Wall clock time and date at job start Mon Mar 30 2020 06:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35894 * 117.00295 * 2 1 4 4 C 1.38729 * 120.05985 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.95010 * 180.02562 * 4 3 2 6 6 C 1.38271 * 120.05204 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94071 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.47005 * 90.00163 * 7 6 5 9 9 C 1.47446 * 110.99928 * 290.11944 * 8 7 6 10 10 C 1.54316 * 107.37138 * 236.66596 * 9 8 7 11 11 C 1.55397 * 102.90164 * 337.89323 * 10 9 8 12 12 H 1.08998 * 110.86886 * 277.39394 * 11 10 9 13 13 C 1.50695 * 111.05584 * 153.65298 * 11 10 9 14 14 H 1.08002 * 119.99749 * 272.85799 * 13 11 10 15 15 C 1.37875 * 120.00231 * 92.87182 * 13 11 10 16 16 N 1.31516 * 120.00428 * 179.18076 * 15 13 11 17 17 Si 1.86796 * 119.99804 * 359.17105 * 15 13 11 18 18 H 1.48504 * 109.47074 * 84.86441 * 17 15 13 19 19 H 1.48502 * 109.47205 * 204.86018 * 17 15 13 20 20 H 1.48500 * 109.47423 * 324.86099 * 17 15 13 21 21 C 1.47848 * 111.00093 * 169.27999 * 8 7 6 22 22 C 1.38271 * 120.11144 * 0.24481 * 6 5 4 23 23 C 1.38146 * 120.05272 * 359.46046 * 22 6 5 24 24 H 1.09002 * 109.46612 * 300.00256 * 1 2 3 25 25 H 1.09004 * 109.46969 * 59.99872 * 1 2 3 26 26 H 1.09005 * 109.47160 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.02398 * 0.04359 * 4 3 2 28 28 H 1.08004 * 119.97663 * 179.97438 * 5 4 3 29 29 H 1.08992 * 109.47354 * 329.99377 * 7 6 5 30 30 H 1.09005 * 109.46918 * 209.99270 * 7 6 5 31 31 H 1.09002 * 109.88582 * 356.15464 * 9 8 7 32 32 H 1.09002 * 109.89041 * 117.17485 * 9 8 7 33 33 H 1.08999 * 110.70846 * 96.18151 * 10 9 8 34 34 H 1.09003 * 110.70424 * 219.41330 * 10 9 8 35 35 H 0.96996 * 120.00407 * 179.97438 * 16 15 13 36 36 H 1.08993 * 110.37260 * 265.19217 * 21 8 7 37 37 H 1.09001 * 110.36823 * 27.53147 * 21 8 7 38 38 H 1.07998 * 119.96638 * 179.70763 * 22 6 5 39 39 H 1.07999 * 120.02312 * 180.29714 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 0.0016 7 6 3.9863 5.0184 0.0028 8 7 4.2080 5.4562 -1.3818 9 6 5.2365 4.6292 -2.0392 10 6 6.3439 5.5813 -2.5376 11 6 5.6097 6.9475 -2.6334 12 1 5.0607 7.0284 -3.5716 13 6 6.5756 8.0935 -2.4759 14 1 6.8179 8.4639 -1.4908 15 6 7.1497 8.6692 -3.5895 16 7 7.9802 9.6798 -3.4531 17 14 6.7481 8.0136 -5.2919 18 1 5.4966 8.6447 -5.7828 19 1 7.8614 8.3338 -6.2210 20 1 6.5668 6.5412 -5.2253 21 6 4.6399 6.8694 -1.4280 22 6 1.9211 3.6047 0.0078 23 6 1.2916 2.3750 0.0011 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 4.0209 0.3798 -0.0017 28 1 5.1347 2.5749 0.0000 29 1 4.9443 4.9375 0.5161 30 1 3.3584 5.7457 0.5176 31 1 5.6524 3.9180 -1.3255 32 1 4.7994 4.0949 -2.8828 33 1 7.1607 5.6329 -1.8177 34 1 6.7099 5.2683 -3.5155 35 1 8.3844 10.0845 -4.2364 36 1 3.7826 7.5232 -1.5876 37 1 5.1571 7.1383 -0.5069 38 1 1.3344 4.5114 0.0138 39 1 0.2130 2.3202 0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397605001.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:13 Heat of formation + Delta-G solvation = -30.047299 kcal Electronic energy + Delta-G solvation = -19115.276528 eV Core-core repulsion = 16215.037429 eV Total energy + Delta-G solvation = -2900.239098 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.12606 -39.90340 -38.24764 -35.10852 -33.43512 -32.03365 -30.82298 -30.08668 -28.35696 -26.75062 -25.27194 -23.63343 -22.31300 -21.39864 -21.15743 -19.14909 -19.00828 -17.26526 -16.94398 -16.60063 -16.46920 -16.25892 -15.77797 -15.20951 -14.88299 -14.71874 -14.43107 -14.19554 -13.89503 -13.77948 -13.50135 -13.05640 -12.86876 -12.80296 -12.63890 -12.20642 -12.05089 -11.89392 -11.72688 -11.68932 -11.57929 -11.35406 -11.11157 -10.68944 -9.90360 -9.24571 -8.99131 -8.29582 -6.33070 0.42731 0.47423 1.36324 1.37556 1.49157 2.35727 2.41487 2.74604 3.04820 3.35793 3.84047 3.93516 3.97927 4.02738 4.17163 4.30993 4.39650 4.41859 4.44813 4.50361 4.56566 4.62284 4.72970 4.77699 4.80294 4.83746 4.93758 5.09792 5.13707 5.18181 5.33542 5.42050 5.42858 5.53418 5.64735 5.73962 5.84030 6.07637 6.26400 6.33405 6.48753 6.72578 7.32517 8.86980 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.043396 B = 0.003840 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.066887 B = 7290.059109 C = 7428.871350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.112 3.888 4 C -0.163 4.163 5 C -0.079 4.079 6 C -0.117 4.117 7 C 0.093 3.907 8 N -0.529 5.529 9 C 0.050 3.950 10 C -0.141 4.141 11 C 0.006 3.994 12 H 0.038 0.962 13 C -0.510 4.510 14 H 0.032 0.968 15 C 0.012 3.988 16 N -0.950 5.950 17 Si 0.943 3.057 18 H -0.268 1.268 19 H -0.289 1.289 20 H -0.244 1.244 21 C 0.062 3.938 22 C -0.067 4.067 23 C -0.209 4.209 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.118 0.882 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.266 0.734 36 H 0.072 0.928 37 H 0.033 0.967 38 H 0.135 0.865 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.252 -19.124 6.807 25.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.066 3.934 4 C -0.181 4.181 5 C -0.098 4.098 6 C -0.117 4.117 7 C -0.035 4.035 8 N -0.253 5.253 9 C -0.077 4.077 10 C -0.180 4.180 11 C -0.013 4.013 12 H 0.057 0.943 13 C -0.548 4.548 14 H 0.051 0.949 15 C -0.185 4.185 16 N -0.590 5.590 17 Si 0.767 3.233 18 H -0.193 1.193 19 H -0.215 1.215 20 H -0.168 1.168 21 C -0.065 4.065 22 C -0.085 4.085 23 C -0.227 4.227 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.137 0.863 27 H 0.155 0.845 28 H 0.150 0.850 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.153 0.847 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -15.548 -19.251 6.473 25.578 hybrid contribution 0.942 0.609 -0.301 1.161 sum -14.606 -18.641 6.172 24.473 Atomic orbital electron populations 1.23323 0.76597 1.05469 1.02177 1.86031 1.23371 1.26846 1.88803 1.19195 0.92602 0.84675 0.96892 1.20549 0.91845 0.98750 1.06972 1.21025 1.00158 0.91144 0.97453 1.19721 0.94195 0.94295 1.03526 1.21141 0.98922 0.94005 0.89396 1.63680 1.43289 1.02538 1.15827 1.22797 0.90906 0.95254 0.98790 1.23057 0.97931 0.96713 1.00297 1.20191 0.93310 0.92660 0.95185 0.94347 1.21155 1.24943 1.15423 0.93273 0.94933 1.25920 0.94465 0.94569 1.03532 1.70046 1.32274 1.25157 1.31559 0.85810 0.77890 0.80632 0.78929 1.19319 1.21510 1.16781 1.22869 0.97255 0.88580 0.97800 1.20999 0.93754 0.97776 0.96018 1.21424 1.01002 0.91732 1.08561 0.91689 0.92010 0.86344 0.84469 0.84971 0.94189 0.89604 0.91771 0.91196 0.93062 0.92434 0.92518 0.90971 0.94902 0.84692 0.83442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -6.83 10.50 -92.36 -0.97 -7.80 16 3 C 0.11 2.50 6.69 22.51 0.15 2.65 16 4 C -0.16 -3.72 9.99 22.36 0.22 -3.50 16 5 C -0.08 -1.89 8.73 22.25 0.19 -1.70 16 6 C -0.12 -2.96 5.11 -19.85 -0.10 -3.06 16 7 C 0.09 2.61 4.75 85.56 0.41 3.02 16 8 N -0.53 -17.93 5.15 -890.10 -4.58 -22.51 16 9 C 0.05 1.69 6.25 86.64 0.54 2.23 16 10 C -0.14 -5.76 6.29 31.86 0.20 -5.56 16 11 C 0.01 0.28 2.38 -10.07 -0.02 0.26 16 12 H 0.04 1.80 6.01 -2.39 -0.01 1.78 16 13 C -0.51 -28.89 8.98 25.60 0.23 -28.66 16 14 H 0.03 2.04 8.00 -2.91 -0.02 2.02 16 15 C 0.01 0.71 5.47 84.65 0.46 1.17 16 16 N -0.95 -59.38 13.96 21.45 0.30 -59.08 16 17 Si 0.94 44.38 26.81 68.60 1.84 46.21 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 20 H -0.24 -10.65 6.09 99.48 0.61 -10.05 16 21 C 0.06 2.48 6.14 86.77 0.53 3.02 16 22 C -0.07 -1.53 9.69 22.26 0.22 -1.31 16 23 C -0.21 -4.29 9.04 22.37 0.20 -4.08 16 24 H 0.06 0.62 7.66 -2.39 -0.02 0.60 16 25 H 0.06 0.64 7.66 -2.38 -0.02 0.62 16 26 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 28 H 0.13 2.90 6.91 -2.91 -0.02 2.88 16 29 H 0.04 1.14 7.90 -2.39 -0.02 1.12 16 30 H 0.09 2.24 8.01 -2.38 -0.02 2.22 16 31 H 0.06 1.90 5.49 -2.39 -0.01 1.88 16 32 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 33 H 0.05 2.17 8.04 -2.39 -0.02 2.15 16 34 H 0.06 2.32 7.14 -2.39 -0.02 2.30 16 35 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 36 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 37 H 0.03 1.35 7.65 -2.39 -0.02 1.33 16 38 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 39 H 0.15 2.23 6.30 -2.91 -0.02 2.21 16 Total: -1.00 -66.31 311.68 1.86 -64.45 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.93 Total: 12.93 kcal Atomic # 6 Polarization: -38.54 SS G_CDS: 4.35 Total: -34.19 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -4.28 Total: -81.60 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.97 Total: -7.80 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.84 Total: 46.21 kcal Total: -66.31 1.86 -64.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397605001.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.402 kcal (2) G-P(sol) polarization free energy of solvation -66.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds