Wall clock time and date at job start Mon Mar 30 2020 06:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47844 * 111.00256 * 2 1 4 4 C 1.54906 * 104.79740 * 213.63772 * 3 2 1 5 5 C 1.55147 * 101.64861 * 37.07040 * 4 3 2 6 6 C 1.47440 * 110.99726 * 239.15929 * 2 1 3 7 7 H 1.09001 * 109.88814 * 242.66855 * 6 2 1 8 8 C 1.53002 * 109.88791 * 3.85123 * 6 2 1 9 9 O 1.42902 * 109.47145 * 294.76937 * 8 6 2 10 10 C 1.35677 * 116.99846 * 180.02562 * 9 8 6 11 11 C 1.39314 * 119.82015 * 359.72172 * 10 9 8 12 12 C 1.36432 * 120.18380 * 179.76339 * 11 10 9 13 13 C 1.40831 * 119.81392 * 0.51061 * 12 11 10 14 14 C 1.41217 * 120.17955 * 179.71989 * 13 12 11 15 15 H 1.07996 * 120.00032 * 24.94046 * 14 13 12 16 16 C 1.39888 * 120.00004 * 204.94831 * 14 13 12 17 17 N 1.30882 * 120.00271 * 17.21369 * 16 14 13 18 18 Si 1.86799 * 119.99982 * 197.21390 * 16 14 13 19 19 H 1.48508 * 109.47137 * 59.99824 * 18 16 14 20 20 H 1.48502 * 109.47043 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47142 * 299.99799 * 18 16 14 22 22 C 1.40832 * 119.64226 * 359.74608 * 13 12 11 23 23 C 1.36436 * 119.81126 * 359.97438 * 22 13 12 24 24 H 1.08999 * 109.47361 * 65.80401 * 1 2 3 25 25 H 1.08995 * 109.47777 * 185.80912 * 1 2 3 26 26 H 1.09000 * 109.46903 * 305.80440 * 1 2 3 27 27 H 1.09003 * 110.37386 * 332.47074 * 3 2 1 28 28 H 1.09000 * 110.37191 * 94.80601 * 3 2 1 29 29 H 1.09002 * 110.99004 * 155.16066 * 4 3 2 30 30 H 1.08996 * 110.98771 * 278.98134 * 4 3 2 31 31 H 1.09005 * 110.70022 * 205.96345 * 5 4 3 32 32 H 1.08998 * 110.85141 * 82.80495 * 5 4 3 33 33 H 1.08995 * 109.47341 * 54.77023 * 8 6 2 34 34 H 1.09003 * 109.47191 * 174.76820 * 8 6 2 35 35 H 1.08007 * 119.90210 * 0.02562 * 11 10 9 36 36 H 1.08006 * 120.08944 * 180.25443 * 12 11 10 37 37 H 0.96996 * 120.00449 * 180.02562 * 17 16 14 38 38 H 1.07993 * 120.09450 * 180.02562 * 22 13 12 39 39 H 1.08002 * 119.91284 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3048 1.3027 -0.8296 5 6 2.9157 0.2821 -1.9315 6 6 1.9973 -0.7057 -1.1819 7 1 2.5696 -1.5785 -0.8675 8 6 0.8436 -1.1355 -2.0903 9 8 0.0387 -2.1025 -1.4127 10 6 -1.0341 -2.5907 -2.0848 11 6 -1.3079 -2.1393 -3.3740 12 6 -2.3819 -2.6287 -4.0585 13 6 -3.2208 -3.5849 -3.4541 14 6 -4.3379 -4.0923 -4.1533 15 1 -4.3471 -4.0869 -5.2332 16 6 -5.4327 -4.6017 -3.4470 17 7 -5.5853 -4.3138 -2.1794 18 14 -6.6770 -5.6931 -4.3132 19 1 -5.9939 -6.9029 -4.8377 20 1 -7.7332 -6.0993 -3.3515 21 1 -7.2927 -4.9451 -5.4386 22 6 -2.9400 -4.0319 -2.1484 23 6 -1.8588 -3.5366 -1.4798 24 1 -0.3634 0.4212 -0.9374 25 1 -0.3634 -1.0223 0.1040 26 1 -0.3633 0.6012 0.8335 27 1 1.2890 2.0593 -0.4723 28 1 2.2148 1.7038 1.0182 29 1 3.5495 2.2720 -1.2640 30 1 4.1302 0.9280 -0.2243 31 1 3.8000 -0.2280 -2.3138 32 1 2.3752 0.7725 -2.7411 33 1 0.2347 -0.2667 -2.3400 34 1 1.2447 -1.5730 -3.0045 35 1 -0.6658 -1.4030 -3.8345 36 1 -2.5904 -2.2807 -5.0594 37 1 -6.3442 -4.6673 -1.6896 38 1 -3.5783 -4.7652 -1.6781 39 1 -1.6421 -3.8780 -0.4783 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386644498.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:13 Heat of formation + Delta-G solvation = -23.893624 kcal Electronic energy + Delta-G solvation = -19418.604201 eV Core-core repulsion = 16518.631946 eV Total energy + Delta-G solvation = -2899.972255 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.17013 -39.72979 -37.93144 -35.21115 -32.97498 -32.13774 -31.28110 -30.70764 -26.99270 -26.54466 -26.01515 -22.95120 -22.59547 -22.01556 -20.64089 -19.22257 -18.65752 -17.83480 -17.07872 -16.77582 -16.05260 -16.02860 -15.75219 -14.81445 -14.72829 -14.50136 -14.19637 -14.04968 -13.74885 -13.54634 -13.36721 -13.05722 -12.79964 -12.62618 -12.47357 -12.31868 -12.23681 -12.14559 -11.92474 -11.71386 -11.64477 -11.34481 -11.19016 -10.84606 -9.56819 -9.26197 -8.90428 -8.59205 -6.23392 0.95291 1.02038 1.39415 1.50392 1.54379 2.22654 2.51522 2.72956 3.08734 3.62172 3.69163 3.74748 3.96412 4.06600 4.22016 4.27266 4.34090 4.36922 4.51660 4.53425 4.56848 4.64792 4.84407 4.91338 4.97275 5.04385 5.06700 5.15399 5.19939 5.25672 5.30443 5.33328 5.57283 5.64416 5.88864 6.01599 6.05142 6.10566 6.26380 6.56050 6.79858 6.94772 7.09254 8.37112 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.053928 B = 0.003878 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.088459 B = 7218.178769 C = 7447.393335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.537 5.537 3 C 0.031 3.969 4 C -0.119 4.119 5 C -0.131 4.131 6 C 0.075 3.925 7 H 0.086 0.914 8 C 0.047 3.953 9 O -0.321 6.321 10 C 0.003 3.997 11 C -0.166 4.166 12 C -0.209 4.209 13 C 0.056 3.944 14 C -0.502 4.502 15 H 0.075 0.925 16 C 0.034 3.966 17 N -0.832 5.832 18 Si 0.982 3.018 19 H -0.261 1.261 20 H -0.269 1.269 21 H -0.260 1.260 22 C -0.150 4.150 23 C -0.132 4.132 24 H 0.020 0.980 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.122 0.878 36 H 0.103 0.897 37 H 0.287 0.713 38 H 0.110 0.890 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.616 8.635 1.438 15.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.262 5.262 3 C -0.096 4.096 4 C -0.156 4.156 5 C -0.169 4.169 6 C -0.034 4.034 7 H 0.104 0.896 8 C -0.029 4.029 9 O -0.237 6.237 10 C -0.041 4.041 11 C -0.185 4.185 12 C -0.228 4.228 13 C 0.053 3.947 14 C -0.532 4.532 15 H 0.093 0.907 16 C -0.180 4.180 17 N -0.459 5.459 18 Si 0.803 3.197 19 H -0.186 1.186 20 H -0.193 1.193 21 H -0.184 1.184 22 C -0.170 4.170 23 C -0.151 4.151 24 H 0.038 0.962 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.140 0.860 36 H 0.121 0.879 37 H 0.098 0.902 38 H 0.128 0.872 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 12.669 8.312 2.288 15.324 hybrid contribution -1.289 -0.058 -1.147 1.726 sum 11.380 8.255 1.141 14.104 Atomic orbital electron populations 1.22714 0.87823 1.03177 0.99503 1.63707 1.08052 1.15139 1.39258 1.23237 0.96317 0.88695 1.01378 1.22684 0.96919 0.99873 0.96166 1.22799 0.99460 0.96507 0.98170 1.22595 0.93638 0.98187 0.88953 0.89571 1.23162 0.92236 0.91130 0.96340 1.85987 1.37918 1.57532 1.42277 1.18667 0.91642 1.01193 0.92598 1.20653 1.00108 1.03142 0.94600 1.20788 0.99619 1.01680 1.00755 1.17929 0.92989 0.90919 0.92817 1.19694 1.00844 1.37918 0.94713 0.90654 1.26723 1.00309 0.95519 0.95427 1.69878 1.28956 1.36207 1.10824 0.85256 0.76918 0.78714 0.78819 1.18561 1.19289 1.18417 1.20904 0.96971 1.02338 0.96789 1.20001 0.96105 0.99317 0.99670 0.96157 0.90759 0.91552 0.93763 0.89511 0.88665 0.89849 0.88593 0.90831 0.92848 0.91828 0.86021 0.87862 0.90212 0.87223 0.87392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 8.15 127.69 1.04 1.52 16 2 N -0.54 -14.38 5.44 -886.56 -4.83 -19.20 16 3 C 0.03 0.62 6.72 86.77 0.58 1.20 16 4 C -0.12 -1.79 7.08 31.98 0.23 -1.56 16 5 C -0.13 -2.30 6.47 31.77 0.21 -2.10 16 6 C 0.07 1.89 3.73 45.26 0.17 2.06 16 7 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 8 C 0.05 1.45 3.29 71.98 0.24 1.69 16 9 O -0.32 -12.64 7.12 -89.95 -0.64 -13.28 16 10 C 0.00 0.13 6.71 22.79 0.15 0.28 16 11 C -0.17 -7.43 8.96 22.11 0.20 -7.23 16 12 C -0.21 -10.40 9.74 22.48 0.22 -10.18 16 13 C 0.06 3.06 5.57 -21.28 -0.12 2.95 16 14 C -0.50 -27.49 9.04 23.40 0.21 -27.28 16 15 H 0.08 3.96 7.90 -2.91 -0.02 3.93 16 16 C 0.03 1.74 5.15 85.23 0.44 2.18 16 17 N -0.83 -44.31 10.94 21.82 0.24 -44.07 16 18 Si 0.98 38.72 29.59 68.60 2.03 40.75 16 19 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 20 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 21 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 22 C -0.15 -8.16 8.64 22.48 0.19 -7.96 16 23 C -0.13 -6.51 9.92 22.11 0.22 -6.29 16 24 H 0.02 0.63 6.05 -2.39 -0.01 0.62 16 25 H 0.07 2.72 5.71 -2.39 -0.01 2.71 16 26 H 0.07 1.82 8.13 -2.39 -0.02 1.80 16 27 H 0.04 0.88 7.81 -2.39 -0.02 0.86 16 28 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.07 1.26 7.85 -2.39 -0.02 1.24 16 33 H 0.05 1.65 5.79 -2.39 -0.01 1.64 16 34 H 0.06 1.84 7.66 -2.39 -0.02 1.82 16 35 H 0.12 4.60 6.27 -2.91 -0.02 4.58 16 36 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 37 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 38 H 0.11 6.17 6.16 -2.91 -0.02 6.15 16 39 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -60.68 308.04 1.81 -58.88 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 1.03 Total: 27.66 kcal Atomic # 6 Polarization: -54.71 SS G_CDS: 3.98 Total: -50.73 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -4.59 Total: -63.27 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.64 Total: -13.28 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -60.68 1.81 -58.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386644498.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.982 kcal (2) G-P(sol) polarization free energy of solvation -60.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds