Wall clock time and date at job start Mon Mar 30 2020 06:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.46901 * 2 1 4 4 C 1.42897 * 113.99784 * 180.02562 * 3 2 1 5 5 C 1.53513 * 114.17309 * 150.00062 * 4 3 2 6 6 N 1.47478 * 87.93208 * 87.62095 * 5 4 3 7 7 C 1.46900 * 111.00220 * 138.70441 * 6 5 4 8 8 H 1.09007 * 109.46678 * 57.27237 * 7 6 5 9 9 C 1.50700 * 109.47100 * 297.27208 * 7 6 5 10 10 H 1.08000 * 120.00051 * 294.28685 * 9 7 6 11 11 C 1.37878 * 119.99906 * 114.29341 * 9 7 6 12 12 N 1.31512 * 120.00250 * 354.73006 * 11 9 7 13 13 Si 1.86803 * 119.99889 * 174.73258 * 11 9 7 14 14 H 1.48503 * 109.47099 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.46949 * 119.99830 * 13 11 9 16 16 H 1.48494 * 109.47408 * 239.99691 * 13 11 9 17 17 C 1.50698 * 109.47281 * 177.26830 * 7 6 5 18 18 C 1.38229 * 120.00007 * 47.52386 * 17 7 6 19 19 C 1.38240 * 120.00190 * 179.76693 * 18 17 7 20 20 C 1.38230 * 119.99404 * 0.50090 * 19 18 17 21 21 C 1.38235 * 120.00836 * 359.75211 * 20 19 18 22 22 C 1.38238 * 119.99362 * 359.97438 * 21 20 19 23 23 C 1.47482 * 87.83768 * 27.01467 * 6 5 4 24 24 H 1.08998 * 109.47125 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47169 * 299.99938 * 1 2 3 26 26 H 1.09001 * 109.47345 * 60.00278 * 1 2 3 27 27 H 1.09001 * 109.47169 * 240.00062 * 2 1 3 28 28 H 1.08996 * 109.47570 * 120.00132 * 2 1 3 29 29 H 1.09004 * 113.26244 * 17.04566 * 4 3 2 30 30 H 1.09002 * 113.47608 * 332.85369 * 5 4 3 31 31 H 1.08996 * 113.53447 * 202.39594 * 5 4 3 32 32 H 0.96999 * 120.00513 * 179.97438 * 12 11 9 33 33 H 1.08000 * 120.00045 * 359.97438 * 18 17 7 34 34 H 1.07995 * 120.00201 * 180.23234 * 19 18 17 35 35 H 1.08004 * 119.99801 * 179.72333 * 20 19 18 36 36 H 1.07995 * 120.00660 * 179.97438 * 21 20 19 37 37 H 1.07997 * 119.99962 * 179.97438 * 22 21 20 38 38 H 1.08995 * 113.47724 * 87.75572 * 23 6 5 39 39 H 1.08997 * 113.47375 * 218.22790 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4307 1.4601 -0.0006 5 6 3.9613 2.7190 -0.7009 6 7 3.8280 3.4264 0.5863 7 6 4.9797 4.3063 0.8253 8 1 5.0736 5.0136 0.0012 9 6 6.2343 3.4769 0.9209 10 1 6.3618 2.7830 1.7386 11 6 7.2194 3.6041 -0.0353 12 7 7.0214 4.3707 -1.0855 13 14 8.8352 2.6875 0.1606 14 1 8.8078 1.8994 1.4189 15 1 9.0283 1.7725 -0.9931 16 1 9.9543 3.6623 0.2120 17 6 4.7767 5.0607 2.1139 18 6 4.3763 4.3878 3.2530 19 6 4.1948 5.0790 4.4364 20 6 4.4036 6.4448 4.4779 21 6 4.7989 7.1187 3.3376 22 6 4.9859 6.4266 2.1557 23 6 4.0092 2.1251 1.2564 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.9354 0.5397 -0.2945 30 1 3.2952 3.0982 -1.4758 31 1 4.9929 2.6261 -1.0404 32 1 7.7145 4.4605 -1.7581 33 1 4.2086 3.3214 3.2194 34 1 3.8856 4.5526 5.3273 35 1 4.2574 6.9856 5.4013 36 1 4.9617 8.1858 3.3699 37 1 5.2944 6.9530 1.2646 38 1 5.0536 1.8728 1.4397 39 1 3.3835 2.0010 2.1402 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383081109.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:03 Heat of formation + Delta-G solvation = 23.386708 kcal Electronic energy + Delta-G solvation = -19891.406171 eV Core-core repulsion = 16993.484145 eV Total energy + Delta-G solvation = -2897.922026 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.64398 -38.07950 -36.42012 -33.14063 -31.38167 -30.52939 -30.06569 -27.52281 -25.48749 -24.84199 -22.73124 -22.55178 -21.56678 -19.99412 -19.03348 -16.63513 -16.38058 -15.84364 -15.39012 -15.10333 -14.76460 -14.21407 -13.93757 -13.54839 -13.20874 -13.06164 -12.56070 -12.33377 -12.16911 -12.04881 -11.90736 -11.66355 -11.21174 -11.09088 -11.00365 -10.69402 -10.64470 -10.28356 -10.03522 -9.88197 -9.63763 -9.19634 -8.82535 -8.68893 -8.10008 -7.89319 -7.37990 -6.24929 -4.35939 2.23434 2.29708 3.14457 3.24494 3.27732 4.04982 4.21745 4.67298 5.05144 5.14810 5.26119 5.36419 5.45591 5.57083 5.62003 5.65377 5.71562 5.79812 5.85047 6.04979 6.11743 6.17010 6.29473 6.36319 6.46815 6.58172 6.73821 6.78399 6.83801 6.87660 6.97208 7.08326 7.25787 7.38332 7.57836 7.60106 7.76401 7.83843 7.93377 8.06730 8.40186 8.79433 9.30341 10.76876 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.012600 B = 0.008428 C = 0.005673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.722287 B = 3321.560747 C = 4934.187348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.357 6.357 4 C 0.047 3.953 5 C 0.020 3.980 6 N -0.469 5.469 7 C 0.182 3.818 8 H 0.087 0.913 9 C -0.535 4.535 10 H 0.064 0.936 11 C 0.076 3.924 12 N -0.879 5.879 13 Si 0.889 3.111 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.280 1.280 17 C -0.013 4.013 18 C -0.117 4.117 19 C -0.129 4.129 20 C -0.153 4.153 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.019 4.019 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.267 0.733 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.142 -4.572 3.473 8.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.276 6.276 4 C -0.011 4.011 5 C -0.109 4.109 6 N -0.191 5.191 7 C 0.075 3.925 8 H 0.105 0.895 9 C -0.574 4.574 10 H 0.082 0.918 11 C -0.129 4.129 12 N -0.515 5.515 13 Si 0.716 3.284 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.206 1.206 17 C -0.014 4.014 18 C -0.135 4.135 19 C -0.147 4.147 20 C -0.172 4.172 21 C -0.144 4.144 22 C -0.143 4.143 23 C -0.148 4.148 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.077 0.923 33 H 0.134 0.866 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.123 0.877 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.758 -3.874 3.434 8.513 hybrid contribution 2.001 -0.966 0.015 2.222 sum -4.756 -4.840 3.449 7.612 Atomic orbital electron populations 1.21716 0.94328 1.01539 1.03032 1.22437 0.95125 0.85152 0.99458 1.87962 1.20543 1.24575 1.94550 1.23403 0.80612 0.97671 0.99459 1.23816 1.01203 0.91321 0.94571 1.69253 1.38655 1.07552 1.03651 1.19120 0.87936 0.93763 0.91669 0.89486 1.21395 1.02947 1.22781 1.10251 0.91811 1.25028 0.98361 0.94764 0.94728 1.69902 1.34021 1.37839 1.09779 0.86575 0.83686 0.79773 0.78336 1.19505 1.20772 1.20624 1.20372 0.91314 0.92948 0.96795 1.21099 1.00096 0.99972 0.92361 1.20996 1.01675 0.94453 0.97587 1.20814 1.03976 0.94648 0.97734 1.20956 1.01149 0.98878 0.93422 1.21029 1.01290 0.94431 0.97558 1.24482 1.01634 0.92554 0.96119 0.91701 0.91964 0.92034 0.93970 0.93902 0.91655 0.91802 0.88061 0.92339 0.86572 0.87569 0.87634 0.87424 0.86791 0.87720 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.28 37.16 0.38 -1.33 16 2 C 0.06 0.76 6.50 37.16 0.24 1.01 16 3 O -0.36 -6.54 10.39 -35.23 -0.37 -6.91 16 4 C 0.05 0.88 4.66 -26.20 -0.12 0.76 16 5 C 0.02 0.43 7.42 -7.54 -0.06 0.38 16 6 N -0.47 -10.61 6.19 -239.41 -1.48 -12.09 16 7 C 0.18 4.39 2.44 -70.02 -0.17 4.22 16 8 H 0.09 2.36 6.75 -51.92 -0.35 2.01 16 9 C -0.54 -13.37 5.58 -34.44 -0.19 -13.56 16 10 H 0.06 1.60 6.34 -52.49 -0.33 1.27 16 11 C 0.08 1.94 4.83 -17.82 -0.09 1.85 16 12 N -0.88 -23.25 12.45 55.43 0.69 -22.56 16 13 Si 0.89 19.88 29.54 -169.99 -5.02 14.86 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 C -0.01 -0.30 4.94 -104.63 -0.52 -0.82 16 18 C -0.12 -2.44 9.17 -39.58 -0.36 -2.80 16 19 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 20 C -0.15 -2.68 10.05 -39.59 -0.40 -3.08 16 21 C -0.13 -2.32 10.05 -39.58 -0.40 -2.71 16 22 C -0.12 -2.64 9.67 -39.58 -0.38 -3.03 16 23 C -0.02 -0.38 5.53 -7.54 -0.04 -0.42 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 1.11 7.88 -51.93 -0.41 0.70 16 30 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.10 2.39 6.31 -51.93 -0.33 2.06 16 32 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 33 H 0.12 2.38 5.22 -52.49 -0.27 2.10 16 34 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 35 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 36 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.11 2.40 7.98 -52.49 -0.42 1.98 16 38 H 0.11 2.24 4.90 -51.93 -0.25 1.98 16 39 H 0.06 1.20 7.14 -51.93 -0.37 0.83 16 LS Contribution 314.90 15.07 4.75 4.75 Total: -1.00 -27.20 314.90 -9.61 -36.81 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -5.68 Total: 7.45 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -2.50 Total: -22.31 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: -0.79 Total: -34.64 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.37 Total: -6.91 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.20 -9.61 -36.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383081109.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.196 kcal (2) G-P(sol) polarization free energy of solvation -27.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds