Wall clock time and date at job start Mon Mar 30 2020 06:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35894 * 117.00295 * 2 1 4 4 C 1.38729 * 120.05985 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.95010 * 180.02562 * 4 3 2 6 6 C 1.38271 * 120.05204 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94071 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.47005 * 90.00163 * 7 6 5 9 9 C 1.47446 * 110.99928 * 290.11944 * 8 7 6 10 10 C 1.54316 * 107.37138 * 236.66596 * 9 8 7 11 11 C 1.55397 * 102.90164 * 337.89323 * 10 9 8 12 12 H 1.08998 * 110.86886 * 277.39394 * 11 10 9 13 13 C 1.50695 * 111.05584 * 153.65298 * 11 10 9 14 14 H 1.08002 * 119.99749 * 272.85799 * 13 11 10 15 15 C 1.37875 * 120.00231 * 92.87182 * 13 11 10 16 16 N 1.31516 * 120.00428 * 179.18076 * 15 13 11 17 17 Si 1.86796 * 119.99804 * 359.17105 * 15 13 11 18 18 H 1.48504 * 109.47074 * 84.86441 * 17 15 13 19 19 H 1.48502 * 109.47205 * 204.86018 * 17 15 13 20 20 H 1.48500 * 109.47423 * 324.86099 * 17 15 13 21 21 C 1.47848 * 111.00093 * 169.27999 * 8 7 6 22 22 C 1.38271 * 120.11144 * 0.24481 * 6 5 4 23 23 C 1.38146 * 120.05272 * 359.46046 * 22 6 5 24 24 H 1.09002 * 109.46612 * 300.00256 * 1 2 3 25 25 H 1.09004 * 109.46969 * 59.99872 * 1 2 3 26 26 H 1.09005 * 109.47160 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.02398 * 0.04359 * 4 3 2 28 28 H 1.08004 * 119.97663 * 179.97438 * 5 4 3 29 29 H 1.08992 * 109.47354 * 329.99377 * 7 6 5 30 30 H 1.09005 * 109.46918 * 209.99270 * 7 6 5 31 31 H 1.09002 * 109.88582 * 356.15464 * 9 8 7 32 32 H 1.09002 * 109.89041 * 117.17485 * 9 8 7 33 33 H 1.08999 * 110.70846 * 96.18151 * 10 9 8 34 34 H 1.09003 * 110.70424 * 219.41330 * 10 9 8 35 35 H 0.96996 * 120.00407 * 179.97438 * 16 15 13 36 36 H 1.08993 * 110.37260 * 265.19217 * 21 8 7 37 37 H 1.09001 * 110.36823 * 27.53147 * 21 8 7 38 38 H 1.07998 * 119.96638 * 179.70763 * 22 6 5 39 39 H 1.07999 * 120.02312 * 180.29714 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 0.0016 7 6 3.9863 5.0184 0.0028 8 7 4.2080 5.4562 -1.3818 9 6 5.2365 4.6292 -2.0392 10 6 6.3439 5.5813 -2.5376 11 6 5.6097 6.9475 -2.6334 12 1 5.0607 7.0284 -3.5716 13 6 6.5756 8.0935 -2.4759 14 1 6.8179 8.4639 -1.4908 15 6 7.1497 8.6692 -3.5895 16 7 7.9802 9.6798 -3.4531 17 14 6.7481 8.0136 -5.2919 18 1 5.4966 8.6447 -5.7828 19 1 7.8614 8.3338 -6.2210 20 1 6.5668 6.5412 -5.2253 21 6 4.6399 6.8694 -1.4280 22 6 1.9211 3.6047 0.0078 23 6 1.2916 2.3750 0.0011 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 4.0209 0.3798 -0.0017 28 1 5.1347 2.5749 0.0000 29 1 4.9443 4.9375 0.5161 30 1 3.3584 5.7457 0.5176 31 1 5.6524 3.9180 -1.3255 32 1 4.7994 4.0949 -2.8828 33 1 7.1607 5.6329 -1.8177 34 1 6.7099 5.2683 -3.5155 35 1 8.3844 10.0845 -4.2364 36 1 3.7826 7.5232 -1.5876 37 1 5.1571 7.1383 -0.5069 38 1 1.3344 4.5114 0.0138 39 1 0.2130 2.3202 0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397605001.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:13 Heat of formation + Delta-G solvation = -10.582682 kcal Electronic energy + Delta-G solvation = -19114.432478 eV Core-core repulsion = 16215.037429 eV Total energy + Delta-G solvation = -2899.395049 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.22510 -38.59051 -37.16737 -33.27842 -31.81635 -31.10299 -29.54400 -28.44698 -27.59948 -25.26888 -23.67641 -22.70221 -21.24849 -19.92433 -19.42608 -18.20509 -17.07212 -16.33469 -15.89165 -15.46548 -15.22520 -14.80530 -14.33509 -13.91223 -13.86148 -13.51639 -12.96600 -12.69564 -12.52456 -12.40153 -12.36459 -12.05021 -11.54617 -11.17973 -11.06503 -10.99858 -10.81205 -10.71956 -10.34330 -10.00501 -9.75023 -9.59457 -9.09094 -8.98457 -8.54098 -8.13607 -7.72805 -6.09396 -4.08659 1.34627 1.42479 3.13807 3.30087 3.38039 3.41637 3.72955 4.42130 4.69534 4.71245 4.82156 4.91120 4.92761 5.02109 5.20237 5.21656 5.31395 5.38357 5.48196 5.62481 5.69154 5.87406 5.93340 6.06324 6.08039 6.23730 6.28055 6.32218 6.37139 6.61076 6.71018 6.74145 6.79606 6.87040 7.13803 7.30119 7.36713 7.50536 7.66655 7.80419 8.50947 8.94198 9.53797 11.03572 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.043396 B = 0.003840 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.066887 B = 7290.059109 C = 7428.871350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.117 3.883 4 C -0.152 4.152 5 C -0.074 4.074 6 C -0.100 4.100 7 C 0.091 3.909 8 N -0.530 5.530 9 C 0.042 3.958 10 C -0.145 4.145 11 C 0.015 3.985 12 H 0.040 0.960 13 C -0.508 4.508 14 H 0.072 0.928 15 C 0.071 3.929 16 N -0.901 5.901 17 Si 0.879 3.121 18 H -0.276 1.276 19 H -0.290 1.290 20 H -0.263 1.263 21 C 0.053 3.947 22 C -0.061 4.061 23 C -0.209 4.209 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.097 0.903 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.264 0.736 36 H 0.068 0.932 37 H 0.042 0.958 38 H 0.125 0.875 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.256 -16.802 7.253 22.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.072 3.928 4 C -0.171 4.171 5 C -0.093 4.093 6 C -0.101 4.101 7 C -0.037 4.037 8 N -0.254 5.254 9 C -0.086 4.086 10 C -0.184 4.184 11 C -0.005 4.005 12 H 0.058 0.942 13 C -0.546 4.546 14 H 0.091 0.909 15 C -0.131 4.131 16 N -0.539 5.539 17 Si 0.706 3.294 18 H -0.202 1.202 19 H -0.217 1.217 20 H -0.188 1.188 21 C -0.074 4.074 22 C -0.080 4.080 23 C -0.228 4.228 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.115 0.885 27 H 0.145 0.855 28 H 0.145 0.855 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.143 0.857 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.528 -16.902 6.900 22.722 hybrid contribution 0.376 -0.072 -0.563 0.681 sum -13.152 -16.973 6.337 22.388 Atomic orbital electron populations 1.23016 0.78671 1.03637 1.01340 1.86043 1.21177 1.27257 1.89045 1.19002 0.92360 0.83982 0.97489 1.20356 0.91296 0.98489 1.06916 1.20940 0.99802 0.91104 0.97448 1.19803 0.93619 0.95007 1.01692 1.21118 0.98567 0.92836 0.91185 1.63674 1.43884 1.04130 1.13745 1.22851 0.92009 0.95728 0.98007 1.23189 0.97411 0.97457 1.00331 1.20209 0.93300 0.93039 0.93928 0.94164 1.20914 1.24425 1.14295 0.94989 0.90945 1.25049 0.94557 0.94313 0.99147 1.69900 1.30434 1.23247 1.30288 0.86847 0.77973 0.80266 0.84273 1.20189 1.21665 1.18754 1.23080 0.97995 0.86602 0.99681 1.20816 0.94011 0.96857 0.96321 1.21187 0.99744 0.92404 1.09421 0.92781 0.92685 0.88487 0.85507 0.85519 0.94066 0.90466 0.93859 0.91951 0.91955 0.92460 0.92618 0.91368 0.93961 0.85698 0.85769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.66 10.50 -19.41 -0.20 -3.86 16 3 C 0.12 1.44 6.69 -39.22 -0.26 1.18 16 4 C -0.15 -1.89 9.99 -39.44 -0.39 -2.29 16 5 C -0.07 -0.96 8.73 -39.61 -0.35 -1.31 16 6 C -0.10 -1.38 5.11 -104.60 -0.53 -1.91 16 7 C 0.09 1.36 4.75 -4.98 -0.02 1.33 16 8 N -0.53 -9.47 5.15 -232.69 -1.20 -10.67 16 9 C 0.04 0.75 6.25 -2.84 -0.02 0.73 16 10 C -0.14 -3.04 6.29 -24.77 -0.16 -3.20 16 11 C 0.01 0.35 2.38 -89.50 -0.21 0.13 16 12 H 0.04 0.97 6.01 -51.93 -0.31 0.66 16 13 C -0.51 -14.06 8.98 -34.44 -0.31 -14.37 16 14 H 0.07 2.17 8.00 -52.49 -0.42 1.75 16 15 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 16 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 17 Si 0.88 21.58 26.81 -169.99 -4.56 17.02 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.26 -6.19 6.09 56.52 0.34 -5.85 16 21 C 0.05 1.08 6.14 -2.30 -0.01 1.06 16 22 C -0.06 -0.78 9.69 -39.60 -0.38 -1.16 16 23 C -0.21 -2.43 9.04 -39.43 -0.36 -2.79 16 24 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 25 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 28 H 0.13 1.51 6.91 -52.48 -0.36 1.15 16 29 H 0.04 0.62 7.90 -51.93 -0.41 0.20 16 30 H 0.08 1.07 8.01 -51.93 -0.42 0.66 16 31 H 0.04 0.69 5.49 -51.93 -0.29 0.41 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.33 8.04 -51.93 -0.42 0.91 16 34 H 0.06 1.21 7.14 -51.93 -0.37 0.84 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.04 0.86 7.65 -51.93 -0.40 0.47 16 38 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.12 1.15 6.30 -52.49 -0.33 0.82 16 LS Contribution 311.68 15.07 4.70 4.70 Total: -1.00 -30.66 311.68 -8.43 -39.08 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -5.82 Total: -0.23 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -2.12 Total: -19.44 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.42 Total: -37.27 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: -0.20 Total: -3.86 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.56 Total: 17.02 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.66 -8.43 -39.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397605001.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.502 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds