Wall clock time and date at job start Mon Mar 30 2020 06:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35901 * 116.99776 * 2 1 4 4 C 1.38732 * 120.05698 * 180.02562 * 3 2 1 5 5 C 1.38140 * 119.94679 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.05555 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.94142 * 179.97438 * 6 5 4 8 8 N 1.46904 * 109.47407 * 90.00424 * 7 6 5 9 9 C 1.48559 * 111.00066 * 69.86567 * 8 7 6 10 10 C 1.54387 * 104.58955 * 159.04379 * 9 8 7 11 11 C 1.54259 * 105.06271 * 336.15098 * 10 9 8 12 12 H 1.08991 * 110.32625 * 119.00097 * 11 10 9 13 13 C 1.50701 * 110.32157 * 241.10373 * 11 10 9 14 14 H 1.08005 * 119.99834 * 118.53799 * 13 11 10 15 15 C 1.37878 * 120.00375 * 298.54694 * 13 11 10 16 16 N 1.31512 * 119.99477 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00285 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46909 * 90.00158 * 17 15 13 19 19 H 1.48505 * 109.47218 * 209.99855 * 17 15 13 20 20 H 1.48495 * 109.47005 * 329.99872 * 17 15 13 21 21 C 1.48560 * 111.00239 * 185.29090 * 8 7 6 22 22 C 1.38266 * 120.11033 * 0.25476 * 6 5 4 23 23 C 1.38138 * 120.05343 * 359.44959 * 22 6 5 24 24 H 1.09001 * 109.47060 * 59.99765 * 1 2 3 25 25 H 1.09001 * 109.46709 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47215 * 299.99912 * 1 2 3 27 27 H 1.08007 * 120.02787 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.97464 * 180.02562 * 5 4 3 29 29 H 1.08996 * 109.47595 * 329.99505 * 7 6 5 30 30 H 1.09004 * 109.46561 * 209.99644 * 7 6 5 31 31 H 1.08999 * 110.40971 * 40.26912 * 9 8 7 32 32 H 1.08999 * 110.41180 * 277.82119 * 9 8 7 33 33 H 1.09000 * 110.32138 * 95.04641 * 10 9 8 34 34 H 1.09003 * 110.32046 * 217.14933 * 10 9 8 35 35 H 0.97001 * 119.99820 * 180.02562 * 16 15 13 36 36 H 1.09004 * 110.40940 * 82.17346 * 21 8 7 37 37 H 1.08995 * 110.40669 * 319.73353 * 21 8 7 38 38 H 1.07999 * 119.96702 * 179.70848 * 22 6 5 39 39 H 1.08006 * 120.02834 * 180.25399 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2850 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3018 3.6759 0.0016 7 6 3.9860 5.0186 0.0028 8 7 4.2077 5.4565 -1.3818 9 6 2.9234 5.8056 -2.0419 10 6 3.3266 6.7214 -3.2176 11 6 4.6884 7.3207 -2.8100 12 1 5.4578 7.0342 -3.5268 13 6 4.5930 8.8219 -2.7179 14 1 4.7802 9.3182 -1.7771 15 6 4.2667 9.5618 -3.8346 16 7 4.0381 8.9574 -4.9801 17 14 4.1477 11.4225 -3.7203 18 1 5.4737 12.0223 -4.0159 19 1 3.1507 11.9162 -4.7039 20 1 3.7243 11.8081 -2.3502 21 6 4.9933 6.7167 -1.4224 22 6 1.9210 3.6048 0.0080 23 6 1.2915 2.3752 0.0013 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.0209 0.3800 -0.0005 28 1 5.1345 2.5752 -0.0008 29 1 4.9441 4.9378 0.5161 30 1 3.3581 5.7458 0.5177 31 1 2.2731 6.3400 -1.3494 32 1 2.4296 4.9071 -2.4120 33 1 3.4281 6.1392 -4.1334 34 1 2.5883 7.5119 -3.3521 35 1 3.8089 9.4780 -5.7658 36 1 6.0581 6.5042 -1.3260 37 1 4.6669 7.3937 -0.6330 38 1 1.3342 4.5115 0.0140 39 1 0.2129 2.3202 0.0022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397604999.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:11 Heat of formation + Delta-G solvation = -29.761655 kcal Electronic energy + Delta-G solvation = -19146.433273 eV Core-core repulsion = 16246.206562 eV Total energy + Delta-G solvation = -2900.226712 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.10627 -39.79671 -38.24224 -35.20741 -33.13250 -32.00970 -30.58544 -29.90446 -28.32376 -26.66671 -25.39398 -23.52115 -22.39828 -21.52674 -21.17043 -19.04821 -18.33452 -17.17502 -16.81644 -16.74207 -16.57330 -16.24839 -15.81018 -15.19279 -15.01981 -14.47348 -14.39784 -14.17338 -13.91620 -13.46499 -13.22050 -12.95617 -12.80401 -12.73721 -12.54232 -12.24973 -12.15207 -11.97857 -11.83387 -11.66159 -11.62260 -11.15416 -10.77763 -10.48131 -9.90358 -9.37605 -8.99143 -8.12461 -6.23745 0.44184 0.46000 1.41821 1.42252 1.52469 2.41270 2.42845 2.75822 3.18385 3.41872 3.85916 3.88885 4.01489 4.15061 4.23341 4.33672 4.40679 4.46282 4.48439 4.54285 4.62903 4.66589 4.75302 4.77661 4.83126 4.87279 5.06234 5.12931 5.27296 5.30958 5.35656 5.41651 5.61947 5.70883 5.80652 5.84623 5.88601 5.99378 6.27197 6.41730 6.48058 6.87607 7.44108 8.96502 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.042303 B = 0.003782 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.739780 B = 7400.782278 C = 7660.196883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.112 3.888 4 C -0.163 4.163 5 C -0.066 4.066 6 C -0.117 4.117 7 C 0.087 3.913 8 N -0.513 5.513 9 C 0.050 3.950 10 C -0.084 4.084 11 C 0.039 3.961 12 H -0.003 1.003 13 C -0.532 4.532 14 H 0.056 0.944 15 C 0.012 3.988 16 N -0.918 5.918 17 Si 0.956 3.044 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.267 1.267 21 C 0.052 3.948 22 C -0.081 4.081 23 C -0.210 4.210 24 H 0.059 0.941 25 H 0.120 0.880 26 H 0.064 0.936 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.025 0.975 34 H 0.039 0.961 35 H 0.260 0.740 36 H 0.071 0.929 37 H 0.036 0.964 38 H 0.126 0.874 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.616 -14.893 11.936 20.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.066 3.934 4 C -0.181 4.181 5 C -0.084 4.084 6 C -0.118 4.118 7 C -0.041 4.041 8 N -0.237 5.237 9 C -0.078 4.078 10 C -0.123 4.123 11 C 0.020 3.980 12 H 0.015 0.985 13 C -0.571 4.571 14 H 0.074 0.926 15 C -0.187 4.187 16 N -0.557 5.557 17 Si 0.781 3.219 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.191 1.191 21 C -0.076 4.076 22 C -0.100 4.100 23 C -0.228 4.228 24 H 0.078 0.922 25 H 0.138 0.862 26 H 0.083 0.917 27 H 0.159 0.841 28 H 0.158 0.842 29 H 0.109 0.891 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.054 0.946 38 H 0.144 0.856 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.311 -15.494 11.503 20.303 hybrid contribution -0.676 1.899 -0.088 2.018 sum -6.988 -13.595 11.416 19.078 Atomic orbital electron populations 1.23318 0.76673 1.05496 1.02082 1.86032 1.23298 1.26763 1.88816 1.19200 0.92706 0.84548 0.96918 1.20617 0.91705 0.98972 1.06814 1.21001 1.00596 0.90636 0.96215 1.19724 0.93704 0.94894 1.03485 1.21166 1.00305 0.92953 0.89650 1.65414 1.13894 1.29058 1.15357 1.22998 0.91340 0.97610 0.95865 1.21983 0.98977 0.96027 0.95317 1.19338 0.93050 0.93923 0.91711 0.98472 1.21542 1.47389 0.92436 0.95705 0.92619 1.25776 0.94958 1.02916 0.95081 1.70123 1.47982 1.36936 1.00673 0.85593 0.77882 0.80367 0.78036 1.20148 1.21003 1.19094 1.23067 0.97623 0.89017 0.97856 1.21013 0.94075 0.97648 0.97237 1.21370 1.00912 0.91767 1.08759 0.92227 0.86198 0.91720 0.84140 0.84203 0.89120 0.94016 0.94344 0.91013 0.95578 0.94204 0.93065 0.91105 0.94559 0.85609 0.83676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -7.31 10.50 -92.44 -0.97 -8.28 16 3 C 0.11 2.70 6.69 22.51 0.15 2.85 16 4 C -0.16 -3.93 9.99 22.36 0.22 -3.71 16 5 C -0.07 -1.67 9.69 22.25 0.22 -1.45 16 6 C -0.12 -3.22 5.09 -19.85 -0.10 -3.32 16 7 C 0.09 2.58 4.96 85.56 0.42 3.00 16 8 N -0.51 -19.15 5.36 -886.03 -4.75 -23.90 16 9 C 0.05 1.95 5.48 86.45 0.47 2.42 16 10 C -0.08 -4.13 5.75 31.49 0.18 -3.95 16 11 C 0.04 2.01 2.99 -10.65 -0.03 1.97 16 12 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 13 C -0.53 -29.48 8.37 25.60 0.21 -29.27 16 14 H 0.06 3.00 7.58 -2.91 -0.02 2.97 16 15 C 0.01 0.65 5.09 84.66 0.43 1.08 16 16 N -0.92 -54.05 12.35 21.45 0.26 -53.79 16 17 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 C 0.05 2.17 6.01 86.45 0.52 2.69 16 22 C -0.08 -2.08 8.74 22.25 0.19 -1.88 16 23 C -0.21 -4.82 9.04 22.36 0.20 -4.62 16 24 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 25 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 0.73 7.66 -2.39 -0.02 0.71 16 27 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 28 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 29 H 0.09 2.42 8.07 -2.39 -0.02 2.40 16 30 H 0.04 1.22 7.82 -2.38 -0.02 1.20 16 31 H 0.04 1.44 7.82 -2.39 -0.02 1.42 16 32 H 0.07 2.66 7.83 -2.39 -0.02 2.64 16 33 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.04 2.12 7.24 -2.39 -0.02 2.10 16 35 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 36 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.04 1.50 7.56 -2.39 -0.02 1.48 16 38 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 39 H 0.15 2.59 6.30 -2.91 -0.02 2.58 16 Total: -1.00 -63.67 317.38 1.80 -61.88 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 1.01 Total: 11.25 kcal Atomic # 6 Polarization: -37.03 SS G_CDS: 4.21 Total: -32.82 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -4.48 Total: -77.69 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.97 Total: -8.28 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -63.67 1.80 -61.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397604999.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.115 kcal (2) G-P(sol) polarization free energy of solvation -63.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds