Wall clock time and date at job start Mon Mar 30 2020 06:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47852 * 110.99823 * 2 1 4 4 C 1.54915 * 104.79182 * 146.36238 * 3 2 1 5 5 C 1.55398 * 101.74309 * 323.02052 * 4 3 2 6 6 C 1.47436 * 110.99724 * 120.84121 * 2 1 3 7 7 H 1.09001 * 109.88658 * 117.17661 * 6 2 1 8 8 C 1.52996 * 109.89105 * 356.15032 * 6 2 1 9 9 O 1.42901 * 109.47359 * 183.34127 * 8 6 2 10 10 C 1.35676 * 117.00220 * 179.97438 * 9 8 6 11 11 C 1.39306 * 119.81545 * 0.24543 * 10 9 8 12 12 C 1.36440 * 120.18613 * 180.25647 * 11 10 9 13 13 C 1.40838 * 119.80685 * 359.50192 * 12 11 10 14 14 C 1.41218 * 120.17703 * 180.23052 * 13 12 11 15 15 H 1.08005 * 119.99893 * 152.99259 * 14 13 12 16 16 C 1.39883 * 120.00118 * 332.99006 * 14 13 12 17 17 N 1.30886 * 119.99644 * 161.37675 * 16 14 13 18 18 Si 1.86797 * 120.00137 * 341.38104 * 16 14 13 19 19 H 1.48498 * 109.47501 * 95.20697 * 18 16 14 20 20 H 1.48504 * 109.47048 * 215.21411 * 18 16 14 21 21 H 1.48503 * 109.46705 * 335.20507 * 18 16 14 22 22 C 1.40836 * 119.64187 * 0.24958 * 13 12 11 23 23 C 1.36429 * 119.81330 * 0.02562 * 22 13 12 24 24 H 1.09000 * 109.47177 * 301.67049 * 1 2 3 25 25 H 1.09007 * 109.46679 * 61.66740 * 1 2 3 26 26 H 1.08990 * 109.47622 * 181.66519 * 1 2 3 27 27 H 1.08998 * 110.37278 * 265.18992 * 3 2 1 28 28 H 1.08998 * 110.37446 * 27.53513 * 3 2 1 29 29 H 1.09004 * 110.98884 * 81.02078 * 4 3 2 30 30 H 1.08992 * 110.98906 * 204.79570 * 4 3 2 31 31 H 1.09004 * 110.67265 * 277.17497 * 5 4 3 32 32 H 1.08994 * 110.84338 * 153.86211 * 5 4 3 33 33 H 1.09000 * 109.47104 * 63.34644 * 8 6 2 34 34 H 1.08998 * 109.47392 * 303.34380 * 8 6 2 35 35 H 1.07994 * 119.91322 * 0.03261 * 11 10 9 36 36 H 1.07998 * 120.09862 * 179.78085 * 12 11 10 37 37 H 0.97003 * 119.99387 * 180.02562 * 17 16 14 38 38 H 1.08001 * 120.09213 * 180.02562 * 22 13 12 39 39 H 1.08004 * 119.91187 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3048 1.3027 0.8297 5 6 2.9182 0.2789 1.9329 6 6 1.9973 -0.7057 1.1818 7 1 2.5672 -1.5800 0.8675 8 6 0.8437 -1.1356 2.0902 9 8 1.3689 -1.7490 3.2692 10 6 0.4714 -2.1898 4.1863 11 6 -0.8929 -2.0371 3.9493 12 6 -1.8019 -2.4728 4.8687 13 6 -1.3577 -3.0878 6.0553 14 6 -2.2918 -3.5461 7.0100 15 1 -2.0351 -4.3637 7.6675 16 6 -3.5496 -2.9412 7.1043 17 7 -4.5321 -3.5644 7.7037 18 14 -3.8268 -1.2441 6.3748 19 1 -4.3918 -1.3790 5.0081 20 1 -4.7753 -0.4865 7.2302 21 1 -2.5335 -0.5175 6.3063 22 6 0.0232 -3.2429 6.2847 23 6 0.9191 -2.7966 5.3577 24 1 -0.3633 0.5396 0.8746 25 1 -0.3633 0.4878 -0.9046 26 1 -0.3634 -1.0271 0.0299 27 1 2.2148 1.7039 -1.0182 28 1 1.2889 2.0593 0.4724 29 1 4.1302 0.9281 0.2243 30 1 3.5499 2.2721 1.2634 31 1 2.3782 0.7706 2.7421 32 1 3.8018 -0.2336 2.3133 33 1 0.2108 -1.8480 1.5612 34 1 0.2542 -0.2616 2.3672 35 1 -1.2319 -1.5693 3.0369 36 1 -2.8591 -2.3506 4.6851 37 1 -5.4044 -3.1451 7.7687 38 1 0.3719 -3.7139 7.1919 39 1 1.9785 -2.9144 5.5321 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386644499.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:16 Heat of formation + Delta-G solvation = -10.424108 kcal Electronic energy + Delta-G solvation = -19435.769666 eV Core-core repulsion = 16536.381494 eV Total energy + Delta-G solvation = -2899.388173 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.87952 -38.54159 -36.46885 -33.40945 -32.33336 -30.85748 -29.95451 -29.45256 -25.78841 -25.53460 -24.32956 -21.77284 -21.40206 -20.62689 -19.42052 -17.56297 -17.45499 -16.41595 -15.91845 -15.30535 -15.05592 -14.45027 -14.25141 -13.95366 -13.57769 -13.30439 -12.99072 -12.72865 -12.61353 -12.50960 -12.14634 -11.80928 -11.57864 -11.45842 -11.24999 -11.22249 -10.82316 -10.78377 -10.63596 -10.36873 -10.11246 -9.91187 -9.48472 -9.08285 -8.49293 -7.93191 -7.23004 -6.95505 -4.40078 2.53734 2.62052 3.06964 3.18542 3.28999 3.58662 3.95784 4.13735 4.45523 4.51776 4.59502 4.82966 5.07431 5.16202 5.22163 5.35107 5.37868 5.42013 5.44014 5.55764 5.73313 5.74581 5.82154 5.85367 5.91891 5.95560 6.01761 6.22044 6.38821 6.61257 6.74321 6.80066 6.82962 6.96705 7.14345 7.41120 7.52136 7.77442 7.92046 8.27106 8.37770 8.67153 8.80230 10.07469 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.031099 B = 0.004749 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.140514 B = 5894.283764 C = 6410.222812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.522 5.522 3 C 0.038 3.962 4 C -0.132 4.132 5 C -0.129 4.129 6 C 0.073 3.927 7 H 0.094 0.906 8 C 0.053 3.947 9 O -0.323 6.323 10 C -0.011 4.011 11 C -0.150 4.150 12 C -0.213 4.213 13 C 0.072 3.928 14 C -0.447 4.447 15 H 0.090 0.910 16 C 0.083 3.917 17 N -0.810 5.810 18 Si 0.911 3.089 19 H -0.273 1.273 20 H -0.292 1.292 21 H -0.245 1.245 22 C -0.180 4.180 23 C -0.099 4.099 24 H 0.034 0.966 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.284 0.716 38 H 0.108 0.892 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.150 9.081 -12.110 17.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 N -0.247 5.247 3 C -0.089 4.089 4 C -0.170 4.170 5 C -0.168 4.168 6 C -0.035 4.035 7 H 0.112 0.888 8 C -0.024 4.024 9 O -0.238 6.238 10 C -0.054 4.054 11 C -0.169 4.169 12 C -0.233 4.233 13 C 0.069 3.931 14 C -0.475 4.475 15 H 0.108 0.892 16 C -0.135 4.135 17 N -0.435 5.435 18 Si 0.738 3.262 19 H -0.199 1.199 20 H -0.219 1.219 21 H -0.169 1.169 22 C -0.199 4.199 23 C -0.118 4.118 24 H 0.052 0.948 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.236 8.742 -12.411 17.769 hybrid contribution -1.046 1.123 0.349 1.574 sum 8.190 9.865 -12.061 17.603 Atomic orbital electron populations 1.22652 0.87882 1.02717 1.00939 1.63883 1.08207 1.14375 1.38190 1.23122 0.95877 0.89425 1.00523 1.22777 0.97480 0.99551 0.97156 1.22795 1.00024 0.96411 0.97553 1.22380 0.94872 0.97969 0.88270 0.88765 1.23111 0.96173 0.96874 0.86224 1.85787 1.34258 1.75130 1.28633 1.18503 0.87443 1.07325 0.92152 1.20458 0.92438 1.04351 0.99604 1.20589 0.97562 1.09211 0.95906 1.17719 0.92482 0.91011 0.91919 1.19409 0.95843 1.16103 1.16168 0.89157 1.26133 0.94744 0.99723 0.92893 1.69726 1.02121 1.37436 1.34212 0.86338 0.79512 0.82289 0.78018 1.19918 1.21923 1.16872 1.20628 0.92606 1.07473 0.99227 1.19742 0.98530 1.00989 0.92563 0.94756 0.91307 0.90671 0.90101 0.93517 0.90654 0.90842 0.91080 0.90223 0.92459 0.93081 0.88557 0.88062 0.90527 0.87360 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 8.32 60.07 0.50 0.57 16 2 N -0.52 -6.18 5.44 -231.56 -1.26 -7.44 16 3 C 0.04 0.38 6.73 -2.29 -0.02 0.36 16 4 C -0.13 -1.25 7.08 -24.45 -0.17 -1.42 16 5 C -0.13 -1.54 6.14 -24.77 -0.15 -1.69 16 6 C 0.07 0.96 3.76 -66.73 -0.25 0.71 16 7 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 8 C 0.05 0.83 2.82 37.16 0.10 0.93 16 9 O -0.32 -6.16 9.74 -18.73 -0.18 -6.34 16 10 C -0.01 -0.24 6.71 -38.78 -0.26 -0.50 16 11 C -0.15 -3.32 8.96 -39.83 -0.36 -3.68 16 12 C -0.21 -5.22 7.10 -39.25 -0.28 -5.50 16 13 C 0.07 1.83 5.18 -106.80 -0.55 1.28 16 14 C -0.45 -12.14 9.57 -37.84 -0.36 -12.50 16 15 H 0.09 2.55 8.06 -52.48 -0.42 2.12 16 16 C 0.08 2.20 5.41 -17.34 -0.09 2.11 16 17 N -0.81 -21.72 13.93 55.54 0.77 -20.95 16 18 Si 0.91 21.00 24.44 -169.99 -4.16 16.84 16 19 H -0.27 -6.09 6.66 56.52 0.38 -5.72 16 20 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 21 H -0.25 -5.81 6.80 56.52 0.38 -5.43 16 22 C -0.18 -4.20 9.74 -39.25 -0.38 -4.58 16 23 C -0.10 -2.17 9.92 -39.83 -0.40 -2.56 16 24 H 0.03 0.39 6.50 -51.93 -0.34 0.06 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.85 6.62 -51.93 -0.34 0.51 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.46 7.75 -51.93 -0.40 0.06 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.93 7.85 -51.93 -0.41 0.52 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.89 6.21 -51.93 -0.32 0.57 16 34 H 0.05 0.80 6.10 -51.93 -0.32 0.49 16 35 H 0.10 1.89 6.27 -52.49 -0.33 1.56 16 36 H 0.10 2.47 4.37 -52.49 -0.23 2.24 16 37 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 38 H 0.11 2.35 8.06 -52.49 -0.42 1.92 16 39 H 0.10 1.99 8.06 -52.48 -0.42 1.57 16 LS Contribution 304.56 15.07 4.59 4.59 Total: -1.00 -27.94 304.56 -8.57 -36.51 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.67 Total: 3.25 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: -2.67 Total: -26.47 kcal Atomic # 7 Polarization: -27.90 SS G_CDS: -0.49 Total: -28.38 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.18 Total: -6.34 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.16 Total: 16.84 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.94 -8.57 -36.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386644499.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.090 kcal (2) G-P(sol) polarization free energy of solvation -27.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds