Wall clock time and date at job start Mon Mar 30 2020 06:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46901 * 109.47367 * 2 1 4 4 C 1.46894 * 110.99998 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47532 * 35.00260 * 4 3 2 6 6 C 1.53005 * 109.47080 * 274.99952 * 4 3 2 7 7 C 1.50701 * 109.47294 * 155.00424 * 4 3 2 8 8 C 1.32644 * 119.99780 * 245.10112 * 7 4 3 9 9 C 1.47724 * 120.00181 * 8.61213 * 8 7 4 10 10 C 1.39651 * 120.07137 * 221.85210 * 9 8 7 11 11 C 1.37781 * 119.92245 * 179.79078 * 10 9 8 12 12 C 1.39033 * 120.07404 * 0.47913 * 11 10 9 13 13 O 1.35681 * 119.92357 * 179.76973 * 12 11 10 14 14 C 1.34815 * 116.99611 * 174.44068 * 13 12 11 15 15 H 1.07993 * 120.00392 * 5.05988 * 14 13 12 16 16 C 1.38646 * 119.99461 * 185.06196 * 14 13 12 17 17 N 1.31560 * 120.00613 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99560 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47065 * 89.99924 * 18 16 14 20 20 H 1.48500 * 109.46813 * 210.00012 * 18 16 14 21 21 H 1.48497 * 109.47074 * 329.99682 * 18 16 14 22 22 C 1.39027 * 120.14603 * 359.74879 * 12 11 10 23 23 C 1.37783 * 120.07266 * 0.02562 * 22 12 11 24 24 H 1.08999 * 109.47248 * 60.00098 * 1 2 3 25 25 H 1.09009 * 109.47392 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47046 * 299.99845 * 1 2 3 27 27 H 1.09000 * 109.47046 * 240.00155 * 2 1 3 28 28 H 1.08998 * 109.47232 * 120.00456 * 2 1 3 29 29 H 1.00894 * 110.99901 * 303.95935 * 3 2 1 30 30 H 1.09001 * 109.46709 * 180.02562 * 6 4 3 31 31 H 1.09000 * 109.47266 * 300.00011 * 6 4 3 32 32 H 1.09002 * 109.46962 * 60.00376 * 6 4 3 33 33 H 1.07997 * 120.00479 * 65.36438 * 7 4 3 34 34 H 1.08004 * 119.99995 * 188.61180 * 8 7 4 35 35 H 1.07997 * 120.03734 * 0.02562 * 10 9 8 36 36 H 1.08005 * 119.95838 * 180.20740 * 11 10 9 37 37 H 0.96998 * 119.99958 * 179.97438 * 17 16 14 38 38 H 1.08000 * 119.96504 * 179.97438 * 22 12 11 39 39 H 1.08000 * 120.03543 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4241 -0.0006 5 1 3.8735 0.5924 -0.5904 6 6 4.0019 1.3118 1.4362 7 6 3.9557 2.7248 -0.6010 8 6 4.6326 2.7233 -1.7417 9 6 4.7646 1.4751 -2.5206 10 6 5.9872 1.1428 -3.1081 11 6 6.1081 -0.0243 -3.8303 12 6 5.0120 -0.8659 -3.9829 13 8 5.1332 -2.0122 -4.6986 14 6 4.0692 -2.8400 -4.7131 15 1 3.1460 -2.5412 -4.2393 16 6 4.1605 -4.0751 -5.3363 17 7 5.2850 -4.4391 -5.9140 18 14 2.6860 -5.2219 -5.3570 19 1 1.8652 -4.9511 -6.5645 20 1 3.1551 -6.6307 -5.3830 21 1 1.8659 -4.9957 -4.1399 22 6 3.7922 -0.5357 -3.4033 23 6 3.6658 0.6276 -2.6759 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6441 1.9013 -0.7813 30 1 5.0915 1.3413 1.4357 31 1 3.6165 2.1435 2.0260 32 1 3.6637 0.3710 1.8705 33 1 3.7435 3.6579 -0.1003 34 1 5.0872 3.6347 -2.1011 35 1 6.8380 1.7981 -2.9933 36 1 7.0542 -0.2835 -4.2821 37 1 5.3489 -5.3034 -6.3496 38 1 2.9425 -1.1914 -3.5240 39 1 2.7180 0.8833 -2.2256 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379699786.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:38 Heat of formation + Delta-G solvation = 9.417348 kcal Electronic energy + Delta-G solvation = -19343.030456 eV Core-core repulsion = 16444.502674 eV Total energy + Delta-G solvation = -2898.527783 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.34497 -37.91540 -36.24329 -33.71930 -32.34044 -30.92610 -30.29509 -28.19106 -27.69456 -25.38999 -23.30063 -22.10464 -21.66900 -20.86246 -18.73464 -18.07712 -17.10805 -16.01249 -15.28163 -14.94560 -14.68233 -14.55438 -13.93711 -13.79757 -13.66461 -13.36565 -13.05618 -12.73596 -12.38548 -12.36417 -12.05195 -11.78013 -11.65380 -11.39462 -11.33722 -11.10579 -11.01691 -10.88788 -10.70234 -10.50327 -10.22240 -9.45012 -9.25344 -8.76478 -8.45611 -8.10895 -7.08449 -6.53853 -4.11609 1.73672 2.14643 2.78839 3.08096 3.09295 3.13418 3.89630 4.33519 4.52153 4.96204 5.01914 5.18660 5.20294 5.24051 5.32733 5.48949 5.52438 5.61812 5.65645 5.70144 5.84550 5.87540 5.96696 6.04897 6.09779 6.14451 6.19599 6.27365 6.37570 6.57740 6.66816 6.79953 6.85142 7.03752 7.16855 7.21897 7.30614 7.35696 7.51689 7.72813 7.90982 8.91463 9.60242 10.63656 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018088 B = 0.005772 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.632776 B = 4849.545319 C = 6054.633793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 N -0.683 5.683 4 C 0.101 3.899 5 H 0.071 0.929 6 C -0.133 4.133 7 C -0.183 4.183 8 C -0.076 4.076 9 C -0.171 4.171 10 C -0.058 4.058 11 C -0.194 4.194 12 C 0.159 3.841 13 O -0.172 6.172 14 C -0.393 4.393 15 H 0.093 0.907 16 C 0.041 3.959 17 N -0.859 5.859 18 Si 0.941 3.059 19 H -0.272 1.272 20 H -0.276 1.276 21 H -0.267 1.267 22 C -0.238 4.238 23 C -0.056 4.056 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.338 0.662 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.271 0.729 38 H 0.127 0.873 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.957 9.619 9.586 14.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 N -0.315 5.315 4 C -0.007 4.007 5 H 0.088 0.912 6 C -0.191 4.191 7 C -0.201 4.201 8 C -0.095 4.095 9 C -0.172 4.172 10 C -0.076 4.076 11 C -0.213 4.213 12 C 0.104 3.896 13 O -0.075 6.075 14 C -0.469 4.469 15 H 0.110 0.890 16 C -0.164 4.164 17 N -0.493 5.493 18 Si 0.765 3.235 19 H -0.198 1.198 20 H -0.201 1.201 21 H -0.191 1.191 22 C -0.258 4.258 23 C -0.074 4.074 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.157 0.843 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.081 0.919 38 H 0.144 0.856 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.737 9.341 10.003 14.482 hybrid contribution -0.572 -0.793 -0.941 1.357 sum -5.309 8.547 9.062 13.541 Atomic orbital electron populations 1.21755 0.95240 1.01612 1.02016 1.22022 0.95349 0.89931 1.01070 1.60739 1.07799 1.13452 1.49555 1.20842 0.87256 0.96161 0.96457 0.91180 1.21725 0.99968 1.01499 0.95879 1.23084 1.02393 0.97769 0.96878 1.21666 0.97574 0.96148 0.94111 1.18508 0.94735 0.97339 1.06636 1.20729 0.96102 0.95401 0.95410 1.20166 0.97861 0.96546 1.06777 1.19475 0.92906 0.87739 0.89489 1.83954 1.39926 1.25283 1.58328 1.21346 0.90942 0.96717 1.37858 0.88994 1.25312 0.98506 0.96667 0.95945 1.70035 1.25058 1.21431 1.32768 0.85711 0.79641 0.78979 0.79138 1.19762 1.20123 1.19124 1.21066 0.98610 0.99949 1.06126 1.20909 0.96874 0.93344 0.96292 0.92920 0.92297 0.92165 0.94465 0.91198 0.84346 0.92726 0.92518 0.93085 0.87118 0.87174 0.86827 0.86364 0.91864 0.85552 0.87711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.17 37.15 0.38 -1.23 16 2 C 0.05 0.58 5.91 -3.83 -0.02 0.55 16 3 N -0.68 -8.70 5.91 -107.95 -0.64 -9.34 16 4 C 0.10 1.38 1.86 -68.86 -0.13 1.25 16 5 H 0.07 1.14 4.60 -51.93 -0.24 0.90 16 6 C -0.13 -1.66 9.40 37.16 0.35 -1.31 16 7 C -0.18 -2.37 8.68 -36.20 -0.31 -2.69 16 8 C -0.08 -1.07 9.76 -37.60 -0.37 -1.43 16 9 C -0.17 -2.94 5.02 -104.97 -0.53 -3.47 16 10 C -0.06 -1.03 9.78 -39.22 -0.38 -1.42 16 11 C -0.19 -4.06 9.97 -39.45 -0.39 -4.45 16 12 C 0.16 3.78 6.65 -38.99 -0.26 3.52 16 13 O -0.17 -4.85 9.75 0.31 0.00 -4.85 16 14 C -0.39 -10.80 9.48 30.88 0.29 -10.50 16 15 H 0.09 2.34 5.19 -52.49 -0.27 2.07 16 16 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 17 N -0.86 -24.80 13.67 55.48 0.76 -24.04 16 18 Si 0.94 20.18 29.55 -169.99 -5.02 15.15 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 22 C -0.24 -5.10 9.15 -39.46 -0.36 -5.46 16 23 C -0.06 -1.02 7.08 -39.23 -0.28 -1.30 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.54 6.97 -51.93 -0.36 0.17 16 28 H 0.07 0.89 7.44 -51.93 -0.39 0.50 16 29 H 0.34 4.20 7.56 -39.29 -0.30 3.91 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.63 7.45 -51.93 -0.39 0.24 16 33 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.11 1.34 8.06 -52.48 -0.42 0.91 16 35 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 37 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.13 2.72 5.62 -52.49 -0.29 2.43 16 39 H 0.11 1.70 4.54 -52.49 -0.24 1.46 16 LS Contribution 319.23 15.07 4.81 4.81 Total: -1.00 -28.87 319.23 -7.62 -36.49 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -5.42 Total: 8.70 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: -2.11 Total: -26.92 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.12 Total: -33.38 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: 0.00 Total: -4.85 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.87 -7.62 -36.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379699786.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.907 kcal (2) G-P(sol) polarization free energy of solvation -28.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds