Wall clock time and date at job start Mon Mar 30 2020 06:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.46901 * 2 1 4 4 C 1.42897 * 113.99784 * 180.02562 * 3 2 1 5 5 C 1.53513 * 114.17309 * 150.00062 * 4 3 2 6 6 N 1.47478 * 87.93208 * 87.62095 * 5 4 3 7 7 C 1.46900 * 111.00220 * 138.70441 * 6 5 4 8 8 H 1.09007 * 109.46678 * 57.27237 * 7 6 5 9 9 C 1.50700 * 109.47100 * 297.27208 * 7 6 5 10 10 H 1.08000 * 120.00051 * 294.28685 * 9 7 6 11 11 C 1.37878 * 119.99906 * 114.29341 * 9 7 6 12 12 N 1.31512 * 120.00250 * 354.73006 * 11 9 7 13 13 Si 1.86803 * 119.99889 * 174.73258 * 11 9 7 14 14 H 1.48503 * 109.47099 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.46949 * 119.99830 * 13 11 9 16 16 H 1.48494 * 109.47408 * 239.99691 * 13 11 9 17 17 C 1.50698 * 109.47281 * 177.26830 * 7 6 5 18 18 C 1.38229 * 120.00007 * 47.52386 * 17 7 6 19 19 C 1.38240 * 120.00190 * 179.76693 * 18 17 7 20 20 C 1.38230 * 119.99404 * 0.50090 * 19 18 17 21 21 C 1.38235 * 120.00836 * 359.75211 * 20 19 18 22 22 C 1.38238 * 119.99362 * 359.97438 * 21 20 19 23 23 C 1.47482 * 87.83768 * 27.01467 * 6 5 4 24 24 H 1.08998 * 109.47125 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47169 * 299.99938 * 1 2 3 26 26 H 1.09001 * 109.47345 * 60.00278 * 1 2 3 27 27 H 1.09001 * 109.47169 * 240.00062 * 2 1 3 28 28 H 1.08996 * 109.47570 * 120.00132 * 2 1 3 29 29 H 1.09004 * 113.26244 * 17.04566 * 4 3 2 30 30 H 1.09002 * 113.47608 * 332.85369 * 5 4 3 31 31 H 1.08996 * 113.53447 * 202.39594 * 5 4 3 32 32 H 0.96999 * 120.00513 * 179.97438 * 12 11 9 33 33 H 1.08000 * 120.00045 * 359.97438 * 18 17 7 34 34 H 1.07995 * 120.00201 * 180.23234 * 19 18 17 35 35 H 1.08004 * 119.99801 * 179.72333 * 20 19 18 36 36 H 1.07995 * 120.00660 * 179.97438 * 21 20 19 37 37 H 1.07997 * 119.99962 * 179.97438 * 22 21 20 38 38 H 1.08995 * 113.47724 * 87.75572 * 23 6 5 39 39 H 1.08997 * 113.47375 * 218.22790 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4307 1.4601 -0.0006 5 6 3.9613 2.7190 -0.7009 6 7 3.8280 3.4264 0.5863 7 6 4.9797 4.3063 0.8253 8 1 5.0736 5.0136 0.0012 9 6 6.2343 3.4769 0.9209 10 1 6.3618 2.7830 1.7386 11 6 7.2194 3.6041 -0.0353 12 7 7.0214 4.3707 -1.0855 13 14 8.8352 2.6875 0.1606 14 1 8.8078 1.8994 1.4189 15 1 9.0283 1.7725 -0.9931 16 1 9.9543 3.6623 0.2120 17 6 4.7767 5.0607 2.1139 18 6 4.3763 4.3878 3.2530 19 6 4.1948 5.0790 4.4364 20 6 4.4036 6.4448 4.4779 21 6 4.7989 7.1187 3.3376 22 6 4.9859 6.4266 2.1557 23 6 4.0092 2.1251 1.2564 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.9354 0.5397 -0.2945 30 1 3.2952 3.0982 -1.4758 31 1 4.9929 2.6261 -1.0404 32 1 7.7145 4.4605 -1.7581 33 1 4.2086 3.3214 3.2194 34 1 3.8856 4.5526 5.3273 35 1 4.2574 6.9856 5.4013 36 1 4.9617 8.1858 3.3699 37 1 5.2944 6.9530 1.2646 38 1 5.0536 1.8728 1.4397 39 1 3.3835 2.0010 2.1402 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383081109.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:03 Heat of formation + Delta-G solvation = 6.488258 kcal Electronic energy + Delta-G solvation = -19892.138943 eV Core-core repulsion = 16993.484145 eV Total energy + Delta-G solvation = -2898.654798 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.30349 -39.58628 -37.84904 -34.95564 -33.01147 -31.72995 -31.56130 -29.17802 -27.31044 -26.57617 -24.36859 -23.62614 -23.09957 -21.59405 -20.71498 -18.47014 -17.86435 -17.42447 -16.97287 -16.46829 -16.34278 -15.84432 -15.49134 -15.07425 -14.71571 -14.67559 -14.04666 -13.80458 -13.75833 -13.36429 -13.29896 -13.19096 -12.90897 -12.74431 -12.44550 -12.13256 -12.02784 -11.90024 -11.68775 -11.51499 -11.27502 -11.04602 -10.71880 -10.20209 -9.62652 -9.50816 -9.14470 -8.17060 -6.34648 0.69850 0.76685 1.35776 1.40339 1.49576 2.35229 2.71015 3.01438 3.22794 3.65564 3.74389 4.13683 4.23633 4.25522 4.29116 4.34136 4.43069 4.51692 4.55393 4.64078 4.80381 4.85840 4.87755 4.94658 5.04987 5.06945 5.09962 5.12749 5.27870 5.31565 5.33335 5.49172 5.61545 5.74415 5.76471 5.92429 5.95435 6.25102 6.38571 6.45991 6.58236 6.86197 7.33606 8.83687 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.012600 B = 0.008428 C = 0.005673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.722287 B = 3321.560747 C = 4934.187348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.045 3.955 3 O -0.380 6.380 4 C 0.070 3.930 5 C 0.015 3.985 6 N -0.481 5.481 7 C 0.190 3.810 8 H 0.044 0.956 9 C -0.533 4.533 10 H 0.061 0.939 11 C 0.033 3.967 12 N -0.911 5.911 13 Si 0.947 3.053 14 H -0.265 1.265 15 H -0.276 1.276 16 H -0.284 1.284 17 C -0.046 4.046 18 C -0.133 4.133 19 C -0.126 4.126 20 C -0.144 4.144 21 C -0.123 4.123 22 C -0.150 4.150 23 C -0.012 4.012 24 H 0.095 0.905 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.266 0.734 33 H 0.114 0.886 34 H 0.141 0.859 35 H 0.148 0.852 36 H 0.138 0.862 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.788 -5.590 5.697 10.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 O -0.299 6.299 4 C 0.011 3.989 5 C -0.115 4.115 6 N -0.203 5.203 7 C 0.083 3.917 8 H 0.062 0.938 9 C -0.572 4.572 10 H 0.079 0.921 11 C -0.169 4.169 12 N -0.549 5.549 13 Si 0.773 3.227 14 H -0.189 1.189 15 H -0.202 1.202 16 H -0.210 1.210 17 C -0.047 4.047 18 C -0.151 4.151 19 C -0.143 4.143 20 C -0.162 4.162 21 C -0.140 4.140 22 C -0.169 4.169 23 C -0.141 4.141 24 H 0.114 0.886 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.132 0.868 34 H 0.158 0.842 35 H 0.166 0.834 36 H 0.156 0.844 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.418 -4.906 5.667 10.546 hybrid contribution 2.086 -0.613 -0.625 2.263 sum -5.332 -5.520 5.042 9.182 Atomic orbital electron populations 1.21736 0.92609 1.03384 1.02475 1.22781 0.96551 0.83115 1.00714 1.87934 1.19692 1.27765 1.94508 1.23144 0.81488 0.97154 0.97108 1.23723 0.99970 0.93447 0.94348 1.69212 1.38000 1.08598 1.04501 1.18855 0.88340 0.93228 0.91310 0.93779 1.21506 1.03301 1.22667 1.09742 0.92085 1.25674 1.01113 0.95598 0.94480 1.70030 1.34815 1.39469 1.10599 0.85670 0.79979 0.78613 0.78463 1.18936 1.20190 1.21017 1.20363 0.93802 0.93753 0.96781 1.21166 1.00912 1.00101 0.92906 1.21395 1.00211 0.95128 0.97604 1.21303 1.01659 0.94493 0.98771 1.21297 0.99833 1.00401 0.92513 1.21097 1.02889 0.94327 0.98605 1.24365 1.01206 0.91478 0.97009 0.88636 0.92591 0.92534 0.92601 0.92675 0.89277 0.92672 0.90369 0.92489 0.86815 0.84152 0.83445 0.84407 0.88406 0.88832 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 10.28 71.98 0.74 -2.28 16 2 C 0.04 1.13 6.50 71.98 0.47 1.60 16 3 O -0.38 -13.54 10.39 -148.98 -1.55 -15.09 16 4 C 0.07 2.59 4.66 30.94 0.14 2.73 16 5 C 0.01 0.65 7.42 83.58 0.62 1.27 16 6 N -0.48 -22.53 6.19 -911.75 -5.64 -28.17 16 7 C 0.19 9.63 2.44 43.42 0.11 9.74 16 8 H 0.04 2.58 6.75 -2.38 -0.02 2.56 16 9 C -0.53 -27.53 5.58 25.60 0.14 -27.39 16 10 H 0.06 3.13 6.34 -2.91 -0.02 3.11 16 11 C 0.03 1.73 4.83 84.66 0.41 2.14 16 12 N -0.91 -50.47 12.45 21.45 0.27 -50.20 16 13 Si 0.95 41.50 29.54 68.60 2.03 43.53 16 14 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 15 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 C -0.05 -2.15 4.94 -19.87 -0.10 -2.24 16 18 C -0.13 -5.45 9.17 22.27 0.20 -5.25 16 19 C -0.13 -4.23 10.05 22.27 0.22 -4.01 16 20 C -0.14 -4.51 10.05 22.27 0.22 -4.29 16 21 C -0.12 -4.28 10.05 22.27 0.22 -4.05 16 22 C -0.15 -6.54 9.67 22.27 0.22 -6.32 16 23 C -0.01 -0.47 5.53 83.58 0.46 -0.01 16 24 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.09 2.89 7.88 -2.39 -0.02 2.87 16 30 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.08 3.88 6.31 -2.39 -0.02 3.86 16 32 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 33 H 0.11 4.61 5.22 -2.91 -0.02 4.60 16 34 H 0.14 3.74 8.06 -2.91 -0.02 3.71 16 35 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 36 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 37 H 0.10 4.41 7.98 -2.91 -0.02 4.38 16 38 H 0.09 4.04 4.90 -2.39 -0.01 4.03 16 39 H 0.07 2.66 7.14 -2.39 -0.02 2.64 16 Total: -1.00 -60.91 314.90 0.22 -60.69 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 1.03 Total: 27.59 kcal Atomic # 6 Polarization: -42.44 SS G_CDS: 4.08 Total: -38.36 kcal Atomic # 7 Polarization: -73.00 SS G_CDS: -5.37 Total: -78.37 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -1.55 Total: -15.09 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -60.91 0.22 -60.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383081109.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.182 kcal (2) G-P(sol) polarization free energy of solvation -60.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds