Wall clock time and date at job start Mon Mar 30 2020 06:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46909 * 109.47250 * 2 1 4 4 C 1.46895 * 111.00067 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47143 * 324.99166 * 4 3 2 6 6 C 1.52999 * 109.47217 * 84.99749 * 4 3 2 7 7 C 1.50701 * 109.46893 * 204.99876 * 4 3 2 8 8 C 1.32645 * 120.00257 * 118.11010 * 7 4 3 9 9 C 1.47725 * 119.99596 * 352.90012 * 8 7 4 10 10 C 1.39651 * 120.06969 * 138.48074 * 9 8 7 11 11 C 1.37777 * 119.92390 * 179.97438 * 10 9 8 12 12 C 1.39027 * 120.07289 * 0.25335 * 11 10 9 13 13 O 1.35684 * 119.92733 * 179.74617 * 12 11 10 14 14 C 1.34815 * 116.99729 * 5.74337 * 13 12 11 15 15 H 1.08002 * 120.00211 * 5.11918 * 14 13 12 16 16 C 1.38646 * 119.99778 * 185.11136 * 14 13 12 17 17 N 1.31563 * 120.00157 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99748 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47288 * 60.00661 * 18 16 14 20 20 H 1.48506 * 109.47226 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47472 * 300.00439 * 18 16 14 22 22 C 1.39038 * 120.14917 * 359.48732 * 12 11 10 23 23 C 1.37776 * 120.06720 * 0.51380 * 22 12 11 24 24 H 1.09000 * 109.47132 * 59.99869 * 1 2 3 25 25 H 1.08998 * 109.47379 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47326 * 300.00280 * 1 2 3 27 27 H 1.08992 * 109.47333 * 239.99624 * 2 1 3 28 28 H 1.08999 * 109.47106 * 119.99345 * 2 1 3 29 29 H 1.00903 * 110.99694 * 56.04053 * 3 2 1 30 30 H 1.08991 * 109.47123 * 60.00159 * 6 4 3 31 31 H 1.09005 * 109.46795 * 179.97438 * 6 4 3 32 32 H 1.08994 * 109.47151 * 299.99769 * 6 4 3 33 33 H 1.08008 * 119.99646 * 298.10592 * 7 4 3 34 34 H 1.08002 * 120.00194 * 172.89960 * 8 7 4 35 35 H 1.07997 * 120.03575 * 359.95309 * 10 9 8 36 36 H 1.07999 * 119.95992 * 179.97438 * 11 10 9 37 37 H 0.97002 * 119.99957 * 179.97438 * 17 16 14 38 38 H 1.07995 * 119.96439 * 180.23145 * 22 12 11 39 39 H 1.08000 * 120.03599 * 179.76197 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4881 1.4242 -0.0006 5 1 3.8740 0.5924 0.5887 6 6 4.0007 1.3123 -1.4378 7 6 3.9561 2.7248 0.5998 8 6 4.6883 2.7193 1.7059 9 6 4.9137 1.4550 2.4360 10 6 6.1757 1.1641 2.9585 11 6 6.3824 -0.0157 3.6394 12 6 5.3376 -0.9184 3.8021 13 8 5.5458 -2.0817 4.4687 14 6 6.7513 -2.2471 5.0493 15 1 7.4692 -1.4402 5.0426 16 6 7.0693 -3.4530 5.6551 17 7 6.1949 -4.4360 5.6630 18 14 8.7398 -3.6823 6.4589 19 1 8.9096 -2.6810 7.5423 20 1 8.8308 -5.0502 7.0300 21 1 9.8074 -3.4986 5.4432 22 6 4.0786 -0.6295 3.2878 23 6 3.8652 0.5485 2.6059 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8932 -0.5137 0.8900 29 1 1.6440 1.9013 0.7813 30 1 3.6148 2.1441 -2.0270 31 1 5.0903 1.3418 -1.4382 32 1 3.6622 0.3717 -1.8721 33 1 3.6953 3.6615 0.1295 34 1 5.1197 3.6390 2.0725 35 1 6.9887 1.8630 2.8286 36 1 7.3582 -0.2414 4.0434 37 1 6.4176 -5.2797 6.0865 38 1 3.2682 -1.3312 3.4192 39 1 2.8880 0.7707 2.2033 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379699787.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:39 Heat of formation + Delta-G solvation = -7.371546 kcal Electronic energy + Delta-G solvation = -19148.452669 eV Core-core repulsion = 16249.196865 eV Total energy + Delta-G solvation = -2899.255804 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.96108 -39.37178 -37.67047 -34.96584 -34.20466 -32.18153 -31.84565 -29.38058 -28.92899 -27.37901 -24.46365 -23.59952 -23.05855 -22.12664 -20.09266 -19.84751 -18.70792 -17.32972 -16.56930 -16.40759 -16.23494 -16.00385 -15.56942 -15.22688 -14.97171 -14.69813 -14.42902 -14.19116 -13.85557 -13.56342 -13.33348 -13.16945 -13.09780 -12.71590 -12.44184 -12.38975 -12.35448 -12.25391 -12.13504 -11.96609 -11.38334 -11.30113 -10.87737 -10.30221 -9.91502 -9.30166 -8.69865 -8.50538 -6.18205 0.31701 0.52704 1.34038 1.39811 1.50403 1.54306 2.15742 2.80382 3.13198 3.31711 3.43877 3.85647 4.03075 4.08062 4.10249 4.25964 4.28081 4.46745 4.48778 4.57886 4.63775 4.67385 4.81906 4.86128 4.94730 5.04212 5.08244 5.11444 5.15930 5.20396 5.30915 5.34888 5.41275 5.55386 5.64882 5.74710 5.89976 5.98108 6.10811 6.17289 6.50851 6.93757 7.72839 8.72207 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.026300 B = 0.004495 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.372945 B = 6228.031341 C = 6895.358478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 N -0.676 5.676 4 C 0.091 3.909 5 H 0.046 0.954 6 C -0.131 4.131 7 C -0.154 4.154 8 C -0.094 4.094 9 C -0.144 4.144 10 C -0.056 4.056 11 C -0.242 4.242 12 C 0.118 3.882 13 O -0.228 6.228 14 C -0.416 4.416 15 H 0.103 0.897 16 C -0.021 4.021 17 N -0.919 5.919 18 Si 1.019 2.981 19 H -0.257 1.257 20 H -0.271 1.271 21 H -0.257 1.257 22 C -0.208 4.208 23 C -0.053 4.053 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.017 0.983 29 H 0.343 0.657 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.122 0.878 37 H 0.274 0.726 38 H 0.110 0.890 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.354 13.535 -10.121 17.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 N -0.308 5.308 4 C -0.017 4.017 5 H 0.064 0.936 6 C -0.189 4.189 7 C -0.172 4.172 8 C -0.113 4.113 9 C -0.145 4.145 10 C -0.074 4.074 11 C -0.262 4.262 12 C 0.067 3.933 13 O -0.134 6.134 14 C -0.492 4.492 15 H 0.120 0.880 16 C -0.219 4.219 17 N -0.556 5.556 18 Si 0.838 3.162 19 H -0.181 1.181 20 H -0.196 1.196 21 H -0.181 1.181 22 C -0.227 4.227 23 C -0.071 4.071 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.035 0.965 29 H 0.162 0.838 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.140 0.860 37 H 0.083 0.917 38 H 0.128 0.872 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.586 13.175 -10.704 17.584 hybrid contribution 0.825 -1.033 1.464 1.973 sum -3.761 12.141 -9.241 15.715 Atomic orbital electron populations 1.21711 0.93566 1.02206 1.02584 1.22024 0.96731 0.89627 0.99967 1.60728 1.06967 1.13450 1.49678 1.20950 0.87923 0.95870 0.96971 0.93624 1.21694 1.00019 1.01920 0.95232 1.23320 0.99298 0.98424 0.96148 1.21735 0.99223 0.95250 0.95086 1.19000 0.93527 0.97095 1.04891 1.21222 0.97089 0.95057 0.94040 1.21230 0.99352 0.97398 1.08179 1.19994 0.94899 0.86875 0.91543 1.83931 1.36145 1.32864 1.60507 1.21806 0.91442 1.01222 1.34747 0.87991 1.26609 1.04049 0.93571 0.97645 1.70179 1.37234 1.04739 1.43496 0.84647 0.74670 0.78369 0.78543 1.18083 1.19581 1.18092 1.20304 0.94733 1.00526 1.07142 1.21022 0.98851 0.91754 0.95428 0.91465 0.91764 0.92445 0.91510 0.96456 0.83819 0.91248 0.92733 0.93404 0.84239 0.84191 0.83639 0.85983 0.91736 0.87182 0.84942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 10.17 71.98 0.73 -1.87 16 2 C 0.05 1.03 5.97 86.30 0.52 1.54 16 3 N -0.68 -14.58 5.93 -495.47 -2.94 -17.52 16 4 C 0.09 2.17 1.84 44.17 0.08 2.25 16 5 H 0.05 1.36 4.24 -2.39 -0.01 1.35 16 6 C -0.13 -2.88 9.40 71.98 0.68 -2.20 16 7 C -0.15 -3.22 8.70 24.52 0.21 -3.00 16 8 C -0.09 -2.20 9.77 23.61 0.23 -1.97 16 9 C -0.14 -4.59 5.11 -20.09 -0.10 -4.69 16 10 C -0.06 -1.94 9.78 22.50 0.22 -1.72 16 11 C -0.24 -10.56 9.12 22.35 0.20 -10.36 16 12 C 0.12 5.91 6.65 22.65 0.15 6.06 16 13 O -0.23 -13.80 9.75 -21.86 -0.21 -14.02 16 14 C -0.42 -24.21 9.44 67.92 0.64 -23.57 16 15 H 0.10 5.41 5.27 -2.91 -0.02 5.40 16 16 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 17 N -0.92 -56.29 13.67 21.61 0.30 -56.00 16 18 Si 1.02 42.48 29.55 68.60 2.03 44.51 16 19 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 20 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 22 C -0.21 -9.02 9.98 22.35 0.22 -8.80 16 23 C -0.05 -1.82 7.20 22.50 0.16 -1.66 16 24 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 1.54 7.43 -2.39 -0.02 1.53 16 28 H 0.02 0.45 7.03 -2.39 -0.02 0.44 16 29 H 0.34 6.90 7.92 -89.69 -0.71 6.19 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.05 1.08 7.45 -2.39 -0.02 1.06 16 33 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 34 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 35 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 36 H 0.12 5.36 5.69 -2.91 -0.02 5.35 16 37 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 38 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 39 H 0.13 3.92 4.69 -2.91 -0.01 3.90 16 Total: -1.00 -67.42 319.82 3.92 -63.50 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.34 Total: 30.22 kcal Atomic # 6 Polarization: -55.10 SS G_CDS: 4.41 Total: -50.69 kcal Atomic # 7 Polarization: -70.88 SS G_CDS: -2.64 Total: -73.52 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.21 Total: -14.02 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -67.42 3.92 -63.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379699787.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.124 kcal (2) G-P(sol) polarization free energy of solvation -67.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds