Wall clock time and date at job start Mon Mar 30 2020 06:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 110.67813 * 2 1 4 4 O 1.44379 * 110.61392 * 122.96512 * 2 1 3 5 5 C 1.43743 * 106.97391 * 158.56247 * 4 2 1 6 6 C 1.54099 * 107.29495 * 333.48319 * 5 4 2 7 7 C 1.54811 * 104.18713 * 2.03270 * 6 5 4 8 8 H 1.09009 * 110.90764 * 262.64933 * 7 6 5 9 9 N 1.46897 * 110.91249 * 139.08136 * 7 6 5 10 10 C 1.46891 * 111.00358 * 86.45002 * 9 7 6 11 11 C 1.50699 * 109.47592 * 180.02562 * 10 9 7 12 12 C 1.38639 * 119.74681 * 269.73219 * 11 10 9 13 13 C 1.37622 * 120.24531 * 179.76044 * 12 11 10 14 14 C 1.40716 * 119.74601 * 0.52682 * 13 12 11 15 15 C 1.41398 * 120.24523 * 179.74536 * 14 13 12 16 16 H 1.07992 * 120.00085 * 204.36091 * 15 14 13 17 17 C 1.39948 * 119.99541 * 24.36195 * 15 14 13 18 18 N 1.30818 * 120.00594 * 17.87115 * 17 15 14 19 19 Si 1.86806 * 119.99496 * 197.87061 * 17 15 14 20 20 H 1.48496 * 109.47111 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46751 * 120.00209 * 19 17 15 22 22 H 1.48493 * 109.46835 * 239.99874 * 19 17 15 23 23 C 1.40716 * 119.51089 * 359.72639 * 14 13 12 24 24 C 1.37618 * 119.74518 * 359.97438 * 23 14 13 25 25 H 1.08999 * 109.46970 * 298.49685 * 1 2 3 26 26 H 1.09007 * 109.46443 * 58.49178 * 1 2 3 27 27 H 1.09000 * 109.47108 * 178.48891 * 1 2 3 28 28 H 1.08998 * 109.88462 * 92.90596 * 5 4 2 29 29 H 1.09000 * 109.88256 * 213.91029 * 5 4 2 30 30 H 1.08997 * 110.49125 * 120.70734 * 6 5 4 31 31 H 1.09002 * 110.49193 * 243.22374 * 6 5 4 32 32 H 1.00909 * 110.99299 * 322.49926 * 9 7 6 33 33 H 1.09003 * 109.47600 * 300.00242 * 10 9 7 34 34 H 1.09001 * 109.47185 * 59.99998 * 10 9 7 35 35 H 1.08000 * 119.87641 * 359.97438 * 12 11 10 36 36 H 1.08000 * 120.12354 * 180.22580 * 13 12 11 37 37 H 0.96996 * 120.00172 * 180.02562 * 18 17 15 38 38 H 1.07999 * 120.12608 * 179.97438 * 23 14 13 39 39 H 1.07995 * 119.87614 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9150 1.0198 0.0000 4 8 2.0384 -0.7353 1.1338 5 6 3.3839 -1.1254 0.8119 6 6 3.4795 -1.2168 -0.7234 7 6 2.0759 -0.7894 -1.2171 8 1 1.4551 -1.6607 -1.4264 9 7 2.1771 0.0754 -2.4002 10 6 2.2472 -0.7228 -3.6314 11 6 2.3506 0.1965 -4.8210 12 6 1.1975 0.6369 -5.4523 13 6 1.2799 1.4805 -6.5365 14 6 2.5408 1.8870 -7.0106 15 6 2.6378 2.7492 -8.1271 16 1 3.5347 2.7549 -8.7287 17 6 1.5716 3.5954 -8.4524 18 7 0.6483 3.8559 -7.5630 19 14 1.4669 4.3528 -10.1568 20 1 2.6251 3.9033 -10.9702 21 1 0.2056 3.9234 -10.8125 22 1 1.4863 5.8332 -10.0426 23 6 3.7045 1.4294 -6.3653 24 6 3.5982 0.5913 -5.2790 25 1 -0.3633 0.4903 0.9032 26 1 -0.3632 0.5371 -0.8762 27 1 -0.3633 -1.0273 -0.0271 28 1 4.0854 -0.3783 1.1831 29 1 3.6053 -2.0952 1.2576 30 1 4.2407 -0.5334 -1.0996 31 1 3.6998 -2.2388 -1.0319 32 1 2.9684 0.6973 -2.3269 33 1 3.1237 -1.3699 -3.5955 34 1 1.3485 -1.3331 -3.7204 35 1 0.2310 0.3195 -5.0897 36 1 0.3802 1.8253 -7.0245 37 1 -0.0908 4.4420 -7.7886 38 1 4.6774 1.7348 -6.7211 39 1 4.4899 0.2385 -4.7823 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398985636.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:19 Heat of formation + Delta-G solvation = -38.869484 kcal Electronic energy + Delta-G solvation = -18989.008494 eV Core-core repulsion = 16088.386837 eV Total energy + Delta-G solvation = -2900.621657 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.68347 -37.71294 -35.42279 -33.63158 -31.56333 -31.19399 -29.44107 -29.12776 -26.52047 -24.84902 -23.03481 -21.76417 -21.03985 -20.81203 -19.83725 -17.30782 -16.48064 -16.20919 -15.35806 -15.26753 -14.66483 -14.16427 -14.08024 -13.81261 -13.52255 -13.14890 -12.61937 -12.53431 -12.30232 -11.99014 -11.91982 -11.82191 -11.54153 -11.31832 -11.16270 -10.97535 -10.92152 -10.74714 -10.47138 -10.37176 -9.73867 -9.56359 -9.38223 -9.13901 -8.10277 -7.45373 -7.31978 -6.77009 -4.36169 2.72114 3.05939 3.07474 3.11673 3.15745 3.83286 3.92243 4.31875 4.55517 4.67684 4.86393 4.91143 5.13588 5.24190 5.45283 5.53141 5.57724 5.69370 5.72848 5.82220 5.87317 5.90847 5.91962 6.09352 6.22915 6.27356 6.33241 6.43306 6.83968 6.95052 7.06284 7.28332 7.34260 7.36503 7.60181 7.65532 7.87475 8.05140 8.13542 8.29398 8.64102 8.88798 8.97101 10.17204 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.039352 B = 0.003740 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.356546 B = 7484.494944 C = 7883.017054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.081 3.919 3 H 0.073 0.927 4 O -0.381 6.381 5 C 0.052 3.948 6 C -0.190 4.190 7 C 0.060 3.940 8 H 0.091 0.909 9 N -0.669 5.669 10 C 0.127 3.873 11 C -0.216 4.216 12 C -0.078 4.078 13 C -0.168 4.168 14 C 0.113 3.887 15 C -0.463 4.463 16 H 0.077 0.923 17 C 0.076 3.924 18 N -0.790 5.790 19 Si 0.906 3.094 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.275 1.275 23 C -0.228 4.228 24 C -0.085 4.085 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.342 0.658 33 H 0.019 0.981 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.280 0.720 38 H 0.090 0.910 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.532 -6.643 10.086 12.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.023 3.977 3 H 0.091 0.909 4 O -0.300 6.300 5 C -0.025 4.025 6 C -0.230 4.230 7 C -0.051 4.051 8 H 0.109 0.891 9 N -0.300 5.300 10 C -0.001 4.001 11 C -0.218 4.218 12 C -0.097 4.097 13 C -0.187 4.187 14 C 0.110 3.890 15 C -0.493 4.493 16 H 0.095 0.905 17 C -0.142 4.142 18 N -0.415 5.415 19 Si 0.731 3.269 20 H -0.184 1.184 21 H -0.197 1.197 22 H -0.200 1.200 23 C -0.248 4.248 24 C -0.104 4.104 25 H 0.076 0.924 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.161 0.839 33 H 0.037 0.963 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.135 0.865 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.518 -6.444 10.267 12.133 hybrid contribution 1.087 0.154 -0.833 1.378 sum 1.605 -6.290 9.435 11.452 Atomic orbital electron populations 1.21693 0.92728 1.02466 1.02622 1.23085 0.95540 0.95251 0.83840 0.90942 1.88869 1.27639 1.73994 1.39486 1.22990 0.84912 1.00060 0.94587 1.23702 0.99760 1.03037 0.96480 1.23226 0.94292 0.95956 0.91627 0.89126 1.60596 1.49168 1.19830 1.00424 1.20572 0.98769 0.93461 0.87290 1.18881 0.93463 1.08652 1.00785 1.20500 0.95592 0.97522 0.96101 1.21316 0.98307 1.00125 0.98958 1.17630 0.91036 0.89444 0.90875 1.19636 1.01174 1.18089 1.10364 0.90473 1.25912 0.94605 0.95435 0.98231 1.69837 1.10165 1.27985 1.33533 0.86296 0.79369 0.78855 0.82413 1.18421 1.19688 1.19991 1.20927 0.97269 1.06583 0.99994 1.20344 0.94849 0.98214 0.96953 0.92414 0.90094 0.92399 0.92652 0.90245 0.90585 0.90665 0.83855 0.96278 0.91924 0.89461 0.86516 0.90902 0.89191 0.90008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.66 37.16 0.36 -1.29 16 2 C 0.08 1.04 3.67 -25.67 -0.09 0.94 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 O -0.38 -5.07 11.22 -35.23 -0.40 -5.47 16 5 C 0.05 0.56 7.70 37.73 0.29 0.85 16 6 C -0.19 -2.11 6.67 -25.20 -0.17 -2.28 16 7 C 0.06 0.78 2.84 -65.71 -0.19 0.59 16 8 H 0.09 1.19 7.82 -51.92 -0.41 0.78 16 9 N -0.67 -10.27 6.36 -105.88 -0.67 -10.94 16 10 C 0.13 2.14 5.67 -4.98 -0.03 2.11 16 11 C -0.22 -4.55 5.42 -104.33 -0.56 -5.12 16 12 C -0.08 -1.81 9.67 -39.66 -0.38 -2.19 16 13 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 14 C 0.11 2.99 5.58 -106.82 -0.60 2.39 16 15 C -0.46 -12.26 9.05 -37.74 -0.34 -12.60 16 16 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 17 C 0.08 1.90 5.14 -17.34 -0.09 1.82 16 18 N -0.79 -20.38 10.95 55.55 0.61 -19.77 16 19 Si 0.91 18.54 29.60 -169.99 -5.03 13.51 16 20 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 C -0.23 -5.54 9.80 -38.87 -0.38 -5.92 16 24 C -0.08 -1.84 9.67 -39.66 -0.38 -2.23 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.84 7.63 -51.93 -0.40 0.45 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.34 5.30 8.19 -39.29 -0.32 4.98 16 33 H 0.02 0.30 8.08 -51.93 -0.42 -0.12 16 34 H 0.06 1.03 8.03 -51.93 -0.42 0.62 16 35 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 36 H 0.12 3.13 6.16 -52.49 -0.32 2.80 16 37 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 38 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 39 H 0.08 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 321.92 15.07 4.85 4.85 Total: -1.00 -26.99 321.92 -9.60 -36.60 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -6.06 Total: 8.82 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: -2.90 Total: -27.60 kcal Atomic # 7 Polarization: -30.65 SS G_CDS: -0.06 Total: -30.71 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.40 Total: -5.47 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -26.99 -9.60 -36.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398985636.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.272 kcal (2) G-P(sol) polarization free energy of solvation -26.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds