313 21 6 0.2176 -1.9117 -4.0728 22 6 0.8929 -3.0586 -4.2707 23 6 1.7592 -3.4784 1.2100 24 6 0.4574 -2.7056 1.4368 25 1 -0.4850 0.8368 -0.0737 26 1 0.0555 -2.3362 -1.6297 27 1 0.0916 -3.9634 -0.9091 28 1 2.3529 -2.6505 -2.2715 29 1 3.2926 -4.4108 -3.9612 30 1 2.5486 -5.8479 -3.2211 31 1 2.6062 -6.2578 -5.5908 32 1 0.9173 -5.8668 -5.1892 33 1 2.9978 -4.0105 -6.4307 34 1 1.4917 -4.6035 -7.1785 35 1 -0.1661 -1.5522 -3.1294 36 1 1.6807 -4.5422 0.9863 37 1 2.6279 -3.1844 1.7990 38 1 0.4704 -1.9036 2.1749 39 1 -0.4775 -3.2611 1.3623 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367613967.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:33 Heat of formation + Delta-G solvation = 87.589163 kcal Electronic energy + Delta-G solvation = -20065.055413 eV Core-core repulsion = 17202.210166 eV Total energy + Delta-G solvation = -2862.845247 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.16905 -37.26196 -36.22137 -33.85538 -31.94092 -30.72332 -29.37253 -28.09331 -25.64515 -24.55638 -22.69929 -21.40623 -20.97322 -20.30536 -19.09248 -18.46532 -17.47255 -15.93811 -15.07941 -14.97736 -14.64106 -14.19617 -13.92990 -13.87266 -13.68858 -12.87811 -12.75891 -12.49734 -12.20969 -11.70995 -11.55915 -11.29563 -10.98525 -10.97875 -10.88825 -10.74372 -10.49463 -10.45003 -10.15804 -9.99198 -9.36795 -9.09926 -8.76546 -8.45443 -8.31826 -8.00321 -7.36569 -6.06196 -4.11311 2.23774 3.04321 3.15555 3.26196 3.31035 3.35475 4.36605 4.68878 4.87196 5.01346 5.22692 5.29678 5.34039 5.52898 5.60659 5.67434 5.80117 5.83895 5.91686 5.99968 6.07785 6.19970 6.23061 6.39464 6.51003 6.57110 6.60816 6.63784 6.86390 6.88813 6.95369 6.97019 7.18578 7.53500 7.57397 7.59876 7.85188 7.96826 8.07188 8.36622 8.49103 8.92009 9.54049 11.01336 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019345 B = 0.007073 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.082937 B = 3957.953134 C = 4835.314074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.071 3.929 3 Si 0.884 3.116 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.489 4.489 8 H 0.059 0.941 9 C 0.050 3.950 10 C 0.104 3.896 11 N -0.671 5.671 12 C 0.164 3.836 13 H 0.073 0.927 14 C -0.104 4.104 15 C -0.114 4.114 16 C -0.036 4.036 17 C 0.082 3.918 18 N -0.304 5.304 19 N -0.487 5.487 20 H 0.436 0.564 21 C 0.077 3.923 22 C -0.265 4.265 23 C -0.200 4.200 24 C -0.163 4.163 25 H 0.258 0.742 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.349 0.651 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.185 0.815 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.536 -7.230 -9.101 11.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.131 4.131 3 Si 0.712 3.288 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.527 4.527 8 H 0.077 0.923 9 C 0.049 3.951 10 C -0.025 4.025 11 N -0.301 5.301 12 C 0.052 3.948 13 H 0.091 0.909 14 C -0.142 4.142 15 C -0.152 4.152 16 C -0.075 4.075 17 C -0.087 4.087 18 N -0.127 5.127 19 N -0.195 5.195 20 H 0.279 0.721 21 C -0.069 4.069 22 C -0.278 4.278 23 C -0.237 4.237 24 C -0.202 4.202 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.169 0.831 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.202 0.798 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.372 -7.076 -9.775 12.073 hybrid contribution -0.275 2.072 0.335 2.116 sum 0.096 -5.005 -9.440 10.685 Atomic orbital electron populations 1.69985 1.05727 1.26535 1.49690 1.24961 0.94756 0.98603 0.94788 0.86798 0.79766 0.83495 0.78770 1.20386 1.21474 1.20174 1.20452 0.93062 0.88873 1.50344 0.92296 1.18740 0.97321 0.93254 0.85749 1.21541 0.91226 0.95937 0.93753 1.60578 1.22356 1.34157 1.12987 1.20017 0.95916 0.92047 0.86783 0.90932 1.21515 0.98685 0.99363 0.94627 1.21565 1.01896 0.96603 0.95180 1.20089 0.98835 0.90610 0.97972 1.22319 0.98322 0.95003 0.93061 1.76869 1.16353 1.05033 1.14403 1.46356 1.47329 1.20571 1.05252 0.72087 1.22638 0.99165 0.93990 0.91125 1.21081 1.10254 1.00621 0.95888 1.22868 0.97574 0.95933 1.07358 1.22538 0.92483 1.01390 1.03746 0.93178 0.94624 0.94468 0.83143 0.91687 0.91277 0.91294 0.91794 0.90146 0.90607 0.79792 0.91589 0.90983 0.90424 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.50 12.95 55.43 0.72 -22.78 16 2 C 0.07 1.86 5.39 -17.82 -0.10 1.76 16 3 Si 0.88 20.52 29.55 -169.99 -5.02 15.50 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.49 -12.65 8.30 -34.44 -0.29 -12.94 16 8 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 9 C 0.05 1.18 1.56 -155.66 -0.24 0.94 16 10 C 0.10 2.19 5.27 -3.83 -0.02 2.17 16 11 N -0.67 -12.64 6.18 -107.65 -0.67 -13.31 16 12 C 0.16 2.64 2.83 -68.58 -0.19 2.44 16 13 H 0.07 1.18 7.76 -51.93 -0.40 0.77 16 14 C -0.10 -1.39 5.49 -26.52 -0.15 -1.53 16 15 C -0.11 -1.26 5.86 -26.53 -0.16 -1.41 16 16 C -0.04 -0.43 6.31 -27.57 -0.17 -0.61 16 17 C 0.08 1.30 7.10 -82.34 -0.58 0.72 16 18 N -0.30 -5.10 12.68 33.75 0.43 -4.67 16 19 N -0.49 -7.64 7.37 30.35 0.22 -7.42 16 20 H 0.44 5.53 8.96 -182.45 -1.64 3.89 16 21 C 0.08 1.31 11.26 -17.37 -0.20 1.12 16 22 C -0.27 -4.43 5.32 -104.98 -0.56 -4.99 16 23 C -0.20 -4.38 9.96 -26.69 -0.27 -4.64 16 24 C -0.16 -3.79 9.46 -26.69 -0.25 -4.04 16 25 H 0.26 6.68 8.32 -40.82 -0.34 6.34 16 26 H 0.04 0.80 5.38 -51.93 -0.28 0.52 16 27 H 0.04 0.76 7.92 -51.93 -0.41 0.35 16 28 H 0.35 7.17 8.02 -39.29 -0.31 6.86 16 29 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.19 3.37 5.81 -52.48 -0.30 3.07 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 38 H 0.08 1.93 8.14 -51.93 -0.42 1.51 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 315.49 15.07 4.75 4.75 Total: -1.00 -27.79 315.49 -9.85 -37.64 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -7.12 Total: 11.30 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -3.17 Total: -21.01 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.70 Total: -48.18 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.79 -9.85 -37.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367613967.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.233 kcal (2) G-P(sol) polarization free energy of solvation -27.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds