Wall clock time and date at job start Mon Mar 30 2020 06:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 111.00150 * 2 1 4 4 H 1.08994 * 109.47341 * 34.99461 * 3 2 1 5 5 C 1.53002 * 109.46965 * 274.99602 * 3 2 1 6 6 C 1.50706 * 109.47282 * 155.00077 * 3 2 1 7 7 C 1.50692 * 120.00124 * 54.14119 * 6 3 2 8 8 C 1.32663 * 119.99521 * 234.14596 * 6 3 2 9 9 C 1.47679 * 120.00313 * 352.08363 * 8 6 3 10 10 C 1.39501 * 120.18517 * 315.70020 * 9 8 6 11 11 C 1.37948 * 119.92566 * 180.02562 * 10 9 8 12 12 C 1.38473 * 120.29514 * 359.97438 * 11 10 9 13 13 C 1.38115 * 120.37365 * 0.02562 * 12 11 10 14 14 C 1.38735 * 120.06645 * 359.72274 * 13 12 11 15 15 O 1.35643 * 120.15125 * 180.27767 * 14 13 12 16 16 C 1.34808 * 116.99974 * 5.51989 * 15 14 13 17 17 H 1.08003 * 119.99701 * 354.93429 * 16 15 14 18 18 C 1.38645 * 120.00239 * 174.93734 * 16 15 14 19 19 N 1.31552 * 120.00025 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99894 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47230 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46680 * 120.00191 * 20 18 16 23 23 H 1.48494 * 109.47364 * 239.99834 * 20 18 16 24 24 H 1.08998 * 109.46832 * 300.00648 * 1 2 3 25 25 H 1.08998 * 109.46540 * 60.00213 * 1 2 3 26 26 H 1.08994 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.00904 * 110.99958 * 123.95030 * 2 1 3 28 28 H 1.09003 * 109.47191 * 300.00057 * 5 3 2 29 29 H 1.09003 * 109.46699 * 59.99700 * 5 3 2 30 30 H 1.08992 * 109.46997 * 179.97438 * 5 3 2 31 31 H 1.09004 * 109.47554 * 270.00354 * 7 6 3 32 32 H 1.09007 * 109.47252 * 30.00281 * 7 6 3 33 33 H 1.08997 * 109.46968 * 150.00042 * 7 6 3 34 34 H 1.08003 * 120.00041 * 172.35818 * 8 6 3 35 35 H 1.07998 * 120.03327 * 359.96991 * 10 9 8 36 36 H 1.07997 * 119.85106 * 179.97438 * 11 10 9 37 37 H 1.08003 * 119.81613 * 179.97438 * 12 11 10 38 38 H 1.08000 * 119.97017 * 179.97438 * 13 12 11 39 39 H 0.97002 * 119.99995 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3398 2.0123 0.5893 5 6 2.0610 1.8925 -1.4371 6 6 3.3778 1.3789 0.6005 7 6 4.4434 0.4668 0.0498 8 6 3.6562 2.1885 1.6139 9 6 2.6719 3.2035 2.0402 10 6 2.0024 3.9741 1.0894 11 6 1.0844 4.9211 1.4937 12 6 0.8232 5.1107 2.8403 13 6 1.4790 4.3546 3.7920 14 6 2.4014 3.3943 3.4023 15 8 3.0423 2.6469 4.3353 16 6 2.6561 2.8052 5.6172 17 1 1.9273 3.5604 5.8722 18 6 3.1944 1.9986 6.6081 19 7 4.0817 1.0784 6.2973 20 14 2.6596 2.2185 8.3844 21 1 1.6585 3.3120 8.4682 22 1 2.0552 0.9555 8.8792 23 1 3.8397 2.5622 9.2177 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8306 -0.5261 0.7814 28 1 2.7167 1.2516 -2.0265 29 1 1.0612 1.8870 -1.8714 30 1 2.4512 2.9102 -1.4370 31 1 4.4164 -0.4852 0.5799 32 1 4.2633 0.2969 -1.0118 33 1 5.4215 0.9291 0.1828 34 1 4.6046 2.1082 2.1243 35 1 2.2032 3.8299 0.0381 36 1 0.5670 5.5172 0.7566 37 1 0.1033 5.8546 3.1481 38 1 1.2707 4.5082 4.8405 39 1 4.4580 0.5138 6.9905 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379688513.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:39 Heat of formation + Delta-G solvation = -8.466601 kcal Electronic energy + Delta-G solvation = -19752.873482 eV Core-core repulsion = 16853.570193 eV Total energy + Delta-G solvation = -2899.303289 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.99131 -39.17036 -37.77017 -35.05044 -34.31233 -31.91902 -31.06894 -30.23229 -27.73740 -27.11255 -26.33843 -23.83636 -22.75593 -22.31572 -19.85644 -19.44480 -18.58474 -17.01348 -16.73453 -16.27117 -16.17842 -15.70154 -15.45788 -15.32320 -15.14028 -14.48637 -14.32692 -14.19861 -13.77172 -13.59339 -13.37328 -13.12260 -13.06005 -12.98830 -12.62343 -12.50030 -12.27462 -12.23757 -12.15029 -12.05408 -11.54011 -11.11823 -10.84117 -10.32395 -9.55848 -9.21228 -8.73351 -8.49309 -6.16096 0.27113 0.71376 1.32298 1.40033 1.43121 1.50053 2.14567 2.82690 3.16378 3.37589 3.47862 3.79456 3.99324 4.11843 4.24193 4.32957 4.43521 4.52240 4.58176 4.59543 4.67131 4.76511 4.84926 4.87764 4.92164 4.96323 5.07107 5.08297 5.09723 5.16109 5.29364 5.42817 5.55665 5.62618 5.73600 5.79038 5.87330 6.01473 6.15834 6.22647 6.38106 6.95421 7.77186 8.73384 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019031 B = 0.006265 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.915671 B = 4468.463878 C = 5103.264092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.686 5.686 3 C 0.113 3.887 4 H 0.046 0.954 5 C -0.131 4.131 6 C -0.129 4.129 7 C -0.100 4.100 8 C -0.107 4.107 9 C -0.144 4.144 10 C -0.065 4.065 11 C -0.194 4.194 12 C -0.072 4.072 13 C -0.251 4.251 14 C 0.118 3.882 15 O -0.219 6.219 16 C -0.416 4.416 17 H 0.098 0.902 18 C -0.019 4.019 19 N -0.915 5.915 20 Si 1.016 2.984 21 H -0.253 1.253 22 H -0.268 1.268 23 H -0.268 1.268 24 H 0.005 0.995 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.336 0.664 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.144 0.856 38 H 0.117 0.883 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.183 2.395 -12.112 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.316 5.316 3 C 0.004 3.996 4 H 0.064 0.936 5 C -0.188 4.188 6 C -0.129 4.129 7 C -0.156 4.156 8 C -0.126 4.126 9 C -0.145 4.145 10 C -0.083 4.083 11 C -0.212 4.212 12 C -0.090 4.090 13 C -0.270 4.270 14 C 0.067 3.933 15 O -0.124 6.124 16 C -0.492 4.492 17 H 0.116 0.884 18 C -0.217 4.217 19 N -0.553 5.553 20 Si 0.835 3.165 21 H -0.177 1.177 22 H -0.193 1.193 23 H -0.193 1.193 24 H 0.023 0.977 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.153 0.847 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.164 0.836 36 H 0.169 0.831 37 H 0.161 0.839 38 H 0.135 0.865 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.847 2.004 -12.733 14.154 hybrid contribution -0.042 0.208 2.376 2.385 sum -5.888 2.212 -10.357 12.118 Atomic orbital electron populations 1.22275 0.87317 1.02436 1.00124 1.60633 1.08168 1.13467 1.49306 1.20780 0.91570 0.89848 0.97417 0.93586 1.21795 1.02505 1.00503 0.93994 1.22132 0.96734 0.97668 0.96365 1.20649 0.95551 0.97790 1.01648 1.21241 0.97955 0.96842 0.96557 1.18507 1.03588 1.02833 0.89597 1.21374 0.94545 0.93736 0.98639 1.21112 1.02342 1.01906 0.95879 1.21216 0.97514 0.97365 0.92901 1.21274 1.03386 1.01562 1.00773 1.20071 0.91973 0.91280 0.89930 1.83913 1.54835 1.57461 1.16235 1.21842 1.26282 1.20373 0.80689 0.88426 1.26518 0.95983 0.94528 1.04680 1.70187 1.28567 1.20815 1.35692 0.84572 0.78641 0.79047 0.74228 1.17651 1.19340 1.19256 0.97658 0.90501 0.90188 0.84715 0.91332 0.91765 0.91773 0.92046 0.89679 0.92182 0.89304 0.83601 0.83054 0.83853 0.86545 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.50 127.69 1.34 2.02 16 2 N -0.69 -19.13 6.48 -518.53 -3.36 -22.49 16 3 C 0.11 3.31 1.92 44.17 0.08 3.39 16 4 H 0.05 1.56 4.69 -2.39 -0.01 1.55 16 5 C -0.13 -2.98 8.93 71.98 0.64 -2.33 16 6 C -0.13 -4.29 4.63 -17.62 -0.08 -4.37 16 7 C -0.10 -2.79 9.80 71.23 0.70 -2.10 16 8 C -0.11 -4.44 8.90 23.60 0.21 -4.23 16 9 C -0.14 -6.21 4.96 -20.01 -0.10 -6.30 16 10 C -0.07 -2.23 7.40 22.51 0.17 -2.06 16 11 C -0.19 -6.00 10.03 22.26 0.22 -5.78 16 12 C -0.07 -2.49 10.03 22.30 0.22 -2.26 16 13 C -0.25 -11.12 9.16 22.36 0.20 -10.92 16 14 C 0.12 5.99 6.66 22.86 0.15 6.14 16 15 O -0.22 -13.17 9.21 -21.33 -0.20 -13.36 16 16 C -0.42 -24.38 9.49 67.92 0.64 -23.74 16 17 H 0.10 5.31 5.21 -2.91 -0.02 5.30 16 18 C -0.02 -1.09 5.49 84.83 0.47 -0.62 16 19 N -0.91 -56.04 13.67 21.61 0.30 -55.75 16 20 Si 1.02 43.13 29.55 68.60 2.03 45.16 16 21 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 22 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 24 H 0.00 0.14 8.05 -2.39 -0.02 0.12 16 25 H 0.08 1.63 7.44 -2.39 -0.02 1.61 16 26 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 27 H 0.34 10.25 8.43 -89.69 -0.76 9.50 16 28 H 0.07 1.48 7.06 -2.39 -0.02 1.46 16 29 H 0.06 1.30 7.45 -2.39 -0.02 1.28 16 30 H 0.06 1.36 6.27 -2.39 -0.01 1.35 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 2.00 6.96 -2.38 -0.02 1.98 16 33 H 0.06 1.64 8.07 -2.39 -0.02 1.62 16 34 H 0.09 4.12 8.06 -2.91 -0.02 4.09 16 35 H 0.15 4.12 4.86 -2.91 -0.01 4.11 16 36 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 37 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 38 H 0.12 5.27 5.64 -2.91 -0.02 5.26 16 39 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -68.91 317.01 3.95 -64.96 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: 0.31 Total: 34.64 kcal Atomic # 6 Polarization: -58.03 SS G_CDS: 4.88 Total: -53.16 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -3.06 Total: -78.24 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.20 Total: -13.36 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -68.91 3.95 -64.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379688513.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.492 kcal (2) G-P(sol) polarization free energy of solvation -68.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds