Wall clock time and date at job start Mon Mar 30 2020 06:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46909 * 109.47250 * 2 1 4 4 C 1.46895 * 111.00067 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47143 * 324.99166 * 4 3 2 6 6 C 1.52999 * 109.47217 * 84.99749 * 4 3 2 7 7 C 1.50701 * 109.46893 * 204.99876 * 4 3 2 8 8 C 1.32645 * 120.00257 * 118.11010 * 7 4 3 9 9 C 1.47725 * 119.99596 * 352.90012 * 8 7 4 10 10 C 1.39651 * 120.06969 * 138.48074 * 9 8 7 11 11 C 1.37777 * 119.92390 * 179.97438 * 10 9 8 12 12 C 1.39027 * 120.07289 * 0.25335 * 11 10 9 13 13 O 1.35684 * 119.92733 * 179.74617 * 12 11 10 14 14 C 1.34815 * 116.99729 * 5.74337 * 13 12 11 15 15 H 1.08002 * 120.00211 * 5.11918 * 14 13 12 16 16 C 1.38646 * 119.99778 * 185.11136 * 14 13 12 17 17 N 1.31563 * 120.00157 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99748 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47288 * 60.00661 * 18 16 14 20 20 H 1.48506 * 109.47226 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47472 * 300.00439 * 18 16 14 22 22 C 1.39038 * 120.14917 * 359.48732 * 12 11 10 23 23 C 1.37776 * 120.06720 * 0.51380 * 22 12 11 24 24 H 1.09000 * 109.47132 * 59.99869 * 1 2 3 25 25 H 1.08998 * 109.47379 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47326 * 300.00280 * 1 2 3 27 27 H 1.08992 * 109.47333 * 239.99624 * 2 1 3 28 28 H 1.08999 * 109.47106 * 119.99345 * 2 1 3 29 29 H 1.00903 * 110.99694 * 56.04053 * 3 2 1 30 30 H 1.08991 * 109.47123 * 60.00159 * 6 4 3 31 31 H 1.09005 * 109.46795 * 179.97438 * 6 4 3 32 32 H 1.08994 * 109.47151 * 299.99769 * 6 4 3 33 33 H 1.08008 * 119.99646 * 298.10592 * 7 4 3 34 34 H 1.08002 * 120.00194 * 172.89960 * 8 7 4 35 35 H 1.07997 * 120.03575 * 359.95309 * 10 9 8 36 36 H 1.07999 * 119.95992 * 179.97438 * 11 10 9 37 37 H 0.97002 * 119.99957 * 179.97438 * 17 16 14 38 38 H 1.07995 * 119.96439 * 180.23145 * 22 12 11 39 39 H 1.08000 * 120.03599 * 179.76197 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4881 1.4242 -0.0006 5 1 3.8740 0.5924 0.5887 6 6 4.0007 1.3123 -1.4378 7 6 3.9561 2.7248 0.5998 8 6 4.6883 2.7193 1.7059 9 6 4.9137 1.4550 2.4360 10 6 6.1757 1.1641 2.9585 11 6 6.3824 -0.0157 3.6394 12 6 5.3376 -0.9184 3.8021 13 8 5.5458 -2.0817 4.4687 14 6 6.7513 -2.2471 5.0493 15 1 7.4692 -1.4402 5.0426 16 6 7.0693 -3.4530 5.6551 17 7 6.1949 -4.4360 5.6630 18 14 8.7398 -3.6823 6.4589 19 1 8.9096 -2.6810 7.5423 20 1 8.8308 -5.0502 7.0300 21 1 9.8074 -3.4986 5.4432 22 6 4.0786 -0.6295 3.2878 23 6 3.8652 0.5485 2.6059 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8932 -0.5137 0.8900 29 1 1.6440 1.9013 0.7813 30 1 3.6148 2.1441 -2.0270 31 1 5.0903 1.3418 -1.4382 32 1 3.6622 0.3717 -1.8721 33 1 3.6953 3.6615 0.1295 34 1 5.1197 3.6390 2.0725 35 1 6.9887 1.8630 2.8286 36 1 7.3582 -0.2414 4.0434 37 1 6.4176 -5.2797 6.0865 38 1 3.2682 -1.3312 3.4192 39 1 2.8880 0.7707 2.2033 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379699787.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:40 Heat of formation + Delta-G solvation = 10.058997 kcal Electronic energy + Delta-G solvation = -19147.696823 eV Core-core repulsion = 16249.196865 eV Total energy + Delta-G solvation = -2898.499959 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.34506 -37.94716 -36.23777 -33.72930 -32.34142 -30.94769 -30.29359 -28.20154 -27.66181 -25.46557 -23.23650 -22.14199 -21.70541 -20.86501 -18.76784 -18.09451 -16.92304 -16.18240 -15.24707 -15.03270 -14.58659 -14.57521 -13.97950 -13.78087 -13.67228 -13.37539 -12.94477 -12.81763 -12.42273 -12.32092 -12.12026 -11.78714 -11.67091 -11.42060 -11.34913 -11.07586 -11.04300 -10.85492 -10.71978 -10.48312 -10.21387 -9.52836 -9.20828 -8.76014 -8.48137 -8.09930 -7.07843 -6.53536 -4.11202 1.73720 2.14196 2.79526 3.08826 3.10873 3.12608 3.90197 4.31115 4.51684 4.95533 5.03214 5.13825 5.18955 5.22450 5.30975 5.47146 5.58165 5.60510 5.65472 5.68158 5.82335 5.85235 5.95026 6.02905 6.09245 6.12970 6.18379 6.30103 6.37738 6.55628 6.67795 6.73836 6.90427 7.01762 7.16705 7.20531 7.32591 7.35070 7.50055 7.72860 7.91169 8.91654 9.60362 10.63911 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.026300 B = 0.004495 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.372945 B = 6228.031341 C = 6895.358478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 N -0.684 5.684 4 C 0.098 3.902 5 H 0.074 0.926 6 C -0.133 4.133 7 C -0.183 4.183 8 C -0.075 4.075 9 C -0.172 4.172 10 C -0.054 4.054 11 C -0.236 4.236 12 C 0.158 3.842 13 O -0.172 6.172 14 C -0.393 4.393 15 H 0.093 0.907 16 C 0.041 3.959 17 N -0.859 5.859 18 Si 0.942 3.058 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.269 1.269 22 C -0.197 4.197 23 C -0.059 4.059 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.036 0.964 29 H 0.338 0.662 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.128 0.872 37 H 0.272 0.728 38 H 0.116 0.884 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.577 10.189 -8.573 14.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 N -0.316 5.316 4 C -0.010 4.010 5 H 0.092 0.908 6 C -0.191 4.191 7 C -0.202 4.202 8 C -0.094 4.094 9 C -0.173 4.173 10 C -0.072 4.072 11 C -0.255 4.255 12 C 0.104 3.896 13 O -0.075 6.075 14 C -0.469 4.469 15 H 0.110 0.890 16 C -0.164 4.164 17 N -0.493 5.493 18 Si 0.766 3.234 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.194 1.194 22 C -0.217 4.217 23 C -0.078 4.078 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.054 0.946 29 H 0.157 0.843 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.146 0.854 37 H 0.082 0.918 38 H 0.135 0.865 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.788 9.765 -9.123 14.196 hybrid contribution 1.110 -0.314 1.292 1.732 sum -3.679 9.451 -7.831 12.813 Atomic orbital electron populations 1.21756 0.95234 1.01594 1.02051 1.22011 0.95335 0.89938 1.00996 1.60706 1.07855 1.13420 1.49600 1.20922 0.87181 0.96358 0.96588 0.90815 1.21720 1.00025 1.01464 0.95874 1.23075 1.02087 0.97818 0.97185 1.21658 0.97337 0.96055 0.94384 1.18503 0.94582 0.96505 1.07662 1.20835 0.95464 0.95830 0.95113 1.21112 1.00168 0.96564 1.07647 1.19480 0.93085 0.86939 0.90128 1.83966 1.35368 1.30470 1.57653 1.21317 0.91140 1.00399 1.34064 0.88981 1.25319 0.99663 0.94275 0.97185 1.70030 1.34498 1.03900 1.40889 0.85764 0.80143 0.78125 0.79336 1.19399 1.20177 1.19417 1.20110 0.95656 0.99253 1.06652 1.20769 0.97350 0.92929 0.96706 0.92141 0.92304 0.92922 0.91174 0.94600 0.84345 0.92548 0.92714 0.93089 0.87109 0.87195 0.87262 0.85386 0.91811 0.86545 0.87293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.17 37.15 0.38 -1.12 16 2 C 0.05 0.56 5.97 -3.82 -0.02 0.53 16 3 N -0.68 -8.37 5.93 -107.96 -0.64 -9.01 16 4 C 0.10 1.31 1.84 -68.87 -0.13 1.18 16 5 H 0.07 1.17 4.24 -51.93 -0.22 0.95 16 6 C -0.13 -1.66 9.40 37.16 0.35 -1.31 16 7 C -0.18 -2.36 8.70 -36.20 -0.31 -2.68 16 8 C -0.08 -1.06 9.77 -37.60 -0.37 -1.43 16 9 C -0.17 -2.95 5.11 -104.97 -0.54 -3.49 16 10 C -0.05 -0.99 9.78 -39.22 -0.38 -1.37 16 11 C -0.24 -5.06 9.12 -39.46 -0.36 -5.42 16 12 C 0.16 3.78 6.65 -38.99 -0.26 3.52 16 13 O -0.17 -4.85 9.75 0.29 0.00 -4.84 16 14 C -0.39 -10.82 9.44 30.88 0.29 -10.53 16 15 H 0.09 2.33 5.27 -52.49 -0.28 2.06 16 16 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 17 N -0.86 -24.81 13.67 55.48 0.76 -24.05 16 18 Si 0.94 20.13 29.55 -169.99 -5.02 15.11 16 19 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 C -0.20 -4.14 9.98 -39.45 -0.39 -4.53 16 23 C -0.06 -1.06 7.20 -39.23 -0.28 -1.34 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.85 7.43 -51.93 -0.39 0.46 16 28 H 0.04 0.48 7.03 -51.93 -0.37 0.11 16 29 H 0.34 3.99 7.92 -39.29 -0.31 3.68 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.62 7.45 -51.93 -0.39 0.24 16 33 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 34 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 36 H 0.13 2.74 5.69 -52.49 -0.30 2.44 16 37 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 39 H 0.11 1.71 4.69 -52.49 -0.25 1.46 16 LS Contribution 319.82 15.07 4.82 4.82 Total: -1.00 -28.89 319.82 -7.64 -36.53 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -5.43 Total: 8.41 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: -2.12 Total: -26.97 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.12 Total: -33.06 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: 0.00 Total: -4.84 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.89 -7.64 -36.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379699787.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.584 kcal (2) G-P(sol) polarization free energy of solvation -28.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds