Wall clock time and date at job start Mon Mar 30 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46896 * 111.00059 * 2 1 4 4 H 1.08997 * 109.47007 * 324.99264 * 3 2 1 5 5 C 1.52996 * 109.47413 * 84.99925 * 3 2 1 6 6 C 1.50698 * 109.47020 * 204.99792 * 3 2 1 7 7 C 1.50699 * 119.99994 * 303.52739 * 6 3 2 8 8 C 1.32668 * 119.99991 * 123.52928 * 6 3 2 9 9 C 1.47678 * 120.00219 * 7.45504 * 8 6 3 10 10 C 1.39504 * 120.17860 * 43.03557 * 9 8 6 11 11 C 1.37952 * 119.91808 * 180.02562 * 10 9 8 12 12 C 1.38476 * 120.29919 * 0.02562 * 11 10 9 13 13 C 1.38117 * 120.36830 * 359.69399 * 12 11 10 14 14 C 1.38736 * 120.07150 * 0.56297 * 13 12 11 15 15 O 1.35635 * 120.15073 * 179.74363 * 14 13 12 16 16 C 1.34815 * 117.00061 * 5.64829 * 15 14 13 17 17 H 1.07994 * 119.99670 * 354.92054 * 16 15 14 18 18 C 1.38643 * 119.99643 * 174.64145 * 16 15 14 19 19 N 1.31554 * 120.00456 * 0.28172 * 18 16 15 20 20 Si 1.86807 * 119.99666 * 180.27573 * 18 16 15 21 21 H 1.48499 * 109.47099 * 60.00112 * 20 18 16 22 22 H 1.48494 * 109.47234 * 180.02562 * 20 18 16 23 23 H 1.48509 * 109.47054 * 300.00147 * 20 18 16 24 24 H 1.09007 * 109.47223 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47476 * 300.00431 * 1 2 3 26 26 H 1.09004 * 109.47181 * 60.00418 * 1 2 3 27 27 H 1.00903 * 111.00231 * 236.03759 * 2 1 3 28 28 H 1.09006 * 109.47465 * 59.99776 * 5 3 2 29 29 H 1.08998 * 109.47377 * 179.97438 * 5 3 2 30 30 H 1.09003 * 109.47141 * 299.99912 * 5 3 2 31 31 H 1.09003 * 109.47296 * 269.99877 * 7 6 3 32 32 H 1.08995 * 109.47471 * 30.00383 * 7 6 3 33 33 H 1.09003 * 109.47535 * 149.99904 * 7 6 3 34 34 H 1.08012 * 119.99883 * 187.45270 * 8 6 3 35 35 H 1.07993 * 120.04056 * 0.04870 * 10 9 8 36 36 H 1.08005 * 119.85092 * 179.97438 * 11 10 9 37 37 H 1.08005 * 119.81540 * 179.97438 * 12 11 10 38 38 H 1.08007 * 119.96820 * 180.29883 * 13 12 11 39 39 H 0.97004 * 120.00054 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3398 2.0122 -0.5895 5 6 2.0608 1.8926 1.4369 6 6 3.3776 1.3788 -0.6004 7 6 4.4576 0.5053 -0.0161 8 6 3.6436 2.1545 -1.6434 9 6 2.6393 3.1298 -2.1135 10 6 1.9288 3.9028 -1.1949 11 6 0.9915 4.8119 -1.6399 12 6 0.7516 4.9611 -2.9956 13 6 1.4522 4.2062 -3.9158 14 6 2.3945 3.2835 -3.4850 15 8 3.0797 2.5377 -4.3871 16 6 2.8846 2.8219 -5.6905 17 1 2.1471 3.5564 -5.9784 18 6 3.6348 2.1753 -6.6607 19 7 4.5332 1.2806 -6.3099 20 14 3.3699 2.5747 -8.4663 21 1 3.6455 4.0150 -8.7002 22 1 4.2887 1.7535 -9.2949 23 1 1.9645 2.2727 -8.8390 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8306 -0.5262 -0.7813 28 1 2.7165 1.2518 2.0265 29 1 2.4518 2.9100 1.4370 30 1 1.0610 1.8873 1.8713 31 1 4.9899 1.0555 0.7599 32 1 4.0079 -0.3887 0.4158 33 1 5.1565 0.2171 -0.8014 34 1 4.5947 2.0726 -2.1486 35 1 2.1125 3.7899 -0.1367 36 1 0.4417 5.4095 -0.9278 37 1 0.0157 5.6749 -3.3353 38 1 1.2633 4.3312 -4.9719 39 1 5.0583 0.8285 -6.9888 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379688514.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:40 Heat of formation + Delta-G solvation = -7.701269 kcal Electronic energy + Delta-G solvation = -19726.816317 eV Core-core repulsion = 16827.546216 eV Total energy + Delta-G solvation = -2899.270102 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.99988 -39.18328 -37.76344 -35.04458 -34.31156 -31.92490 -31.06616 -30.23450 -27.73246 -27.10383 -26.33486 -23.87619 -22.73812 -22.29610 -19.85500 -19.46119 -18.57667 -17.01223 -16.73769 -16.28552 -16.14851 -15.72882 -15.49930 -15.28574 -15.06638 -14.46740 -14.33386 -14.18362 -13.70851 -13.57764 -13.38038 -13.13608 -13.06818 -12.98123 -12.61046 -12.48693 -12.30554 -12.24960 -12.18851 -12.10328 -11.51611 -11.12125 -10.83038 -10.34138 -9.58167 -9.18153 -8.73133 -8.48753 -6.16037 0.25884 0.71162 1.32383 1.42319 1.44534 1.48350 2.15212 2.82846 3.16479 3.38090 3.48126 3.79709 3.99195 4.12249 4.24332 4.33573 4.43528 4.52918 4.58608 4.59796 4.66389 4.76422 4.80140 4.91749 4.92977 4.97326 5.07079 5.08598 5.09382 5.18279 5.29151 5.42767 5.55346 5.61723 5.73358 5.79287 5.88204 6.01586 6.15168 6.22270 6.38398 6.95509 7.77173 8.73387 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.020118 B = 0.006074 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.468224 B = 4608.443395 C = 5252.155738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.687 5.687 3 C 0.111 3.889 4 H 0.051 0.949 5 C -0.130 4.130 6 C -0.128 4.128 7 C -0.103 4.103 8 C -0.108 4.108 9 C -0.145 4.145 10 C -0.065 4.065 11 C -0.195 4.195 12 C -0.072 4.072 13 C -0.251 4.251 14 C 0.118 3.882 15 O -0.218 6.218 16 C -0.418 4.418 17 H 0.099 0.901 18 C -0.019 4.019 19 N -0.915 5.915 20 Si 1.015 2.985 21 H -0.258 1.258 22 H -0.271 1.271 23 H -0.258 1.258 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.006 0.994 27 H 0.336 0.664 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.146 0.854 36 H 0.152 0.848 37 H 0.144 0.856 38 H 0.117 0.883 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.774 2.368 11.981 13.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.317 5.317 3 C 0.002 3.998 4 H 0.068 0.932 5 C -0.187 4.187 6 C -0.128 4.128 7 C -0.160 4.160 8 C -0.127 4.127 9 C -0.146 4.146 10 C -0.082 4.082 11 C -0.213 4.213 12 C -0.089 4.089 13 C -0.270 4.270 14 C 0.067 3.933 15 O -0.124 6.124 16 C -0.494 4.494 17 H 0.116 0.884 18 C -0.217 4.217 19 N -0.553 5.553 20 Si 0.835 3.165 21 H -0.183 1.183 22 H -0.195 1.195 23 H -0.182 1.182 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.024 0.976 27 H 0.153 0.847 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.163 0.837 36 H 0.170 0.830 37 H 0.162 0.838 38 H 0.135 0.865 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.430 1.966 12.613 14.293 hybrid contribution 0.080 0.271 -2.353 2.370 sum -6.350 2.237 10.259 12.271 Atomic orbital electron populations 1.22274 0.87251 1.02439 1.00164 1.60635 1.08226 1.13493 1.49310 1.20834 0.91595 0.89951 0.97445 0.93161 1.21760 1.02482 1.00481 0.94017 1.22137 0.96747 0.97833 0.96094 1.20685 0.95745 0.99149 1.00388 1.21251 0.97553 0.97270 0.96592 1.18505 1.02940 1.03527 0.89628 1.21343 0.94342 0.93730 0.98820 1.21115 1.02215 1.02338 0.95616 1.21221 0.97462 0.97143 0.93123 1.21281 1.02357 1.02525 1.00831 1.20062 0.91944 0.90908 0.90344 1.83918 1.60147 1.52227 1.16101 1.21776 1.22773 1.25489 0.79338 0.88393 1.26527 0.94671 0.95442 1.05044 1.70176 1.23113 1.25766 1.36246 0.84697 0.79044 0.79013 0.73779 1.18259 1.19527 1.18243 0.90211 0.90509 0.97563 0.84690 0.91454 0.91856 0.91765 0.90015 0.90196 0.93375 0.89526 0.83656 0.83049 0.83810 0.86473 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.50 127.69 1.34 2.01 16 2 N -0.69 -18.83 6.19 -518.56 -3.21 -22.04 16 3 C 0.11 3.20 1.90 44.17 0.08 3.28 16 4 H 0.05 1.66 4.45 -2.39 -0.01 1.65 16 5 C -0.13 -2.93 8.90 71.98 0.64 -2.29 16 6 C -0.13 -4.24 4.64 -17.62 -0.08 -4.32 16 7 C -0.10 -2.88 9.57 71.24 0.68 -2.20 16 8 C -0.11 -4.48 8.92 23.60 0.21 -4.27 16 9 C -0.14 -6.25 5.05 -20.01 -0.10 -6.35 16 10 C -0.06 -2.21 7.32 22.51 0.16 -2.04 16 11 C -0.19 -6.01 10.03 22.26 0.22 -5.79 16 12 C -0.07 -2.46 10.03 22.30 0.22 -2.24 16 13 C -0.25 -11.11 9.16 22.36 0.20 -10.90 16 14 C 0.12 5.99 6.66 22.86 0.15 6.14 16 15 O -0.22 -13.16 9.21 -21.32 -0.20 -13.35 16 16 C -0.42 -24.51 9.49 67.92 0.64 -23.87 16 17 H 0.10 5.30 5.21 -2.91 -0.02 5.29 16 18 C -0.02 -1.07 5.49 84.83 0.47 -0.60 16 19 N -0.92 -56.18 13.67 21.61 0.30 -55.89 16 20 Si 1.02 43.07 29.55 68.60 2.03 45.10 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 23 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 24 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 25 H 0.08 1.59 7.44 -2.39 -0.02 1.57 16 26 H 0.01 0.16 8.06 -2.39 -0.02 0.14 16 27 H 0.34 10.09 8.43 -89.69 -0.76 9.33 16 28 H 0.07 1.45 7.86 -2.38 -0.02 1.43 16 29 H 0.06 1.33 6.56 -2.39 -0.02 1.32 16 30 H 0.06 1.28 7.45 -2.39 -0.02 1.26 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.08 2.03 7.70 -2.39 -0.02 2.02 16 33 H 0.05 1.45 8.05 -2.39 -0.02 1.43 16 34 H 0.09 4.09 8.04 -2.90 -0.02 4.06 16 35 H 0.15 4.11 4.98 -2.91 -0.01 4.10 16 36 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 37 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 38 H 0.12 5.28 5.64 -2.91 -0.02 5.26 16 39 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -68.99 318.17 4.07 -64.92 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: 0.30 Total: 34.70 kcal Atomic # 6 Polarization: -58.29 SS G_CDS: 4.85 Total: -53.44 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -2.92 Total: -77.93 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.20 Total: -13.35 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -68.99 4.07 -64.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379688514.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.220 kcal (2) G-P(sol) polarization free energy of solvation -68.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds