Wall clock time and date at job start Mon Mar 30 2020 06:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47852 * 110.99823 * 2 1 4 4 C 1.54915 * 104.79182 * 146.36238 * 3 2 1 5 5 C 1.55398 * 101.74309 * 323.02052 * 4 3 2 6 6 C 1.47436 * 110.99724 * 120.84121 * 2 1 3 7 7 H 1.09001 * 109.88658 * 117.17661 * 6 2 1 8 8 C 1.52996 * 109.89105 * 356.15032 * 6 2 1 9 9 O 1.42901 * 109.47359 * 183.34127 * 8 6 2 10 10 C 1.35676 * 117.00220 * 179.97438 * 9 8 6 11 11 C 1.39306 * 119.81545 * 0.24543 * 10 9 8 12 12 C 1.36440 * 120.18613 * 180.25647 * 11 10 9 13 13 C 1.40838 * 119.80685 * 359.50192 * 12 11 10 14 14 C 1.41218 * 120.17703 * 180.23052 * 13 12 11 15 15 H 1.08005 * 119.99893 * 152.99259 * 14 13 12 16 16 C 1.39883 * 120.00118 * 332.99006 * 14 13 12 17 17 N 1.30886 * 119.99644 * 161.37675 * 16 14 13 18 18 Si 1.86797 * 120.00137 * 341.38104 * 16 14 13 19 19 H 1.48498 * 109.47501 * 95.20697 * 18 16 14 20 20 H 1.48504 * 109.47048 * 215.21411 * 18 16 14 21 21 H 1.48503 * 109.46705 * 335.20507 * 18 16 14 22 22 C 1.40836 * 119.64187 * 0.24958 * 13 12 11 23 23 C 1.36429 * 119.81330 * 0.02562 * 22 13 12 24 24 H 1.09000 * 109.47177 * 301.67049 * 1 2 3 25 25 H 1.09007 * 109.46679 * 61.66740 * 1 2 3 26 26 H 1.08990 * 109.47622 * 181.66519 * 1 2 3 27 27 H 1.08998 * 110.37278 * 265.18992 * 3 2 1 28 28 H 1.08998 * 110.37446 * 27.53513 * 3 2 1 29 29 H 1.09004 * 110.98884 * 81.02078 * 4 3 2 30 30 H 1.08992 * 110.98906 * 204.79570 * 4 3 2 31 31 H 1.09004 * 110.67265 * 277.17497 * 5 4 3 32 32 H 1.08994 * 110.84338 * 153.86211 * 5 4 3 33 33 H 1.09000 * 109.47104 * 63.34644 * 8 6 2 34 34 H 1.08998 * 109.47392 * 303.34380 * 8 6 2 35 35 H 1.07994 * 119.91322 * 0.03261 * 11 10 9 36 36 H 1.07998 * 120.09862 * 179.78085 * 12 11 10 37 37 H 0.97003 * 119.99387 * 180.02562 * 17 16 14 38 38 H 1.08001 * 120.09213 * 180.02562 * 22 13 12 39 39 H 1.08004 * 119.91187 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3048 1.3027 0.8297 5 6 2.9182 0.2789 1.9329 6 6 1.9973 -0.7057 1.1818 7 1 2.5672 -1.5800 0.8675 8 6 0.8437 -1.1356 2.0902 9 8 1.3689 -1.7490 3.2692 10 6 0.4714 -2.1898 4.1863 11 6 -0.8929 -2.0371 3.9493 12 6 -1.8019 -2.4728 4.8687 13 6 -1.3577 -3.0878 6.0553 14 6 -2.2918 -3.5461 7.0100 15 1 -2.0351 -4.3637 7.6675 16 6 -3.5496 -2.9412 7.1043 17 7 -4.5321 -3.5644 7.7037 18 14 -3.8268 -1.2441 6.3748 19 1 -4.3918 -1.3790 5.0081 20 1 -4.7753 -0.4865 7.2302 21 1 -2.5335 -0.5175 6.3063 22 6 0.0232 -3.2429 6.2847 23 6 0.9191 -2.7966 5.3577 24 1 -0.3633 0.5396 0.8746 25 1 -0.3633 0.4878 -0.9046 26 1 -0.3634 -1.0271 0.0299 27 1 2.2148 1.7039 -1.0182 28 1 1.2889 2.0593 0.4724 29 1 4.1302 0.9281 0.2243 30 1 3.5499 2.2721 1.2634 31 1 2.3782 0.7706 2.7421 32 1 3.8018 -0.2336 2.3133 33 1 0.2108 -1.8480 1.5612 34 1 0.2542 -0.2616 2.3672 35 1 -1.2319 -1.5693 3.0369 36 1 -2.8591 -2.3506 4.6851 37 1 -5.4044 -3.1451 7.7687 38 1 0.3719 -3.7139 7.1919 39 1 1.9785 -2.9144 5.5321 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386644499.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:15 Heat of formation + Delta-G solvation = -27.645936 kcal Electronic energy + Delta-G solvation = -19436.516461 eV Core-core repulsion = 16536.381494 eV Total energy + Delta-G solvation = -2900.134967 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.12639 -39.96409 -38.12113 -35.32038 -33.19164 -32.30855 -31.71393 -30.98328 -26.97007 -26.65729 -25.91884 -23.53982 -22.48484 -22.07293 -20.54841 -19.41527 -19.09970 -17.65826 -17.12706 -16.81180 -16.24442 -16.02677 -15.77395 -15.24750 -15.03247 -14.60011 -14.37752 -14.31044 -14.13773 -13.77337 -13.62244 -13.34024 -12.86697 -12.66200 -12.45325 -12.33697 -12.12287 -12.08429 -12.00990 -11.91827 -11.64985 -11.52411 -11.23866 -10.93254 -9.74676 -9.40629 -9.06468 -8.90936 -6.40649 0.70793 0.76741 1.21790 1.36316 1.45160 2.09032 2.33304 2.55121 3.08287 3.45462 3.58398 3.75663 3.76859 4.05305 4.10365 4.15870 4.24746 4.27470 4.41665 4.49255 4.54561 4.59673 4.63867 4.80348 4.92222 4.94417 4.95908 4.98534 5.05864 5.10087 5.17474 5.28568 5.32739 5.57080 5.68706 5.82957 5.87824 5.97011 6.09347 6.28790 6.55120 6.77361 6.89327 8.17975 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.031099 B = 0.004749 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.140514 B = 5894.283764 C = 6410.222812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.527 5.527 3 C 0.035 3.965 4 C -0.123 4.123 5 C -0.132 4.132 6 C 0.076 3.924 7 H 0.091 0.909 8 C 0.050 3.950 9 O -0.324 6.324 10 C 0.008 3.992 11 C -0.157 4.157 12 C -0.222 4.222 13 C 0.048 3.952 14 C -0.482 4.482 15 H 0.059 0.941 16 C 0.048 3.952 17 N -0.850 5.850 18 Si 0.963 3.037 19 H -0.260 1.260 20 H -0.277 1.277 21 H -0.256 1.256 22 C -0.183 4.183 23 C -0.105 4.105 24 H 0.029 0.971 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.048 0.952 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.124 0.876 36 H 0.100 0.900 37 H 0.293 0.707 38 H 0.117 0.883 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.563 11.106 -14.435 21.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 N -0.252 5.252 3 C -0.092 4.092 4 C -0.161 4.161 5 C -0.170 4.170 6 C -0.032 4.032 7 H 0.109 0.891 8 C -0.027 4.027 9 O -0.239 6.239 10 C -0.036 4.036 11 C -0.176 4.176 12 C -0.241 4.241 13 C 0.046 3.954 14 C -0.512 4.512 15 H 0.077 0.923 16 C -0.166 4.166 17 N -0.477 5.477 18 Si 0.787 3.213 19 H -0.186 1.186 20 H -0.203 1.203 21 H -0.180 1.180 22 C -0.202 4.202 23 C -0.123 4.123 24 H 0.047 0.953 25 H 0.104 0.896 26 H 0.088 0.912 27 H 0.115 0.885 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.142 0.858 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.135 0.865 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.657 10.768 -14.750 21.144 hybrid contribution -1.268 0.503 0.912 1.641 sum 9.389 11.272 -13.838 20.166 Atomic orbital electron populations 1.22689 0.87523 1.02555 1.01613 1.63945 1.08622 1.15555 1.37087 1.23240 0.95996 0.88343 1.01632 1.22770 0.97504 0.99595 0.96243 1.22791 0.99636 0.96777 0.97826 1.22356 0.94079 0.98428 0.88325 0.89114 1.23381 0.97542 0.96640 0.85109 1.85810 1.33914 1.74882 1.29267 1.18719 0.87713 1.04946 0.92212 1.20717 0.92427 1.04264 1.00185 1.20688 0.98072 1.09362 0.95966 1.17872 0.93213 0.92134 0.92228 1.19401 0.97491 1.16859 1.17460 0.92269 1.26762 0.94217 1.02418 0.93238 1.69751 1.02839 1.38959 1.36182 0.85539 0.79100 0.78407 0.78219 1.18554 1.20350 1.17961 1.20834 0.92168 1.07127 1.00082 1.20035 0.99782 1.00318 0.92213 0.95270 0.89588 0.91179 0.88506 0.93370 0.89767 0.89325 0.92426 0.90111 0.92233 0.92920 0.85847 0.88229 0.89648 0.86526 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.08 8.32 127.69 1.06 1.15 16 2 N -0.53 -10.96 5.44 -886.53 -4.83 -15.79 16 3 C 0.04 0.58 6.73 86.77 0.58 1.17 16 4 C -0.12 -1.93 7.08 32.07 0.23 -1.70 16 5 C -0.13 -2.79 6.14 31.87 0.20 -2.59 16 6 C 0.08 1.80 3.76 45.26 0.17 1.97 16 7 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 8 C 0.05 1.42 2.82 71.98 0.20 1.62 16 9 O -0.32 -11.47 9.74 -89.93 -0.88 -12.34 16 10 C 0.01 0.34 6.71 22.79 0.15 0.49 16 11 C -0.16 -6.65 8.96 22.11 0.20 -6.45 16 12 C -0.22 -10.67 7.10 22.49 0.16 -10.51 16 13 C 0.05 2.48 5.18 -21.28 -0.11 2.37 16 14 C -0.48 -27.30 9.57 23.40 0.22 -27.08 16 15 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 16 C 0.05 2.59 5.41 85.23 0.46 3.05 16 17 N -0.85 -47.03 13.93 21.82 0.30 -46.73 16 18 Si 0.96 43.25 24.44 68.60 1.68 44.93 16 19 H -0.26 -11.01 6.66 99.48 0.66 -10.35 16 20 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.26 -11.78 6.80 99.48 0.68 -11.10 16 22 C -0.18 -8.48 9.74 22.48 0.22 -8.26 16 23 C -0.10 -4.36 9.92 22.11 0.22 -4.14 16 24 H 0.03 0.60 6.50 -2.39 -0.02 0.58 16 25 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.07 1.43 6.62 -2.39 -0.02 1.41 16 27 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.05 0.80 7.75 -2.39 -0.02 0.78 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.37 7.85 -2.39 -0.02 1.35 16 32 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.06 1.69 6.21 -2.39 -0.01 1.68 16 34 H 0.05 1.51 6.10 -2.39 -0.01 1.50 16 35 H 0.12 4.48 6.27 -2.91 -0.02 4.46 16 36 H 0.10 4.77 4.37 -2.91 -0.01 4.76 16 37 H 0.29 14.54 8.30 -92.71 -0.77 13.77 16 38 H 0.12 5.08 8.06 -2.91 -0.02 5.06 16 39 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -60.04 304.56 1.21 -58.84 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.96 Total: 20.01 kcal Atomic # 6 Polarization: -52.88 SS G_CDS: 3.97 Total: -48.91 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -4.52 Total: -62.51 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -0.88 Total: -12.34 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.68 Total: 44.93 kcal Total: -60.04 1.21 -58.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386644499.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.192 kcal (2) G-P(sol) polarization free energy of solvation -60.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds