Wall clock time and date at job start Mon Mar 30 2020 06:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42909 * 109.46832 * 2 1 4 4 C 1.42901 * 113.99635 * 179.97438 * 3 2 1 5 5 C 1.53506 * 114.16919 * 209.99655 * 4 3 2 6 6 N 1.47480 * 87.93476 * 220.33287 * 5 4 3 7 7 C 1.46896 * 110.99854 * 138.70766 * 6 5 4 8 8 H 1.09003 * 109.47172 * 299.99810 * 7 6 5 9 9 C 1.50701 * 109.47669 * 59.99842 * 7 6 5 10 10 H 1.07998 * 120.00326 * 234.40973 * 9 7 6 11 11 C 1.37881 * 119.99944 * 54.40370 * 9 7 6 12 12 N 1.31519 * 119.99584 * 1.81416 * 11 9 7 13 13 Si 1.86796 * 120.00097 * 181.81047 * 11 9 7 14 14 H 1.48500 * 109.46861 * 90.00515 * 13 11 9 15 15 H 1.48503 * 109.47121 * 210.00045 * 13 11 9 16 16 H 1.48501 * 109.47338 * 330.00229 * 13 11 9 17 17 C 1.50702 * 109.47139 * 180.02562 * 7 6 5 18 18 C 1.38240 * 119.99759 * 328.38437 * 17 7 6 19 19 C 1.38234 * 119.99705 * 180.02562 * 18 17 7 20 20 C 1.38229 * 120.00358 * 359.95747 * 19 18 17 21 21 C 1.38239 * 119.99914 * 0.27645 * 20 19 18 22 22 C 1.38232 * 120.00000 * 359.51313 * 21 20 19 23 23 C 1.47469 * 87.83475 * 27.01154 * 6 5 4 24 24 H 1.08998 * 109.46924 * 60.00121 * 1 2 3 25 25 H 1.09001 * 109.47003 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47216 * 299.99933 * 1 2 3 27 27 H 1.09004 * 109.47473 * 240.00178 * 2 1 3 28 28 H 1.08996 * 109.47379 * 120.00132 * 2 1 3 29 29 H 1.09000 * 113.38737 * 343.08223 * 4 3 2 30 30 H 1.09007 * 113.47432 * 105.56450 * 5 4 3 31 31 H 1.09002 * 113.53346 * 335.11555 * 5 4 3 32 32 H 0.97000 * 119.99749 * 179.97438 * 12 11 9 33 33 H 1.08003 * 119.99824 * 359.97438 * 18 17 7 34 34 H 1.08006 * 119.99366 * 179.97438 * 19 18 17 35 35 H 1.07994 * 120.00314 * 180.02562 * 20 19 18 36 36 H 1.07998 * 119.99874 * 179.72565 * 21 20 19 37 37 H 1.07997 * 120.00209 * 180.25365 * 22 21 20 38 38 H 1.09007 * 113.48028 * 87.75861 * 23 6 5 39 39 H 1.08996 * 113.47781 * 218.22294 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.9613 2.7190 0.7008 6 7 4.9590 2.8345 -0.3792 7 6 5.1205 4.2328 -0.7994 8 1 4.1666 4.6155 -1.1624 9 6 5.5800 5.0601 0.3734 10 1 5.0251 5.9398 0.6642 11 6 6.7088 4.6938 1.0753 12 7 7.4046 3.6429 0.6995 13 14 7.2499 5.6901 2.5599 14 1 6.6130 5.1405 3.7836 15 1 8.7269 5.6156 2.6945 16 1 6.8399 7.1063 2.3818 17 6 6.1448 4.3109 -1.9020 18 6 7.1946 3.4120 -1.9351 19 6 8.1345 3.4840 -2.9461 20 6 8.0243 4.4542 -3.9245 21 6 6.9773 5.3561 -3.8887 22 6 6.0349 5.2815 -2.8802 23 6 4.0092 2.1252 -1.2564 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.9376 0.5402 0.2921 30 1 4.4006 2.5197 1.6783 31 1 3.2453 3.5407 0.7203 32 1 8.1990 3.3855 1.1931 33 1 7.2807 2.6540 -1.1705 34 1 8.9548 2.7819 -2.9717 35 1 8.7584 4.5102 -4.7146 36 1 6.8937 6.1169 -4.6506 37 1 5.2147 5.9835 -2.8545 38 1 3.3053 2.7878 -1.7601 39 1 4.4890 1.4226 -1.9377 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383081107.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:01 Heat of formation + Delta-G solvation = 26.196582 kcal Electronic energy + Delta-G solvation = -19917.781176 eV Core-core repulsion = 17019.980996 eV Total energy + Delta-G solvation = -2897.800181 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.52414 -37.89805 -36.49315 -33.26045 -31.12900 -30.49909 -29.65552 -27.58590 -25.36905 -24.64123 -22.75323 -22.28101 -21.32188 -19.94766 -19.11737 -16.90749 -16.29346 -15.54622 -15.38424 -15.11945 -14.66484 -14.09478 -13.64150 -13.52876 -13.34248 -12.66273 -12.47735 -12.31192 -12.21409 -11.86831 -11.75698 -11.48403 -11.41575 -11.02550 -10.92462 -10.75266 -10.52533 -10.38459 -10.12217 -9.71973 -9.67942 -9.15129 -8.91416 -8.56655 -7.75925 -7.55674 -7.38255 -5.93858 -4.16565 2.52607 2.65319 3.27390 3.34789 3.37911 3.99146 4.38214 5.01566 5.04358 5.15293 5.23095 5.27061 5.39836 5.45720 5.58846 5.65932 5.84382 5.94515 5.97301 6.01798 6.11762 6.19829 6.30770 6.37060 6.43560 6.53185 6.59553 6.74792 6.89371 7.00028 7.06204 7.23096 7.36255 7.58043 7.67170 7.71342 7.91029 8.06334 8.26345 8.32545 8.37899 8.91333 9.52171 10.98288 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.015610 B = 0.007304 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.249477 B = 3832.546985 C = 5081.903800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.379 6.379 4 C 0.047 3.953 5 C 0.036 3.964 6 N -0.417 5.417 7 C 0.216 3.784 8 H 0.010 0.990 9 C -0.530 4.530 10 H 0.059 0.941 11 C 0.086 3.914 12 N -0.837 5.837 13 Si 0.885 3.115 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.275 1.275 17 C -0.028 4.028 18 C -0.053 4.053 19 C -0.151 4.151 20 C -0.152 4.152 21 C -0.146 4.146 22 C -0.135 4.135 23 C -0.028 4.028 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.258 0.742 33 H 0.159 0.841 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.059 0.941 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.121 -5.850 -3.152 9.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.297 6.297 4 C -0.011 4.011 5 C -0.093 4.093 6 N -0.140 5.140 7 C 0.110 3.890 8 H 0.028 0.972 9 C -0.567 4.567 10 H 0.077 0.923 11 C -0.121 4.121 12 N -0.470 5.470 13 Si 0.712 3.288 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.200 1.200 17 C -0.030 4.030 18 C -0.071 4.071 19 C -0.169 4.169 20 C -0.170 4.170 21 C -0.164 4.164 22 C -0.154 4.154 23 C -0.158 4.158 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.177 0.823 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.077 0.923 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.379 -6.019 -3.015 8.617 hybrid contribution -0.023 0.945 0.614 1.127 sum -5.401 -5.074 -2.401 7.790 Atomic orbital electron populations 1.21739 0.94379 1.01705 1.02943 1.22426 0.95072 0.84856 0.99694 1.87949 1.21748 1.25444 1.94606 1.24064 0.79449 0.99073 0.98537 1.23568 0.93427 0.94250 0.98088 1.69205 1.27620 1.15251 1.01969 1.18786 0.91313 0.86573 0.92366 0.97233 1.20848 1.11689 1.11598 1.12610 0.92327 1.24911 0.95686 0.94637 0.96888 1.69947 1.15706 1.23912 1.37463 0.86717 0.77843 0.80777 0.83417 1.20594 1.21172 1.20007 1.20149 0.97663 0.93074 0.92071 1.21663 0.91262 0.99468 0.94719 1.21152 1.00047 0.99302 0.96431 1.20785 0.98799 0.97737 0.99662 1.20728 0.96481 0.99812 0.99379 1.20866 0.99418 0.99433 0.95672 1.24416 0.95630 0.99091 0.96665 0.92047 0.91591 0.92012 0.93736 0.93712 0.89204 0.90618 0.91756 0.93120 0.82340 0.88138 0.88378 0.88170 0.88006 0.92272 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 37.16 0.38 -1.21 16 2 C 0.06 0.73 6.50 37.16 0.24 0.97 16 3 O -0.38 -6.39 10.39 -35.23 -0.37 -6.75 16 4 C 0.05 0.83 4.65 -26.20 -0.12 0.71 16 5 C 0.04 0.75 6.70 -7.56 -0.05 0.70 16 6 N -0.42 -9.33 4.11 -239.47 -0.99 -10.32 16 7 C 0.22 5.24 1.60 -70.02 -0.11 5.12 16 8 H 0.01 0.24 7.45 -51.93 -0.39 -0.15 16 9 C -0.53 -13.90 7.91 -34.44 -0.27 -14.17 16 10 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 11 C 0.09 2.25 5.24 -17.82 -0.09 2.15 16 12 N -0.84 -21.94 8.96 55.43 0.50 -21.45 16 13 Si 0.88 20.63 29.54 -169.99 -5.02 15.61 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 C -0.03 -0.68 4.67 -104.62 -0.49 -1.16 16 18 C -0.05 -1.23 7.73 -39.58 -0.31 -1.54 16 19 C -0.15 -3.17 10.05 -39.59 -0.40 -3.57 16 20 C -0.15 -2.97 10.05 -39.58 -0.40 -3.36 16 21 C -0.15 -2.89 10.05 -39.58 -0.40 -3.29 16 22 C -0.14 -2.96 9.70 -39.58 -0.38 -3.34 16 23 C -0.03 -0.55 7.41 -7.57 -0.06 -0.61 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 1.50 7.88 -51.93 -0.41 1.09 16 30 H 0.08 1.63 8.14 -51.92 -0.42 1.21 16 31 H 0.06 1.38 7.89 -51.93 -0.41 0.97 16 32 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 33 H 0.16 3.99 5.70 -52.48 -0.30 3.69 16 34 H 0.10 1.89 8.06 -52.48 -0.42 1.46 16 35 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 38 H 0.06 1.17 7.54 -51.93 -0.39 0.78 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 318.67 15.07 4.80 4.80 Total: -1.00 -27.24 318.67 -9.62 -36.86 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.09 Total: 3.83 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -2.45 Total: -22.60 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: -0.49 Total: -31.76 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.37 Total: -6.75 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.24 -9.62 -36.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383081107.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.060 kcal (2) G-P(sol) polarization free energy of solvation -27.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds