Wall clock time and date at job start Mon Mar 30 2020 06:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 110.99900 * 2 1 4 4 H 1.08998 * 110.26798 * 324.37828 * 3 2 1 5 5 C 1.54348 * 110.30271 * 86.45267 * 3 2 1 6 6 C 1.54347 * 102.37894 * 145.35055 * 5 3 2 7 7 C 1.51383 * 105.16778 * 333.66993 * 6 5 3 8 8 C 1.38546 * 130.36032 * 197.16625 * 7 6 5 9 9 C 1.38132 * 120.33787 * 180.02562 * 8 7 6 10 10 C 1.38166 * 119.99369 * 359.97438 * 9 8 7 11 11 C 1.38601 * 119.87133 * 0.02562 * 10 9 8 12 12 O 1.35899 * 119.94806 * 179.97438 * 11 10 9 13 13 C 1.42895 * 117.00006 * 0.02562 * 12 11 10 14 14 C 1.52999 * 109.46973 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47070 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00049 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00097 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99554 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00149 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46741 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47127 * 119.99722 * 19 17 15 22 22 H 1.48493 * 109.46850 * 239.99621 * 19 17 15 23 23 C 1.38116 * 109.76202 * 17.17974 * 7 6 5 24 24 H 1.08997 * 109.47550 * 59.99884 * 1 2 3 25 25 H 1.09006 * 109.47194 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47449 * 299.99953 * 1 2 3 27 27 H 1.00899 * 111.00311 * 236.04916 * 2 1 3 28 28 H 1.09004 * 110.82436 * 27.12930 * 5 3 2 29 29 H 1.09004 * 110.99788 * 263.64625 * 5 3 2 30 30 H 1.08997 * 110.30742 * 92.59128 * 6 5 3 31 31 H 1.09003 * 110.30761 * 214.74800 * 6 5 3 32 32 H 1.08002 * 119.83298 * 0.02562 * 8 7 6 33 33 H 1.07996 * 119.99878 * 180.02562 * 9 8 7 34 34 H 1.08001 * 120.06111 * 179.97438 * 10 9 8 35 35 H 1.08990 * 109.47350 * 299.99949 * 13 12 11 36 36 H 1.09005 * 109.46908 * 60.00616 * 13 12 11 37 37 H 1.08998 * 109.47620 * 300.00434 * 14 13 12 38 38 H 1.08998 * 109.46972 * 60.00159 * 14 13 12 39 39 H 0.97006 * 119.99150 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3547 2.0218 -0.5955 5 6 2.1037 1.9035 1.4448 6 6 3.3673 2.7874 1.3781 7 6 4.1983 2.2062 0.2541 8 6 5.5389 2.3766 -0.0512 9 6 6.0924 1.7375 -1.1436 10 6 5.3082 0.9230 -1.9377 11 6 3.9666 0.7495 -1.6361 12 8 3.1938 -0.0509 -2.4165 13 6 3.8302 -0.6815 -3.5297 14 6 2.8095 -1.5362 -4.2836 15 6 3.4808 -2.2019 -5.4573 16 1 4.5303 -2.0319 -5.6467 17 6 2.7548 -3.0270 -6.2898 18 7 1.4765 -3.2335 -6.0594 19 14 3.5867 -3.8515 -7.7450 20 1 5.0183 -3.4588 -7.7844 21 1 3.4811 -5.3261 -7.6053 22 1 2.9219 -3.4246 -9.0023 23 6 3.4104 1.3932 -0.5370 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8306 -0.5261 -0.7814 28 1 2.2409 1.0840 2.1503 29 1 1.2288 2.4977 1.7089 30 1 3.0960 3.8189 1.1534 31 1 3.9150 2.7360 2.3191 32 1 6.1544 3.0124 0.5680 33 1 7.1381 1.8739 -1.3763 34 1 5.7398 0.4231 -2.7923 35 1 4.2314 0.0800 -4.1982 36 1 4.6417 -1.3158 -3.1728 37 1 2.4085 -2.2979 -3.6149 38 1 1.9977 -0.9024 -4.6405 39 1 0.9657 -3.8137 -6.6454 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383973348.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:18 Heat of formation + Delta-G solvation = -26.650189 kcal Electronic energy + Delta-G solvation = -19384.953933 eV Core-core repulsion = 16484.862145 eV Total energy + Delta-G solvation = -2900.091789 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.43122 -38.05264 -36.15834 -33.67623 -33.30496 -30.80644 -29.37194 -28.84937 -26.74237 -25.05515 -23.91651 -22.26216 -21.80492 -20.19351 -20.02772 -17.46750 -16.29869 -15.88527 -15.81438 -15.71545 -15.25705 -14.59267 -14.56101 -13.85995 -13.57425 -13.51588 -13.09677 -12.69117 -12.35278 -12.32486 -11.99079 -11.77770 -11.48255 -11.36462 -11.09076 -11.02949 -10.92944 -10.76887 -10.70224 -10.43503 -9.88530 -9.68476 -9.31678 -8.65581 -8.47672 -8.18133 -7.79145 -6.13196 -4.17705 1.44728 1.66050 3.24874 3.32094 3.35551 3.75121 3.88118 4.38233 4.48951 4.58278 4.62540 5.06035 5.15104 5.23632 5.24406 5.29302 5.41422 5.53012 5.59426 5.66963 5.73379 5.81140 5.88516 5.96601 6.00566 6.05894 6.11053 6.12831 6.23849 6.49689 6.58488 6.64438 6.70973 6.98911 7.22056 7.46644 7.59863 7.66646 7.78055 8.01550 8.20857 8.87892 9.46944 10.98358 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024871 B = 0.004761 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.548314 B = 5880.042392 C = 6933.052593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.689 5.689 3 C 0.136 3.864 4 H 0.055 0.945 5 C -0.109 4.109 6 C -0.079 4.079 7 C -0.055 4.055 8 C -0.159 4.159 9 C -0.077 4.077 10 C -0.214 4.214 11 C 0.162 3.838 12 O -0.320 6.320 13 C 0.066 3.934 14 C 0.026 3.974 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.889 5.889 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.143 4.143 24 H 0.022 0.978 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.360 0.640 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.133 0.867 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.028 0.972 38 H 0.026 0.974 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.564 11.368 13.591 18.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.322 5.322 3 C 0.027 3.973 4 H 0.072 0.928 5 C -0.147 4.147 6 C -0.117 4.117 7 C -0.056 4.056 8 C -0.177 4.177 9 C -0.095 4.095 10 C -0.232 4.232 11 C 0.115 3.885 12 O -0.233 6.233 13 C -0.008 4.008 14 C -0.011 4.011 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.527 5.527 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.144 4.144 24 H 0.041 0.959 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.182 0.818 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.150 0.850 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.046 0.954 38 H 0.044 0.956 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.229 11.119 14.189 18.314 hybrid contribution 0.484 -0.271 -2.013 2.089 sum 3.713 10.849 12.176 16.725 Atomic orbital electron populations 1.22207 0.88243 1.01930 0.99830 1.60648 1.07461 1.12758 1.51375 1.20870 0.90948 0.90436 0.95075 0.92768 1.22387 0.96776 0.98945 0.96638 1.21045 0.95082 0.99114 0.96438 1.20282 0.93228 0.96097 0.95992 1.20396 0.93988 1.03814 0.99534 1.20803 0.99237 0.95407 0.94036 1.21257 0.93359 1.04997 1.03614 1.18751 0.89828 0.90165 0.89806 1.86056 1.38934 1.58166 1.40139 1.23340 0.98311 0.95020 0.84153 1.19121 0.93805 0.94017 0.94152 1.21001 0.96267 1.28442 1.10725 0.92320 1.24985 0.94844 0.96362 0.97946 1.69987 1.06999 1.37419 1.38316 0.86436 0.79610 0.79239 0.82144 1.19631 1.20800 1.20849 1.19813 0.96633 1.01920 0.96031 0.95913 0.91407 0.92257 0.81825 0.89818 0.91169 0.90289 0.90594 0.86509 0.85919 0.84958 0.93155 0.93003 0.95367 0.95561 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.54 60.06 0.63 1.01 16 2 N -0.69 -10.82 6.66 -114.14 -0.76 -11.58 16 3 C 0.14 1.99 3.15 -67.83 -0.21 1.78 16 4 H 0.05 0.81 7.86 -51.93 -0.41 0.40 16 5 C -0.11 -1.25 6.68 -25.32 -0.17 -1.42 16 6 C -0.08 -0.84 6.77 -26.84 -0.18 -1.02 16 7 C -0.06 -0.76 6.14 -104.22 -0.64 -1.40 16 8 C -0.16 -2.03 10.04 -39.51 -0.40 -2.43 16 9 C -0.08 -1.03 10.04 -39.65 -0.40 -1.43 16 10 C -0.21 -3.40 9.03 -39.47 -0.36 -3.76 16 11 C 0.16 2.87 6.57 -39.17 -0.26 2.61 16 12 O -0.32 -6.41 8.20 -19.42 -0.16 -6.57 16 13 C 0.07 1.39 4.68 37.16 0.17 1.56 16 14 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16 15 C -0.53 -14.54 9.11 -34.44 -0.31 -14.85 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 19 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.14 -2.29 5.75 -104.06 -0.60 -2.89 16 24 H 0.02 0.31 8.07 -51.93 -0.42 -0.11 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 27 H 0.36 6.49 6.44 -39.29 -0.25 6.24 16 28 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.13 2.05 6.29 -52.49 -0.33 1.72 16 35 H 0.05 1.02 7.65 -51.93 -0.40 0.62 16 36 H 0.05 1.05 7.66 -51.93 -0.40 0.65 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 319.48 15.07 4.81 4.81 Total: -1.00 -29.67 319.48 -9.32 -38.99 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -5.97 Total: 3.79 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -2.96 Total: -20.10 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: -0.02 Total: -37.08 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.16 Total: -6.57 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.67 -9.32 -38.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383973348.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.342 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds