Wall clock time and date at job start Mon Mar 30 2020 06:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00152 * 2 1 4 4 H 1.09002 * 110.34333 * 32.87564 * 3 2 1 5 5 C 1.54342 * 110.30795 * 270.74449 * 3 2 1 6 6 C 1.54341 * 102.37807 * 267.40888 * 5 3 2 7 7 C 1.51381 * 105.16627 * 333.65882 * 6 5 3 8 8 C 1.38549 * 130.35199 * 197.15618 * 7 6 5 9 9 C 1.38135 * 120.32883 * 180.02562 * 8 7 6 10 10 C 1.38158 * 119.99651 * 359.82439 * 9 8 7 11 11 C 1.38611 * 119.87335 * 0.23458 * 10 9 8 12 12 O 1.35900 * 119.94937 * 180.13160 * 11 10 9 13 13 C 1.42905 * 116.99931 * 359.72105 * 12 11 10 14 14 C 1.53000 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47342 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99540 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00157 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99848 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00087 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47151 * 60.00165 * 19 17 15 21 21 H 1.48502 * 109.47224 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46890 * 299.99772 * 19 17 15 23 23 C 1.38115 * 109.76093 * 17.19624 * 7 6 5 24 24 H 1.08994 * 109.47350 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46782 * 299.99756 * 1 2 3 26 26 H 1.08997 * 109.47270 * 59.99408 * 1 2 3 27 27 H 1.00897 * 111.00300 * 123.95673 * 2 1 3 28 28 H 1.08999 * 110.82768 * 149.18655 * 5 3 2 29 29 H 1.09004 * 110.82352 * 25.63240 * 5 3 2 30 30 H 1.09003 * 110.30427 * 214.73603 * 6 5 3 31 31 H 1.09001 * 110.30627 * 92.58567 * 6 5 3 32 32 H 1.07992 * 119.83886 * 0.04914 * 8 7 6 33 33 H 1.07996 * 120.00213 * 179.97438 * 9 8 7 34 34 H 1.08003 * 120.06645 * 180.02562 * 10 9 8 35 35 H 1.08997 * 109.47409 * 299.99911 * 13 12 11 36 36 H 1.08999 * 109.46989 * 60.00211 * 13 12 11 37 37 H 1.09001 * 109.47263 * 300.00356 * 14 13 12 38 38 H 1.09002 * 109.46816 * 59.99737 * 14 13 12 39 39 H 0.96998 * 119.99593 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3299 2.0328 0.5548 5 6 2.1699 1.8782 -1.4474 6 6 3.6363 1.5068 -1.7535 7 6 4.3272 1.4786 -0.4069 8 6 5.6752 1.5173 -0.0892 9 6 6.0823 1.4788 1.2302 10 6 5.1432 1.4049 2.2409 11 6 3.7936 1.3647 1.9278 12 8 2.8685 1.2947 2.9208 13 6 3.3585 1.2600 4.2628 14 6 2.1793 1.1815 5.2345 15 6 2.6961 1.1455 6.6497 16 1 3.7592 1.1761 6.8372 17 6 1.8116 1.0747 7.7049 18 7 0.5169 1.0380 7.4765 19 14 2.4522 1.0294 9.4590 20 1 3.2374 2.2600 9.7312 21 1 1.3076 0.9533 10.4022 22 1 3.3206 -0.1618 9.6382 23 6 3.3848 1.4007 0.5999 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8306 -0.5261 0.7813 28 1 2.0243 2.9572 -1.5004 29 1 1.4896 1.3607 -2.1238 30 1 4.0912 2.2605 -2.3963 31 1 3.6873 0.5255 -2.2255 32 1 6.4113 1.5783 -0.8770 33 1 7.1344 1.5089 1.4718 34 1 5.4603 1.3752 3.2730 35 1 3.9960 0.3858 4.3943 36 1 3.9349 2.1634 4.4625 37 1 1.5414 2.0555 5.1031 38 1 1.6033 0.2780 5.0345 39 1 -0.1053 0.9878 8.2189 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383973344.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:16 Heat of formation + Delta-G solvation = -25.613386 kcal Electronic energy + Delta-G solvation = -19302.558089 eV Core-core repulsion = 16402.511260 eV Total energy + Delta-G solvation = -2900.046829 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.41246 -38.10837 -36.14727 -33.58370 -33.30299 -30.82623 -29.37828 -28.82850 -26.74245 -25.07774 -24.20977 -22.15790 -21.76136 -20.13445 -20.02718 -17.43405 -16.41112 -16.13779 -15.86537 -15.49091 -15.08623 -14.65736 -14.58249 -13.89584 -13.64848 -13.47319 -13.15018 -12.63585 -12.36571 -12.33231 -11.99285 -11.54165 -11.53625 -11.34209 -11.17797 -10.99361 -10.92420 -10.79002 -10.75058 -10.46217 -9.88379 -9.68752 -9.34857 -8.67870 -8.47472 -8.26217 -7.80113 -6.13218 -4.18140 1.44656 1.66584 3.26728 3.31197 3.32845 3.81445 3.86112 4.36879 4.39023 4.62414 4.63477 5.09333 5.15186 5.19983 5.23218 5.35515 5.42857 5.47869 5.64561 5.67856 5.75297 5.82554 5.93592 5.96718 5.99747 6.03271 6.07026 6.12904 6.20287 6.50813 6.59910 6.66977 6.72008 6.99712 7.11075 7.45671 7.46980 7.59392 7.77737 8.01680 8.20431 8.87061 9.46410 10.98278 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024659 B = 0.004620 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.226301 B = 6059.002023 C = 7035.754473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.682 5.682 3 C 0.136 3.864 4 H 0.056 0.944 5 C -0.110 4.110 6 C -0.074 4.074 7 C -0.044 4.044 8 C -0.163 4.163 9 C -0.073 4.073 10 C -0.218 4.218 11 C 0.163 3.837 12 O -0.317 6.317 13 C 0.065 3.935 14 C 0.027 3.973 15 C -0.528 4.528 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.151 4.151 24 H 0.065 0.935 25 H 0.028 0.972 26 H 0.061 0.939 27 H 0.348 0.652 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.872 0.629 -17.099 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.313 5.313 3 C 0.027 3.973 4 H 0.074 0.926 5 C -0.148 4.148 6 C -0.111 4.111 7 C -0.045 4.045 8 C -0.182 4.182 9 C -0.091 4.091 10 C -0.236 4.236 11 C 0.116 3.884 12 O -0.230 6.230 13 C -0.009 4.009 14 C -0.010 4.010 15 C -0.566 4.566 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.528 5.528 19 Si 0.726 3.274 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.152 4.152 24 H 0.084 0.916 25 H 0.046 0.954 26 H 0.080 0.920 27 H 0.166 0.834 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.150 0.850 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.491 0.537 -17.678 18.519 hybrid contribution 0.398 0.225 2.232 2.279 sum 5.889 0.762 -15.446 16.548 Atomic orbital electron populations 1.22242 0.87972 1.01744 1.00434 1.60624 1.07546 1.13022 1.50100 1.20766 0.91666 0.90148 0.94766 0.92617 1.22318 0.96324 1.00182 0.96012 1.20985 0.94461 1.02069 0.93542 1.20379 0.92702 0.96176 0.95260 1.20408 0.94356 1.07187 0.96219 1.20812 0.98947 0.97150 0.92176 1.21251 0.92003 1.09714 1.00676 1.18824 0.88504 0.93303 0.87781 1.86163 1.34047 1.86739 1.16052 1.23333 1.00624 0.99666 0.77283 1.19101 0.91954 0.98673 0.91252 1.20926 0.93170 1.52279 0.90216 0.92417 1.24983 0.94791 0.94844 0.99484 1.69967 1.01319 1.49460 1.32019 0.86543 0.78376 0.78742 0.83695 1.20076 1.21084 1.20066 1.19760 0.96283 1.09044 0.90161 0.91570 0.95386 0.92048 0.83398 0.91168 0.90119 0.91056 0.89835 0.86535 0.85947 0.85019 0.93103 0.93145 0.95546 0.95525 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.55 60.06 0.63 0.95 16 2 N -0.68 -9.53 6.67 -114.15 -0.76 -10.30 16 3 C 0.14 1.95 3.14 -67.84 -0.21 1.74 16 4 H 0.06 0.88 7.82 -51.93 -0.41 0.48 16 5 C -0.11 -1.25 6.76 -25.33 -0.17 -1.42 16 6 C -0.07 -0.81 6.77 -26.85 -0.18 -0.99 16 7 C -0.04 -0.61 6.14 -104.22 -0.64 -1.25 16 8 C -0.16 -2.10 10.04 -39.50 -0.40 -2.49 16 9 C -0.07 -0.97 10.04 -39.65 -0.40 -1.37 16 10 C -0.22 -3.47 9.03 -39.47 -0.36 -3.83 16 11 C 0.16 2.90 6.69 -39.17 -0.26 2.64 16 12 O -0.32 -6.49 10.09 -19.43 -0.20 -6.68 16 13 C 0.06 1.39 4.68 37.16 0.17 1.56 16 14 C 0.03 0.71 5.34 -27.88 -0.15 0.57 16 15 C -0.53 -14.67 9.11 -34.44 -0.31 -14.98 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 19 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C -0.15 -2.40 5.41 -104.07 -0.56 -2.96 16 24 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.03 0.38 8.07 -51.93 -0.42 -0.04 16 26 H 0.06 0.66 8.07 -51.93 -0.42 0.24 16 27 H 0.35 5.33 8.47 -39.29 -0.33 5.00 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.84 8.01 -51.93 -0.42 0.42 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.13 2.05 6.29 -52.48 -0.33 1.72 16 35 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 36 H 0.05 1.04 7.65 -51.93 -0.40 0.64 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 323.12 15.07 4.87 4.87 Total: -1.00 -29.76 323.12 -9.35 -39.11 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.04 Total: 2.66 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -2.93 Total: -20.21 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: -0.02 Total: -35.93 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.20 Total: -6.68 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.76 -9.35 -39.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383973344.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.492 kcal (2) G-P(sol) polarization free energy of solvation -29.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds