Wall clock time and date at job start Mon Mar 30 2020 06:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47844 * 111.00256 * 2 1 4 4 C 1.54906 * 104.79740 * 213.63772 * 3 2 1 5 5 C 1.55147 * 101.64861 * 37.07040 * 4 3 2 6 6 C 1.47440 * 110.99726 * 239.15929 * 2 1 3 7 7 H 1.09001 * 109.88814 * 242.66855 * 6 2 1 8 8 C 1.53002 * 109.88791 * 3.85123 * 6 2 1 9 9 O 1.42902 * 109.47145 * 294.76937 * 8 6 2 10 10 C 1.35677 * 116.99846 * 180.02562 * 9 8 6 11 11 C 1.39314 * 119.82015 * 359.72172 * 10 9 8 12 12 C 1.36432 * 120.18380 * 179.76339 * 11 10 9 13 13 C 1.40831 * 119.81392 * 0.51061 * 12 11 10 14 14 C 1.41217 * 120.17955 * 179.71989 * 13 12 11 15 15 H 1.07996 * 120.00032 * 24.94046 * 14 13 12 16 16 C 1.39888 * 120.00004 * 204.94831 * 14 13 12 17 17 N 1.30882 * 120.00271 * 17.21369 * 16 14 13 18 18 Si 1.86799 * 119.99982 * 197.21390 * 16 14 13 19 19 H 1.48508 * 109.47137 * 59.99824 * 18 16 14 20 20 H 1.48502 * 109.47043 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47142 * 299.99799 * 18 16 14 22 22 C 1.40832 * 119.64226 * 359.74608 * 13 12 11 23 23 C 1.36436 * 119.81126 * 359.97438 * 22 13 12 24 24 H 1.08999 * 109.47361 * 65.80401 * 1 2 3 25 25 H 1.08995 * 109.47777 * 185.80912 * 1 2 3 26 26 H 1.09000 * 109.46903 * 305.80440 * 1 2 3 27 27 H 1.09003 * 110.37386 * 332.47074 * 3 2 1 28 28 H 1.09000 * 110.37191 * 94.80601 * 3 2 1 29 29 H 1.09002 * 110.99004 * 155.16066 * 4 3 2 30 30 H 1.08996 * 110.98771 * 278.98134 * 4 3 2 31 31 H 1.09005 * 110.70022 * 205.96345 * 5 4 3 32 32 H 1.08998 * 110.85141 * 82.80495 * 5 4 3 33 33 H 1.08995 * 109.47341 * 54.77023 * 8 6 2 34 34 H 1.09003 * 109.47191 * 174.76820 * 8 6 2 35 35 H 1.08007 * 119.90210 * 0.02562 * 11 10 9 36 36 H 1.08006 * 120.08944 * 180.25443 * 12 11 10 37 37 H 0.96996 * 120.00449 * 180.02562 * 17 16 14 38 38 H 1.07993 * 120.09450 * 180.02562 * 22 13 12 39 39 H 1.08002 * 119.91284 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3048 1.3027 -0.8296 5 6 2.9157 0.2821 -1.9315 6 6 1.9973 -0.7057 -1.1819 7 1 2.5696 -1.5785 -0.8675 8 6 0.8436 -1.1355 -2.0903 9 8 0.0387 -2.1025 -1.4127 10 6 -1.0341 -2.5907 -2.0848 11 6 -1.3079 -2.1393 -3.3740 12 6 -2.3819 -2.6287 -4.0585 13 6 -3.2208 -3.5849 -3.4541 14 6 -4.3379 -4.0923 -4.1533 15 1 -4.3471 -4.0869 -5.2332 16 6 -5.4327 -4.6017 -3.4470 17 7 -5.5853 -4.3138 -2.1794 18 14 -6.6770 -5.6931 -4.3132 19 1 -5.9939 -6.9029 -4.8377 20 1 -7.7332 -6.0993 -3.3515 21 1 -7.2927 -4.9451 -5.4386 22 6 -2.9400 -4.0319 -2.1484 23 6 -1.8588 -3.5366 -1.4798 24 1 -0.3634 0.4212 -0.9374 25 1 -0.3634 -1.0223 0.1040 26 1 -0.3633 0.6012 0.8335 27 1 1.2890 2.0593 -0.4723 28 1 2.2148 1.7038 1.0182 29 1 3.5495 2.2720 -1.2640 30 1 4.1302 0.9280 -0.2243 31 1 3.8000 -0.2280 -2.3138 32 1 2.3752 0.7725 -2.7411 33 1 0.2347 -0.2667 -2.3400 34 1 1.2447 -1.5730 -3.0045 35 1 -0.6658 -1.4030 -3.8345 36 1 -2.5904 -2.2807 -5.0594 37 1 -6.3442 -4.6673 -1.6896 38 1 -3.5783 -4.7652 -1.6781 39 1 -1.6421 -3.8780 -0.4783 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386644498.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:14 Heat of formation + Delta-G solvation = -8.309186 kcal Electronic energy + Delta-G solvation = -19417.928409 eV Core-core repulsion = 16518.631946 eV Total energy + Delta-G solvation = -2899.296463 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.85065 -38.22047 -36.23512 -33.34238 -31.97851 -30.73603 -29.55580 -28.91018 -25.52471 -25.34657 -24.45390 -21.37630 -21.17476 -20.53986 -19.42613 -17.31749 -17.02895 -16.63163 -15.71868 -15.18509 -14.85771 -14.53113 -13.98231 -13.66779 -13.08007 -12.98392 -12.93051 -12.58692 -12.20180 -12.02193 -11.84271 -11.55185 -11.34540 -11.30897 -11.10658 -11.01571 -10.97047 -10.83528 -10.66683 -10.55125 -9.89909 -9.72317 -9.33735 -9.00586 -8.16502 -7.63887 -7.00981 -6.71362 -4.25359 2.79395 2.95663 3.08143 3.10626 3.22548 3.87569 3.95685 4.21451 4.54904 4.62040 4.62733 4.95153 5.19274 5.31017 5.39481 5.47809 5.62099 5.63815 5.67635 5.71114 5.76549 5.82982 5.84900 6.04331 6.07703 6.21539 6.29319 6.56356 6.72766 6.98004 7.09743 7.13082 7.16495 7.20184 7.47361 7.56260 7.80392 8.00737 8.21070 8.45458 8.65681 8.90426 8.99192 10.23052 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.053928 B = 0.003878 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.088459 B = 7218.178769 C = 7447.393335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.523 5.523 3 C 0.036 3.964 4 C -0.127 4.127 5 C -0.136 4.136 6 C 0.075 3.925 7 H 0.093 0.907 8 C 0.052 3.948 9 O -0.317 6.317 10 C -0.010 4.010 11 C -0.167 4.167 12 C -0.198 4.198 13 C 0.088 3.912 14 C -0.465 4.465 15 H 0.075 0.925 16 C 0.075 3.925 17 N -0.800 5.800 18 Si 0.908 3.092 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.267 1.267 22 C -0.133 4.133 23 C -0.120 4.120 24 H 0.028 0.972 25 H 0.104 0.896 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.280 0.720 38 H 0.125 0.875 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.251 7.562 1.936 13.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.248 5.248 3 C -0.092 4.092 4 C -0.165 4.165 5 C -0.175 4.175 6 C -0.033 4.033 7 H 0.111 0.889 8 C -0.025 4.025 9 O -0.233 6.233 10 C -0.053 4.053 11 C -0.186 4.186 12 C -0.218 4.218 13 C 0.086 3.914 14 C -0.495 4.495 15 H 0.094 0.906 16 C -0.141 4.141 17 N -0.426 5.426 18 Si 0.732 3.268 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.152 4.152 23 C -0.139 4.139 24 H 0.046 0.954 25 H 0.122 0.878 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.143 0.857 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.274 7.218 2.780 13.672 hybrid contribution -1.020 0.164 -1.388 1.730 sum 10.254 7.381 1.392 12.711 Atomic orbital electron populations 1.22908 0.86590 1.05064 0.99444 1.63725 1.09153 1.13061 1.38817 1.23123 0.95369 0.90469 1.00257 1.22677 0.97940 0.99036 0.96893 1.22788 0.99602 0.97016 0.98090 1.22527 0.94301 0.97455 0.89051 0.88935 1.22865 0.92073 0.92122 0.95396 1.85942 1.38602 1.56800 1.41909 1.18614 0.91492 1.02461 0.92726 1.20387 1.00411 1.03033 0.94771 1.20559 0.99236 1.01928 1.00104 1.17584 0.91930 0.89721 0.92145 1.19430 0.99783 1.35801 0.94487 0.90648 1.25864 0.98663 0.94833 0.94789 1.69818 1.27965 1.35405 1.09402 0.86383 0.79542 0.80954 0.79899 1.18897 1.20380 1.19130 1.20981 0.96132 1.01686 0.96399 1.19846 0.96155 0.98740 0.99123 0.95374 0.87775 0.92643 0.93838 0.90402 0.90927 0.90587 0.90415 0.91228 0.92850 0.92745 0.89091 0.88858 0.90879 0.85684 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 8.15 60.07 0.49 0.61 16 2 N -0.52 -7.44 5.44 -231.57 -1.26 -8.70 16 3 C 0.04 0.40 6.72 -2.30 -0.02 0.39 16 4 C -0.13 -1.19 7.08 -24.59 -0.17 -1.37 16 5 C -0.14 -1.43 6.47 -24.91 -0.16 -1.59 16 6 C 0.07 1.02 3.73 -66.73 -0.25 0.77 16 7 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 8 C 0.05 0.84 3.29 37.16 0.12 0.96 16 9 O -0.32 -6.32 7.12 -18.73 -0.13 -6.45 16 10 C -0.01 -0.23 6.71 -38.78 -0.26 -0.49 16 11 C -0.17 -3.79 8.96 -39.83 -0.36 -4.15 16 12 C -0.20 -4.91 9.74 -39.25 -0.38 -5.29 16 13 C 0.09 2.37 5.57 -106.80 -0.60 1.77 16 14 C -0.47 -12.40 9.04 -37.83 -0.34 -12.74 16 15 H 0.08 1.93 7.90 -52.49 -0.41 1.51 16 16 C 0.08 1.90 5.15 -17.34 -0.09 1.81 16 17 N -0.80 -20.76 10.94 55.54 0.61 -20.15 16 18 Si 0.91 18.76 29.59 -169.99 -5.03 13.73 16 19 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 C -0.13 -3.46 8.64 -39.25 -0.34 -3.80 16 23 C -0.12 -2.89 9.92 -39.83 -0.40 -3.28 16 24 H 0.03 0.45 6.05 -51.93 -0.31 0.13 16 25 H 0.10 1.90 5.71 -51.93 -0.30 1.60 16 26 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 27 H 0.04 0.49 7.81 -51.93 -0.41 0.08 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.72 7.85 -51.93 -0.41 0.31 16 33 H 0.05 0.87 5.79 -51.93 -0.30 0.57 16 34 H 0.05 0.85 7.66 -51.93 -0.40 0.45 16 35 H 0.09 1.81 6.27 -52.48 -0.33 1.48 16 36 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 37 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 38 H 0.13 3.35 6.16 -52.49 -0.32 3.02 16 39 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 308.04 15.07 4.64 4.64 Total: -1.00 -27.68 308.04 -9.63 -37.31 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -5.70 Total: 6.01 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: -2.75 Total: -26.39 kcal Atomic # 7 Polarization: -28.19 SS G_CDS: -0.65 Total: -28.85 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.13 Total: -6.45 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.68 -9.63 -37.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386644498.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.003 kcal (2) G-P(sol) polarization free energy of solvation -27.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds