Wall clock time and date at job start Mon Mar 30 2020 06:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 111.00150 * 2 1 4 4 H 1.08994 * 109.47341 * 34.99461 * 3 2 1 5 5 C 1.53002 * 109.46965 * 274.99602 * 3 2 1 6 6 C 1.50706 * 109.47282 * 155.00077 * 3 2 1 7 7 C 1.50692 * 120.00124 * 54.14119 * 6 3 2 8 8 C 1.32663 * 119.99521 * 234.14596 * 6 3 2 9 9 C 1.47679 * 120.00313 * 352.08363 * 8 6 3 10 10 C 1.39501 * 120.18517 * 315.70020 * 9 8 6 11 11 C 1.37948 * 119.92566 * 180.02562 * 10 9 8 12 12 C 1.38473 * 120.29514 * 359.97438 * 11 10 9 13 13 C 1.38115 * 120.37365 * 0.02562 * 12 11 10 14 14 C 1.38735 * 120.06645 * 359.72274 * 13 12 11 15 15 O 1.35643 * 120.15125 * 180.27767 * 14 13 12 16 16 C 1.34808 * 116.99974 * 5.51989 * 15 14 13 17 17 H 1.08003 * 119.99701 * 354.93429 * 16 15 14 18 18 C 1.38645 * 120.00239 * 174.93734 * 16 15 14 19 19 N 1.31552 * 120.00025 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99894 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47230 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46680 * 120.00191 * 20 18 16 23 23 H 1.48494 * 109.47364 * 239.99834 * 20 18 16 24 24 H 1.08998 * 109.46832 * 300.00648 * 1 2 3 25 25 H 1.08998 * 109.46540 * 60.00213 * 1 2 3 26 26 H 1.08994 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.00904 * 110.99958 * 123.95030 * 2 1 3 28 28 H 1.09003 * 109.47191 * 300.00057 * 5 3 2 29 29 H 1.09003 * 109.46699 * 59.99700 * 5 3 2 30 30 H 1.08992 * 109.46997 * 179.97438 * 5 3 2 31 31 H 1.09004 * 109.47554 * 270.00354 * 7 6 3 32 32 H 1.09007 * 109.47252 * 30.00281 * 7 6 3 33 33 H 1.08997 * 109.46968 * 150.00042 * 7 6 3 34 34 H 1.08003 * 120.00041 * 172.35818 * 8 6 3 35 35 H 1.07998 * 120.03327 * 359.96991 * 10 9 8 36 36 H 1.07997 * 119.85106 * 179.97438 * 11 10 9 37 37 H 1.08003 * 119.81613 * 179.97438 * 12 11 10 38 38 H 1.08000 * 119.97017 * 179.97438 * 13 12 11 39 39 H 0.97002 * 119.99995 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3398 2.0123 0.5893 5 6 2.0610 1.8925 -1.4371 6 6 3.3778 1.3789 0.6005 7 6 4.4434 0.4668 0.0498 8 6 3.6562 2.1885 1.6139 9 6 2.6719 3.2035 2.0402 10 6 2.0024 3.9741 1.0894 11 6 1.0844 4.9211 1.4937 12 6 0.8232 5.1107 2.8403 13 6 1.4790 4.3546 3.7920 14 6 2.4014 3.3943 3.4023 15 8 3.0423 2.6469 4.3353 16 6 2.6561 2.8052 5.6172 17 1 1.9273 3.5604 5.8722 18 6 3.1944 1.9986 6.6081 19 7 4.0817 1.0784 6.2973 20 14 2.6596 2.2185 8.3844 21 1 1.6585 3.3120 8.4682 22 1 2.0552 0.9555 8.8792 23 1 3.8397 2.5622 9.2177 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8306 -0.5261 0.7814 28 1 2.7167 1.2516 -2.0265 29 1 1.0612 1.8870 -1.8714 30 1 2.4512 2.9102 -1.4370 31 1 4.4164 -0.4852 0.5799 32 1 4.2633 0.2969 -1.0118 33 1 5.4215 0.9291 0.1828 34 1 4.6046 2.1082 2.1243 35 1 2.2032 3.8299 0.0381 36 1 0.5670 5.5172 0.7566 37 1 0.1033 5.8546 3.1481 38 1 1.2707 4.5082 4.8405 39 1 4.4580 0.5138 6.9905 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379688513.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:39 Heat of formation + Delta-G solvation = 9.761422 kcal Electronic energy + Delta-G solvation = -19752.083056 eV Core-core repulsion = 16853.570193 eV Total energy + Delta-G solvation = -2898.512863 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.35473 -37.67636 -36.18217 -33.71238 -32.35221 -30.45694 -29.73381 -28.76027 -26.15823 -25.34341 -25.17112 -22.36568 -21.17500 -20.88572 -18.03225 -17.98986 -16.92780 -15.53137 -15.31305 -14.65849 -14.54041 -14.13717 -14.02996 -13.83661 -13.52995 -13.09276 -12.98669 -12.64958 -12.46038 -12.17195 -11.94619 -11.77932 -11.71846 -11.41720 -11.34416 -11.03525 -10.93056 -10.75143 -10.65314 -10.44998 -10.12422 -9.37825 -8.93917 -8.78789 -8.25007 -7.72186 -7.08505 -6.50852 -4.08865 1.80775 2.33093 2.93230 3.08652 3.10156 3.15479 3.91498 4.52325 4.60203 5.03504 5.11075 5.19831 5.40063 5.51153 5.56350 5.62324 5.68041 5.74926 5.81206 5.91239 5.97318 6.01224 6.07761 6.11956 6.18232 6.21095 6.28883 6.37948 6.56761 6.67789 6.83860 6.98433 7.02668 7.14061 7.30873 7.33881 7.34897 7.49170 7.67258 7.78785 7.94038 8.94762 9.64386 10.66616 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019031 B = 0.006265 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.915671 B = 4468.463878 C = 5103.264092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.688 5.688 3 C 0.114 3.886 4 H 0.067 0.933 5 C -0.136 4.136 6 C -0.162 4.162 7 C -0.099 4.099 8 C -0.061 4.061 9 C -0.143 4.143 10 C -0.066 4.066 11 C -0.218 4.218 12 C -0.071 4.071 13 C -0.236 4.236 14 C 0.163 3.837 15 O -0.167 6.167 16 C -0.394 4.394 17 H 0.092 0.908 18 C 0.041 3.959 19 N -0.858 5.858 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.275 1.275 24 H 0.022 0.978 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.344 0.656 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.127 0.873 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.200 1.315 -9.766 10.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.319 5.319 3 C 0.005 3.995 4 H 0.085 0.915 5 C -0.193 4.193 6 C -0.163 4.163 7 C -0.155 4.155 8 C -0.080 4.080 9 C -0.144 4.144 10 C -0.084 4.084 11 C -0.237 4.237 12 C -0.090 4.090 13 C -0.255 4.255 14 C 0.108 3.892 15 O -0.070 6.070 16 C -0.470 4.470 17 H 0.110 0.890 18 C -0.164 4.164 19 N -0.492 5.492 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 H 0.041 0.959 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.162 0.838 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.145 0.855 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.834 0.885 -10.334 11.058 hybrid contribution -0.558 0.473 1.998 2.128 sum -4.392 1.358 -8.336 9.520 Atomic orbital electron populations 1.22198 0.88530 1.01239 1.00246 1.60527 1.07091 1.14376 1.49926 1.20739 0.93223 0.89482 0.96028 0.91546 1.21828 1.01222 1.00115 0.96172 1.21758 0.95525 1.00152 0.98857 1.20564 0.96095 0.98424 1.00441 1.21388 0.98361 0.93946 0.94284 1.18134 1.03655 1.02527 0.90114 1.21014 0.95009 0.94489 0.97901 1.20527 1.04251 1.03462 0.95451 1.20811 0.97650 0.97528 0.92967 1.21133 1.03021 1.01124 1.00233 1.19458 0.90418 0.90211 0.89088 1.83938 1.52369 1.54967 1.15719 1.21392 1.25838 1.19833 0.79952 0.89047 1.25278 0.96078 0.95070 0.99928 1.70044 1.26203 1.18900 1.34074 0.85661 0.78675 0.78613 0.80584 1.19103 1.20100 1.20065 0.95909 0.92119 0.91907 0.83830 0.92191 0.93276 0.92552 0.92142 0.92041 0.92613 0.86506 0.86352 0.87596 0.87554 0.85507 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.50 60.07 0.63 1.00 16 2 N -0.69 -10.22 6.48 -115.25 -0.75 -10.97 16 3 C 0.11 1.78 1.92 -68.86 -0.13 1.65 16 4 H 0.07 1.18 4.69 -51.93 -0.24 0.94 16 5 C -0.14 -1.81 8.93 37.16 0.33 -1.48 16 6 C -0.16 -2.74 4.63 -101.24 -0.47 -3.21 16 7 C -0.10 -1.43 9.80 36.00 0.35 -1.08 16 8 C -0.06 -1.21 8.90 -37.62 -0.33 -1.55 16 9 C -0.14 -3.01 4.96 -104.84 -0.52 -3.53 16 10 C -0.07 -1.20 7.40 -39.22 -0.29 -1.49 16 11 C -0.22 -3.80 10.03 -39.60 -0.40 -4.19 16 12 C -0.07 -1.32 10.03 -39.54 -0.40 -1.71 16 13 C -0.24 -5.14 9.16 -39.44 -0.36 -5.50 16 14 C 0.16 3.92 6.66 -38.67 -0.26 3.66 16 15 O -0.17 -4.67 9.21 0.44 0.00 -4.67 16 16 C -0.39 -10.86 9.49 30.88 0.29 -10.56 16 17 H 0.09 2.35 5.21 -52.48 -0.27 2.08 16 18 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 19 N -0.86 -24.68 13.67 55.48 0.76 -23.92 16 20 Si 0.94 20.29 29.55 -169.99 -5.02 15.27 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 24 H 0.02 0.33 8.05 -51.93 -0.42 -0.09 16 25 H 0.06 0.74 7.44 -51.93 -0.39 0.36 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.34 5.35 8.43 -39.29 -0.33 5.02 16 28 H 0.06 0.77 7.06 -51.93 -0.37 0.41 16 29 H 0.05 0.61 7.45 -51.93 -0.39 0.22 16 30 H 0.06 0.72 6.27 -51.93 -0.33 0.39 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.81 6.96 -51.93 -0.36 0.45 16 33 H 0.05 0.77 8.07 -51.93 -0.42 0.35 16 34 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 35 H 0.12 1.88 4.86 -52.49 -0.26 1.63 16 36 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 38 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 39 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 317.01 15.07 4.78 4.78 Total: -1.00 -29.15 317.01 -7.19 -36.34 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -5.31 Total: 10.15 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: -1.65 Total: -26.98 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.01 Total: -34.89 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: 0.00 Total: -4.67 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.15 -7.19 -36.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379688513.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.098 kcal (2) G-P(sol) polarization free energy of solvation -29.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds