Wall clock time and date at job start Mon Mar 30 2020 06:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35901 * 116.99776 * 2 1 4 4 C 1.38732 * 120.05698 * 180.02562 * 3 2 1 5 5 C 1.38140 * 119.94679 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.05555 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.94142 * 179.97438 * 6 5 4 8 8 N 1.46904 * 109.47407 * 90.00424 * 7 6 5 9 9 C 1.48559 * 111.00066 * 69.86567 * 8 7 6 10 10 C 1.54387 * 104.58955 * 159.04379 * 9 8 7 11 11 C 1.54259 * 105.06271 * 336.15098 * 10 9 8 12 12 H 1.08991 * 110.32625 * 119.00097 * 11 10 9 13 13 C 1.50701 * 110.32157 * 241.10373 * 11 10 9 14 14 H 1.08005 * 119.99834 * 118.53799 * 13 11 10 15 15 C 1.37878 * 120.00375 * 298.54694 * 13 11 10 16 16 N 1.31512 * 119.99477 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00285 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46909 * 90.00158 * 17 15 13 19 19 H 1.48505 * 109.47218 * 209.99855 * 17 15 13 20 20 H 1.48495 * 109.47005 * 329.99872 * 17 15 13 21 21 C 1.48560 * 111.00239 * 185.29090 * 8 7 6 22 22 C 1.38266 * 120.11033 * 0.25476 * 6 5 4 23 23 C 1.38138 * 120.05343 * 359.44959 * 22 6 5 24 24 H 1.09001 * 109.47060 * 59.99765 * 1 2 3 25 25 H 1.09001 * 109.46709 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47215 * 299.99912 * 1 2 3 27 27 H 1.08007 * 120.02787 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.97464 * 180.02562 * 5 4 3 29 29 H 1.08996 * 109.47595 * 329.99505 * 7 6 5 30 30 H 1.09004 * 109.46561 * 209.99644 * 7 6 5 31 31 H 1.08999 * 110.40971 * 40.26912 * 9 8 7 32 32 H 1.08999 * 110.41180 * 277.82119 * 9 8 7 33 33 H 1.09000 * 110.32138 * 95.04641 * 10 9 8 34 34 H 1.09003 * 110.32046 * 217.14933 * 10 9 8 35 35 H 0.97001 * 119.99820 * 180.02562 * 16 15 13 36 36 H 1.09004 * 110.40940 * 82.17346 * 21 8 7 37 37 H 1.08995 * 110.40669 * 319.73353 * 21 8 7 38 38 H 1.07999 * 119.96702 * 179.70848 * 22 6 5 39 39 H 1.08006 * 120.02834 * 180.25399 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2850 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3018 3.6759 0.0016 7 6 3.9860 5.0186 0.0028 8 7 4.2077 5.4565 -1.3818 9 6 2.9234 5.8056 -2.0419 10 6 3.3266 6.7214 -3.2176 11 6 4.6884 7.3207 -2.8100 12 1 5.4578 7.0342 -3.5268 13 6 4.5930 8.8219 -2.7179 14 1 4.7802 9.3182 -1.7771 15 6 4.2667 9.5618 -3.8346 16 7 4.0381 8.9574 -4.9801 17 14 4.1477 11.4225 -3.7203 18 1 5.4737 12.0223 -4.0159 19 1 3.1507 11.9162 -4.7039 20 1 3.7243 11.8081 -2.3502 21 6 4.9933 6.7167 -1.4224 22 6 1.9210 3.6048 0.0080 23 6 1.2915 2.3752 0.0013 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.0209 0.3800 -0.0005 28 1 5.1345 2.5752 -0.0008 29 1 4.9441 4.9378 0.5161 30 1 3.3581 5.7458 0.5177 31 1 2.2731 6.3400 -1.3494 32 1 2.4296 4.9071 -2.4120 33 1 3.4281 6.1392 -4.1334 34 1 2.5883 7.5119 -3.3521 35 1 3.8089 9.4780 -5.7658 36 1 6.0581 6.5042 -1.3260 37 1 4.6669 7.3937 -0.6330 38 1 1.3342 4.5115 0.0140 39 1 0.2129 2.3202 0.0022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397604999.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:11 Heat of formation + Delta-G solvation = -12.025666 kcal Electronic energy + Delta-G solvation = -19145.664183 eV Core-core repulsion = 16246.206562 eV Total energy + Delta-G solvation = -2899.457622 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.14566 -38.38928 -37.05152 -33.37282 -31.55884 -31.02431 -29.19879 -28.10943 -27.48789 -25.06702 -23.76102 -22.53539 -21.16462 -20.03166 -19.29452 -18.15023 -16.34444 -16.19896 -15.83086 -15.39251 -15.09859 -14.59685 -14.30023 -14.05713 -13.86076 -13.44483 -13.04586 -12.64906 -12.39635 -12.18527 -12.07905 -11.64877 -11.13018 -11.09591 -11.03122 -10.75390 -10.65656 -10.58370 -10.44679 -10.20466 -9.71304 -9.26491 -8.91910 -8.71204 -8.37155 -8.09026 -7.73253 -6.00569 -4.04616 1.42594 1.48582 3.20090 3.30120 3.37016 3.39613 3.80375 4.42999 4.75278 4.86716 4.89756 4.96786 4.99303 5.09929 5.26960 5.32422 5.39722 5.47528 5.61932 5.77619 5.85342 5.96541 6.07360 6.17491 6.27608 6.33777 6.38817 6.46044 6.57742 6.78510 6.81371 6.90397 7.15411 7.22566 7.36540 7.58237 7.70794 7.75321 7.91002 8.02053 8.47742 8.98510 9.59312 11.08538 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.042303 B = 0.003782 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.739780 B = 7400.782278 C = 7660.196883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.116 3.884 4 C -0.153 4.153 5 C -0.062 4.062 6 C -0.099 4.099 7 C 0.083 3.917 8 N -0.510 5.510 9 C 0.034 3.966 10 C -0.091 4.091 11 C 0.048 3.952 12 H 0.033 0.967 13 C -0.516 4.516 14 H 0.054 0.946 15 C 0.062 3.938 16 N -0.886 5.886 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.039 3.961 22 C -0.073 4.073 23 C -0.208 4.208 24 H 0.055 0.945 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.127 0.873 28 H 0.130 0.870 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.029 0.971 32 H 0.060 0.940 33 H 0.044 0.956 34 H 0.065 0.935 35 H 0.260 0.740 36 H 0.061 0.939 37 H 0.035 0.965 38 H 0.121 0.879 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.844 -14.327 10.485 18.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.071 3.929 4 C -0.172 4.172 5 C -0.081 4.081 6 C -0.100 4.100 7 C -0.045 4.045 8 N -0.234 5.234 9 C -0.094 4.094 10 C -0.130 4.130 11 C 0.029 3.971 12 H 0.051 0.949 13 C -0.555 4.555 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.525 5.525 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.088 4.088 22 C -0.092 4.092 23 C -0.226 4.226 24 H 0.073 0.927 25 H 0.115 0.885 26 H 0.072 0.928 27 H 0.145 0.855 28 H 0.147 0.853 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.139 0.861 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.536 -14.915 10.033 18.808 hybrid contribution -0.883 1.833 0.367 2.067 sum -6.418 -13.082 10.400 17.902 Atomic orbital electron populations 1.23012 0.78710 1.03603 1.01351 1.86041 1.21148 1.27261 1.89079 1.19003 0.92396 0.83920 0.97560 1.20386 0.91236 0.98578 1.06979 1.20845 0.99964 0.90711 0.96548 1.19769 0.93222 0.95351 1.01624 1.21136 0.99160 0.92240 0.91939 1.65446 1.14651 1.30551 1.12724 1.23197 0.90754 0.98089 0.97341 1.22191 1.00206 0.96325 0.94270 1.19359 0.93457 0.94249 0.89993 0.94884 1.21207 1.47559 0.91154 0.95563 0.92750 1.24971 0.95317 0.98246 0.95438 1.69992 1.47191 1.35232 1.00036 0.86643 0.77830 0.86034 0.77770 1.20680 1.21271 1.20008 1.23305 0.96623 0.88245 1.00587 1.20877 0.94212 0.96915 0.97158 1.21148 0.99716 0.92350 1.09431 0.92669 0.88503 0.92820 0.85489 0.85254 0.90565 0.94350 0.95249 0.92183 0.93719 0.91586 0.93044 0.92093 0.94686 0.86056 0.85816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.85 10.50 -19.43 -0.20 -4.06 16 3 C 0.12 1.52 6.69 -39.22 -0.26 1.26 16 4 C -0.15 -1.99 9.99 -39.43 -0.39 -2.38 16 5 C -0.06 -0.84 9.69 -39.61 -0.38 -1.22 16 6 C -0.10 -1.44 5.09 -104.60 -0.53 -1.98 16 7 C 0.08 1.32 4.96 -4.97 -0.02 1.29 16 8 N -0.51 -9.79 5.36 -231.41 -1.24 -11.03 16 9 C 0.03 0.68 5.48 -2.18 -0.01 0.67 16 10 C -0.09 -2.18 5.75 -25.35 -0.15 -2.33 16 11 C 0.05 1.22 2.99 -90.39 -0.27 0.95 16 12 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 13 C -0.52 -14.12 8.37 -34.44 -0.29 -14.41 16 14 H 0.05 1.47 7.58 -52.48 -0.40 1.07 16 15 C 0.06 1.72 5.09 -17.82 -0.09 1.63 16 16 N -0.89 -25.50 12.35 55.43 0.68 -24.82 16 17 Si 0.89 21.20 29.54 -169.99 -5.02 16.17 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 C 0.04 0.84 6.01 -2.18 -0.01 0.82 16 22 C -0.07 -1.00 8.74 -39.61 -0.35 -1.35 16 23 C -0.21 -2.62 9.04 -39.43 -0.36 -2.97 16 24 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 25 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 27 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 28 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 29 H 0.08 1.10 8.07 -51.93 -0.42 0.68 16 30 H 0.04 0.60 7.82 -51.93 -0.41 0.20 16 31 H 0.03 0.57 7.82 -51.93 -0.41 0.16 16 32 H 0.06 1.14 7.83 -51.93 -0.41 0.74 16 33 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.07 1.71 7.24 -51.93 -0.38 1.34 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.03 0.74 7.56 -51.93 -0.39 0.35 16 38 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.12 1.27 6.30 -52.48 -0.33 0.94 16 LS Contribution 317.38 15.07 4.78 4.78 Total: -1.00 -29.65 317.38 -9.15 -38.80 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -6.03 Total: -1.05 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -2.13 Total: -18.80 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.56 Total: -35.85 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -0.20 Total: -4.06 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.65 -9.15 -38.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397604999.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.776 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds