Wall clock time and date at job start Mon Mar 30 2020 06:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00152 * 2 1 4 4 H 1.09002 * 110.34333 * 32.87564 * 3 2 1 5 5 C 1.54342 * 110.30795 * 270.74449 * 3 2 1 6 6 C 1.54341 * 102.37807 * 267.40888 * 5 3 2 7 7 C 1.51381 * 105.16627 * 333.65882 * 6 5 3 8 8 C 1.38549 * 130.35199 * 197.15618 * 7 6 5 9 9 C 1.38135 * 120.32883 * 180.02562 * 8 7 6 10 10 C 1.38158 * 119.99651 * 359.82439 * 9 8 7 11 11 C 1.38611 * 119.87335 * 0.23458 * 10 9 8 12 12 O 1.35900 * 119.94937 * 180.13160 * 11 10 9 13 13 C 1.42905 * 116.99931 * 359.72105 * 12 11 10 14 14 C 1.53000 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47342 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99540 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00157 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99848 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00087 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47151 * 60.00165 * 19 17 15 21 21 H 1.48502 * 109.47224 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46890 * 299.99772 * 19 17 15 23 23 C 1.38115 * 109.76093 * 17.19624 * 7 6 5 24 24 H 1.08994 * 109.47350 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46782 * 299.99756 * 1 2 3 26 26 H 1.08997 * 109.47270 * 59.99408 * 1 2 3 27 27 H 1.00897 * 111.00300 * 123.95673 * 2 1 3 28 28 H 1.08999 * 110.82768 * 149.18655 * 5 3 2 29 29 H 1.09004 * 110.82352 * 25.63240 * 5 3 2 30 30 H 1.09003 * 110.30427 * 214.73603 * 6 5 3 31 31 H 1.09001 * 110.30627 * 92.58567 * 6 5 3 32 32 H 1.07992 * 119.83886 * 0.04914 * 8 7 6 33 33 H 1.07996 * 120.00213 * 179.97438 * 9 8 7 34 34 H 1.08003 * 120.06645 * 180.02562 * 10 9 8 35 35 H 1.08997 * 109.47409 * 299.99911 * 13 12 11 36 36 H 1.08999 * 109.46989 * 60.00211 * 13 12 11 37 37 H 1.09001 * 109.47263 * 300.00356 * 14 13 12 38 38 H 1.09002 * 109.46816 * 59.99737 * 14 13 12 39 39 H 0.96998 * 119.99593 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3299 2.0328 0.5548 5 6 2.1699 1.8782 -1.4474 6 6 3.6363 1.5068 -1.7535 7 6 4.3272 1.4786 -0.4069 8 6 5.6752 1.5173 -0.0892 9 6 6.0823 1.4788 1.2302 10 6 5.1432 1.4049 2.2409 11 6 3.7936 1.3647 1.9278 12 8 2.8685 1.2947 2.9208 13 6 3.3585 1.2600 4.2628 14 6 2.1793 1.1815 5.2345 15 6 2.6961 1.1455 6.6497 16 1 3.7592 1.1761 6.8372 17 6 1.8116 1.0747 7.7049 18 7 0.5169 1.0380 7.4765 19 14 2.4522 1.0294 9.4590 20 1 3.2374 2.2600 9.7312 21 1 1.3076 0.9533 10.4022 22 1 3.3206 -0.1618 9.6382 23 6 3.3848 1.4007 0.5999 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8306 -0.5261 0.7813 28 1 2.0243 2.9572 -1.5004 29 1 1.4896 1.3607 -2.1238 30 1 4.0912 2.2605 -2.3963 31 1 3.6873 0.5255 -2.2255 32 1 6.4113 1.5783 -0.8770 33 1 7.1344 1.5089 1.4718 34 1 5.4603 1.3752 3.2730 35 1 3.9960 0.3858 4.3943 36 1 3.9349 2.1634 4.4625 37 1 1.5414 2.0555 5.1031 38 1 1.6033 0.2780 5.0345 39 1 -0.1053 0.9878 8.2189 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383973344.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:15 Heat of formation + Delta-G solvation = -43.714772 kcal Electronic energy + Delta-G solvation = -19303.343024 eV Core-core repulsion = 16402.511260 eV Total energy + Delta-G solvation = -2900.831764 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.59383 -39.47943 -37.28295 -35.52928 -34.49848 -32.59567 -30.79694 -29.91220 -27.80572 -27.01049 -25.27846 -23.64425 -23.15245 -21.41624 -21.23453 -19.00546 -18.06694 -17.34201 -17.25648 -17.00245 -16.53685 -16.27494 -15.75948 -15.09556 -14.69069 -14.58250 -14.41520 -14.30702 -14.20350 -13.55420 -13.14920 -13.12953 -12.89569 -12.64005 -12.56591 -12.45841 -12.16980 -12.10339 -11.87990 -11.86334 -11.58133 -11.54955 -11.43199 -10.64698 -9.79460 -9.38983 -9.05514 -8.29671 -6.43941 0.33213 0.49642 1.38869 1.42843 1.50908 2.24872 2.49394 2.73475 3.04718 3.30403 3.53264 3.61909 4.02662 4.05636 4.19331 4.21510 4.25662 4.36826 4.43703 4.49041 4.58563 4.64432 4.68241 4.76270 4.84962 4.95583 5.02184 5.11689 5.13789 5.26580 5.28005 5.41143 5.43676 5.51284 5.61055 5.66309 5.92350 6.01132 6.04575 6.24931 6.52191 6.70287 7.26542 8.83206 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024659 B = 0.004620 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.226301 B = 6059.002023 C = 7035.754473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.679 5.679 3 C 0.129 3.871 4 H 0.028 0.972 5 C -0.103 4.103 6 C -0.068 4.068 7 C -0.047 4.047 8 C -0.154 4.154 9 C -0.071 4.071 10 C -0.231 4.231 11 C 0.124 3.876 12 O -0.341 6.341 13 C 0.086 3.914 14 C 0.032 3.968 15 C -0.548 4.548 16 H 0.070 0.930 17 C 0.003 3.997 18 N -0.931 5.931 19 Si 0.976 3.024 20 H -0.264 1.264 21 H -0.282 1.282 22 H -0.263 1.263 23 C -0.170 4.170 24 H 0.078 0.922 25 H 0.005 0.995 26 H 0.080 0.920 27 H 0.335 0.665 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.128 0.872 35 H 0.059 0.941 36 H 0.057 0.943 37 H -0.005 1.005 38 H -0.003 1.003 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.230 0.750 -18.580 20.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.308 5.308 3 C 0.020 3.980 4 H 0.046 0.954 5 C -0.141 4.141 6 C -0.104 4.104 7 C -0.048 4.048 8 C -0.172 4.172 9 C -0.089 4.089 10 C -0.250 4.250 11 C 0.078 3.922 12 O -0.255 6.255 13 C 0.011 3.989 14 C -0.005 4.005 15 C -0.586 4.586 16 H 0.088 0.912 17 C -0.195 4.195 18 N -0.570 5.570 19 Si 0.799 3.201 20 H -0.188 1.188 21 H -0.207 1.207 22 H -0.188 1.188 23 C -0.171 4.171 24 H 0.097 0.903 25 H 0.024 0.976 26 H 0.099 0.901 27 H 0.151 0.849 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.171 0.829 33 H 0.172 0.828 34 H 0.146 0.854 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.013 0.987 38 H 0.015 0.985 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.864 0.665 -19.193 20.752 hybrid contribution -0.332 0.193 2.560 2.589 sum 7.531 0.858 -16.633 18.279 Atomic orbital electron populations 1.22302 0.87167 1.02535 1.00282 1.60757 1.08264 1.12699 1.49101 1.20917 0.90687 0.89797 0.96604 0.95428 1.22327 0.97293 1.00827 0.93658 1.21045 0.93555 1.03483 0.92332 1.20842 0.92948 0.95018 0.95942 1.20871 0.94701 1.04719 0.96885 1.21202 1.00008 0.95761 0.91881 1.21390 0.91771 1.10365 1.01476 1.19214 0.89001 0.96244 0.87732 1.86082 1.35496 1.88027 1.15906 1.22838 0.98161 1.00304 0.77566 1.18920 0.93023 0.95689 0.92852 1.21357 0.93962 1.52275 0.91010 0.91154 1.26039 0.94877 0.94021 1.04606 1.70118 1.02880 1.50335 1.33636 0.85336 0.77934 0.79451 0.77350 1.18825 1.20685 1.18789 1.20079 0.97699 1.09321 0.89966 0.90324 0.97615 0.90091 0.84850 0.90198 0.88858 0.88209 0.88896 0.82892 0.82754 0.85370 0.92269 0.92453 0.98708 0.98498 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.55 127.69 1.35 2.02 16 2 N -0.68 -19.30 6.67 -515.05 -3.43 -22.74 16 3 C 0.13 3.76 3.14 44.83 0.14 3.90 16 4 H 0.03 0.94 7.82 -2.39 -0.02 0.92 16 5 C -0.10 -2.14 6.76 31.50 0.21 -1.92 16 6 C -0.07 -1.25 6.77 30.52 0.21 -1.05 16 7 C -0.05 -1.17 6.14 -19.60 -0.12 -1.29 16 8 C -0.15 -3.40 10.04 22.32 0.22 -3.18 16 9 C -0.07 -1.71 10.04 22.23 0.22 -1.48 16 10 C -0.23 -7.30 9.03 22.34 0.20 -7.10 16 11 C 0.12 4.53 6.69 22.54 0.15 4.68 16 12 O -0.34 -14.86 10.09 -92.42 -0.93 -15.80 16 13 C 0.09 3.85 4.68 71.98 0.34 4.18 16 14 C 0.03 1.80 5.34 29.85 0.16 1.96 16 15 C -0.55 -31.27 9.11 25.60 0.23 -31.04 16 16 H 0.07 3.74 7.74 -2.91 -0.02 3.71 16 17 C 0.00 0.19 5.46 84.65 0.46 0.65 16 18 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 19 Si 0.98 43.64 29.54 68.60 2.03 45.66 16 20 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 23 C -0.17 -5.37 5.41 -19.50 -0.11 -5.48 16 24 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.01 0.15 8.07 -2.39 -0.02 0.13 16 26 H 0.08 1.70 8.07 -2.39 -0.02 1.68 16 27 H 0.33 10.81 8.47 -89.70 -0.76 10.05 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.09 1.70 8.01 -2.38 -0.02 1.68 16 30 H 0.10 1.34 8.14 -2.39 -0.02 1.33 16 31 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 33 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 34 H 0.13 4.01 6.29 -2.91 -0.02 3.99 16 35 H 0.06 2.51 7.66 -2.39 -0.02 2.49 16 36 H 0.06 2.45 7.65 -2.39 -0.02 2.43 16 37 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 38 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -67.13 323.12 1.89 -65.24 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.27 Total: 19.46 kcal Atomic # 6 Polarization: -38.82 SS G_CDS: 3.67 Total: -35.15 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -3.15 Total: -79.43 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.93 Total: -15.80 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -67.13 1.89 -65.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383973344.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.529 kcal (2) G-P(sol) polarization free energy of solvation -67.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds