Wall clock time and date at job start Mon Mar 30 2020 06:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 110.99900 * 2 1 4 4 H 1.08998 * 110.26798 * 324.37828 * 3 2 1 5 5 C 1.54348 * 110.30271 * 86.45267 * 3 2 1 6 6 C 1.54347 * 102.37894 * 145.35055 * 5 3 2 7 7 C 1.51383 * 105.16778 * 333.66993 * 6 5 3 8 8 C 1.38546 * 130.36032 * 197.16625 * 7 6 5 9 9 C 1.38132 * 120.33787 * 180.02562 * 8 7 6 10 10 C 1.38166 * 119.99369 * 359.97438 * 9 8 7 11 11 C 1.38601 * 119.87133 * 0.02562 * 10 9 8 12 12 O 1.35899 * 119.94806 * 179.97438 * 11 10 9 13 13 C 1.42895 * 117.00006 * 0.02562 * 12 11 10 14 14 C 1.52999 * 109.46973 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47070 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00049 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00097 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99554 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00149 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46741 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47127 * 119.99722 * 19 17 15 22 22 H 1.48493 * 109.46850 * 239.99621 * 19 17 15 23 23 C 1.38116 * 109.76202 * 17.17974 * 7 6 5 24 24 H 1.08997 * 109.47550 * 59.99884 * 1 2 3 25 25 H 1.09006 * 109.47194 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47449 * 299.99953 * 1 2 3 27 27 H 1.00899 * 111.00311 * 236.04916 * 2 1 3 28 28 H 1.09004 * 110.82436 * 27.12930 * 5 3 2 29 29 H 1.09004 * 110.99788 * 263.64625 * 5 3 2 30 30 H 1.08997 * 110.30742 * 92.59128 * 6 5 3 31 31 H 1.09003 * 110.30761 * 214.74800 * 6 5 3 32 32 H 1.08002 * 119.83298 * 0.02562 * 8 7 6 33 33 H 1.07996 * 119.99878 * 180.02562 * 9 8 7 34 34 H 1.08001 * 120.06111 * 179.97438 * 10 9 8 35 35 H 1.08990 * 109.47350 * 299.99949 * 13 12 11 36 36 H 1.09005 * 109.46908 * 60.00616 * 13 12 11 37 37 H 1.08998 * 109.47620 * 300.00434 * 14 13 12 38 38 H 1.08998 * 109.46972 * 60.00159 * 14 13 12 39 39 H 0.97006 * 119.99150 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3547 2.0218 -0.5955 5 6 2.1037 1.9035 1.4448 6 6 3.3673 2.7874 1.3781 7 6 4.1983 2.2062 0.2541 8 6 5.5389 2.3766 -0.0512 9 6 6.0924 1.7375 -1.1436 10 6 5.3082 0.9230 -1.9377 11 6 3.9666 0.7495 -1.6361 12 8 3.1938 -0.0509 -2.4165 13 6 3.8302 -0.6815 -3.5297 14 6 2.8095 -1.5362 -4.2836 15 6 3.4808 -2.2019 -5.4573 16 1 4.5303 -2.0319 -5.6467 17 6 2.7548 -3.0270 -6.2898 18 7 1.4765 -3.2335 -6.0594 19 14 3.5867 -3.8515 -7.7450 20 1 5.0183 -3.4588 -7.7844 21 1 3.4811 -5.3261 -7.6053 22 1 2.9219 -3.4246 -9.0023 23 6 3.4104 1.3932 -0.5370 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8306 -0.5261 -0.7814 28 1 2.2409 1.0840 2.1503 29 1 1.2288 2.4977 1.7089 30 1 3.0960 3.8189 1.1534 31 1 3.9150 2.7360 2.3191 32 1 6.1544 3.0124 0.5680 33 1 7.1381 1.8739 -1.3763 34 1 5.7398 0.4231 -2.7923 35 1 4.2314 0.0800 -4.1982 36 1 4.6417 -1.3158 -3.1728 37 1 2.4085 -2.2979 -3.6149 38 1 1.9977 -0.9024 -4.6405 39 1 0.9657 -3.8137 -6.6454 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383973348.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:17 Heat of formation + Delta-G solvation = -44.357271 kcal Electronic energy + Delta-G solvation = -19385.721770 eV Core-core repulsion = 16484.862145 eV Total energy + Delta-G solvation = -2900.859625 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.60284 -39.40455 -37.29638 -35.52784 -34.61526 -32.56267 -30.77202 -29.92636 -27.81695 -26.98939 -24.99929 -23.71986 -23.18530 -21.41899 -21.29741 -19.01098 -18.06812 -17.18258 -17.07733 -16.97515 -16.63317 -16.49673 -15.68125 -15.04929 -14.71688 -14.57953 -14.36018 -14.30319 -14.24544 -13.49069 -13.18947 -13.08475 -12.99794 -12.75385 -12.53544 -12.49226 -12.16964 -12.05103 -11.92996 -11.77657 -11.55775 -11.50567 -11.37783 -10.64532 -9.79278 -9.33535 -9.03322 -8.28699 -6.42159 0.33981 0.50568 1.39649 1.40331 1.53807 2.23586 2.47767 2.75531 3.06073 3.41107 3.50137 3.59039 4.04619 4.06348 4.19540 4.24394 4.27182 4.33487 4.44336 4.46451 4.56241 4.62442 4.70793 4.73147 4.84774 4.95124 5.00258 5.09828 5.13021 5.30518 5.32984 5.42020 5.44656 5.50768 5.59913 5.67291 5.92559 6.05945 6.10063 6.30679 6.53747 6.72484 7.28140 8.84468 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024871 B = 0.004761 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.548314 B = 5880.042392 C = 6933.052593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.698 5.698 3 C 0.128 3.872 4 H 0.044 0.956 5 C -0.101 4.101 6 C -0.073 4.073 7 C -0.057 4.057 8 C -0.151 4.151 9 C -0.075 4.075 10 C -0.229 4.229 11 C 0.123 3.877 12 O -0.338 6.338 13 C 0.086 3.914 14 C 0.032 3.968 15 C -0.546 4.546 16 H 0.069 0.931 17 C 0.003 3.997 18 N -0.930 5.930 19 Si 0.975 3.025 20 H -0.258 1.258 21 H -0.276 1.276 22 H -0.277 1.277 23 C -0.166 4.166 24 H 0.012 0.988 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.341 0.659 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.129 0.871 35 H 0.057 0.943 36 H 0.058 0.942 37 H -0.001 1.001 38 H -0.004 1.004 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.492 12.885 14.828 20.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.330 5.330 3 C 0.019 3.981 4 H 0.062 0.938 5 C -0.139 4.139 6 C -0.110 4.110 7 C -0.058 4.058 8 C -0.169 4.169 9 C -0.093 4.093 10 C -0.248 4.248 11 C 0.077 3.923 12 O -0.253 6.253 13 C 0.012 3.988 14 C -0.005 4.005 15 C -0.584 4.584 16 H 0.087 0.913 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.798 3.202 20 H -0.182 1.182 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.167 4.167 24 H 0.031 0.969 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.160 0.840 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.172 0.828 33 H 0.172 0.828 34 H 0.147 0.853 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.018 0.982 38 H 0.014 0.986 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.164 12.664 15.458 20.639 hybrid contribution -0.124 -0.661 -2.293 2.390 sum 5.041 12.003 13.165 18.515 Atomic orbital electron populations 1.22269 0.87245 1.02152 1.00501 1.60771 1.08499 1.13495 1.50227 1.21085 0.90215 0.89611 0.97194 0.93778 1.22377 0.98492 0.99157 0.93906 1.21130 0.94062 0.99537 0.96279 1.20795 0.93738 0.95078 0.96196 1.20863 0.93936 1.02974 0.99107 1.21197 1.00472 0.94131 0.93510 1.21401 0.92996 1.06058 1.04344 1.19144 0.90810 0.91504 0.90815 1.85991 1.39699 1.59347 1.40216 1.22838 0.96539 0.94737 0.84715 1.18926 0.94083 0.93461 0.94034 1.21417 0.96914 1.28726 1.11313 0.91267 1.26013 0.95425 0.96940 1.01142 1.70126 1.08753 1.38256 1.39767 0.85253 0.78996 0.77995 0.77923 1.18192 1.20188 1.20238 1.20180 0.97888 1.02566 0.96064 0.96937 0.91501 0.89753 0.84004 0.90323 0.88881 0.88222 0.88099 0.82829 0.82809 0.85334 0.92518 0.92355 0.98219 0.98575 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.54 127.69 1.35 2.11 16 2 N -0.70 -22.68 6.66 -515.02 -3.43 -26.12 16 3 C 0.13 3.74 3.15 44.84 0.14 3.88 16 4 H 0.04 1.34 7.86 -2.39 -0.02 1.32 16 5 C -0.10 -2.08 6.68 31.51 0.21 -1.87 16 6 C -0.07 -1.28 6.77 30.52 0.21 -1.07 16 7 C -0.06 -1.43 6.14 -19.60 -0.12 -1.55 16 8 C -0.15 -3.32 10.04 22.32 0.22 -3.10 16 9 C -0.08 -1.83 10.04 22.23 0.22 -1.61 16 10 C -0.23 -7.26 9.03 22.34 0.20 -7.06 16 11 C 0.12 4.48 6.57 22.54 0.15 4.63 16 12 O -0.34 -14.41 8.20 -92.42 -0.76 -15.17 16 13 C 0.09 3.82 4.68 71.98 0.34 4.16 16 14 C 0.03 1.76 5.34 29.85 0.16 1.92 16 15 C -0.55 -30.97 9.11 25.60 0.23 -30.74 16 16 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 17 C 0.00 0.20 5.46 84.66 0.46 0.66 16 18 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 19 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 20 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 23 C -0.17 -5.29 5.75 -19.50 -0.11 -5.40 16 24 H 0.01 0.35 8.07 -2.39 -0.02 0.33 16 25 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 26 H 0.08 1.87 8.11 -2.39 -0.02 1.85 16 27 H 0.34 13.18 6.44 -89.69 -0.58 12.60 16 28 H 0.08 1.71 8.09 -2.39 -0.02 1.69 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 33 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 34 H 0.13 4.02 6.29 -2.91 -0.02 4.00 16 35 H 0.06 2.39 7.65 -2.39 -0.02 2.37 16 36 H 0.06 2.46 7.66 -2.38 -0.02 2.44 16 37 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 38 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 39 H 0.27 15.12 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -66.94 319.48 2.24 -64.70 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.46 Total: 22.27 kcal Atomic # 6 Polarization: -38.70 SS G_CDS: 3.66 Total: -35.04 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -3.15 Total: -82.45 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.76 Total: -15.17 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -66.94 2.24 -64.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383973348.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.341 kcal (2) G-P(sol) polarization free energy of solvation -66.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds