Wall clock time and date at job start Mon Mar 30 2020 06:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 110.67813 * 2 1 4 4 O 1.44379 * 110.61392 * 122.96512 * 2 1 3 5 5 C 1.43743 * 106.97391 * 158.56247 * 4 2 1 6 6 C 1.54099 * 107.29495 * 333.48319 * 5 4 2 7 7 C 1.54811 * 104.18713 * 2.03270 * 6 5 4 8 8 H 1.09009 * 110.90764 * 262.64933 * 7 6 5 9 9 N 1.46897 * 110.91249 * 139.08136 * 7 6 5 10 10 C 1.46891 * 111.00358 * 86.45002 * 9 7 6 11 11 C 1.50699 * 109.47592 * 180.02562 * 10 9 7 12 12 C 1.38639 * 119.74681 * 269.73219 * 11 10 9 13 13 C 1.37622 * 120.24531 * 179.76044 * 12 11 10 14 14 C 1.40716 * 119.74601 * 0.52682 * 13 12 11 15 15 C 1.41398 * 120.24523 * 179.74536 * 14 13 12 16 16 H 1.07992 * 120.00085 * 204.36091 * 15 14 13 17 17 C 1.39948 * 119.99541 * 24.36195 * 15 14 13 18 18 N 1.30818 * 120.00594 * 17.87115 * 17 15 14 19 19 Si 1.86806 * 119.99496 * 197.87061 * 17 15 14 20 20 H 1.48496 * 109.47111 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46751 * 120.00209 * 19 17 15 22 22 H 1.48493 * 109.46835 * 239.99874 * 19 17 15 23 23 C 1.40716 * 119.51089 * 359.72639 * 14 13 12 24 24 C 1.37618 * 119.74518 * 359.97438 * 23 14 13 25 25 H 1.08999 * 109.46970 * 298.49685 * 1 2 3 26 26 H 1.09007 * 109.46443 * 58.49178 * 1 2 3 27 27 H 1.09000 * 109.47108 * 178.48891 * 1 2 3 28 28 H 1.08998 * 109.88462 * 92.90596 * 5 4 2 29 29 H 1.09000 * 109.88256 * 213.91029 * 5 4 2 30 30 H 1.08997 * 110.49125 * 120.70734 * 6 5 4 31 31 H 1.09002 * 110.49193 * 243.22374 * 6 5 4 32 32 H 1.00909 * 110.99299 * 322.49926 * 9 7 6 33 33 H 1.09003 * 109.47600 * 300.00242 * 10 9 7 34 34 H 1.09001 * 109.47185 * 59.99998 * 10 9 7 35 35 H 1.08000 * 119.87641 * 359.97438 * 12 11 10 36 36 H 1.08000 * 120.12354 * 180.22580 * 13 12 11 37 37 H 0.96996 * 120.00172 * 180.02562 * 18 17 15 38 38 H 1.07999 * 120.12608 * 179.97438 * 23 14 13 39 39 H 1.07995 * 119.87614 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9150 1.0198 0.0000 4 8 2.0384 -0.7353 1.1338 5 6 3.3839 -1.1254 0.8119 6 6 3.4795 -1.2168 -0.7234 7 6 2.0759 -0.7894 -1.2171 8 1 1.4551 -1.6607 -1.4264 9 7 2.1771 0.0754 -2.4002 10 6 2.2472 -0.7228 -3.6314 11 6 2.3506 0.1965 -4.8210 12 6 1.1975 0.6369 -5.4523 13 6 1.2799 1.4805 -6.5365 14 6 2.5408 1.8870 -7.0106 15 6 2.6378 2.7492 -8.1271 16 1 3.5347 2.7549 -8.7287 17 6 1.5716 3.5954 -8.4524 18 7 0.6483 3.8559 -7.5630 19 14 1.4669 4.3528 -10.1568 20 1 2.6251 3.9033 -10.9702 21 1 0.2056 3.9234 -10.8125 22 1 1.4863 5.8332 -10.0426 23 6 3.7045 1.4294 -6.3653 24 6 3.5982 0.5913 -5.2790 25 1 -0.3633 0.4903 0.9032 26 1 -0.3632 0.5371 -0.8762 27 1 -0.3633 -1.0273 -0.0271 28 1 4.0854 -0.3783 1.1831 29 1 3.6053 -2.0952 1.2576 30 1 4.2407 -0.5334 -1.0996 31 1 3.6998 -2.2388 -1.0319 32 1 2.9684 0.6973 -2.3269 33 1 3.1237 -1.3699 -3.5955 34 1 1.3485 -1.3331 -3.7204 35 1 0.2310 0.3195 -5.0897 36 1 0.3802 1.8253 -7.0245 37 1 -0.0908 4.4420 -7.7886 38 1 4.6774 1.7348 -6.7211 39 1 4.4899 0.2385 -4.7823 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398985636.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:18 Heat of formation + Delta-G solvation = -54.308180 kcal Electronic energy + Delta-G solvation = -18989.677966 eV Core-core repulsion = 16088.386837 eV Total energy + Delta-G solvation = -2901.291129 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.68174 -39.46641 -36.78260 -35.35264 -32.74526 -32.37299 -31.18165 -30.69315 -28.04295 -26.08937 -24.51275 -22.89539 -22.66028 -21.94310 -21.51957 -19.20515 -17.48700 -17.35982 -17.11197 -16.28777 -15.91792 -15.71019 -15.55345 -15.29397 -14.71834 -14.55296 -14.22782 -13.79534 -13.60997 -13.45678 -13.25959 -13.21437 -12.85780 -12.75538 -12.64514 -12.30809 -12.16962 -12.14919 -11.94500 -11.67378 -11.35182 -11.20909 -10.99330 -10.63451 -9.35877 -9.32316 -9.10998 -8.62269 -6.32027 0.96018 1.17653 1.38324 1.49906 1.53655 2.21370 2.68213 2.90841 3.30187 3.63482 3.80097 3.94413 4.00007 4.18157 4.26050 4.34812 4.38022 4.50049 4.57572 4.64828 4.69644 4.74281 4.85287 4.88638 4.99170 5.02298 5.09104 5.13017 5.17730 5.31709 5.41169 5.48817 5.73514 5.85560 5.98250 6.12324 6.18397 6.30042 6.41566 6.48799 6.73688 6.96371 7.06657 8.34483 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.039352 B = 0.003740 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.356546 B = 7484.494944 C = 7883.017054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.080 3.920 3 H 0.066 0.934 4 O -0.396 6.396 5 C 0.048 3.952 6 C -0.184 4.184 7 C 0.063 3.937 8 H 0.092 0.908 9 N -0.678 5.678 10 C 0.135 3.865 11 C -0.201 4.201 12 C -0.085 4.085 13 C -0.192 4.192 14 C 0.079 3.921 15 C -0.504 4.504 16 H 0.073 0.927 17 C 0.035 3.965 18 N -0.825 5.825 19 Si 0.981 3.019 20 H -0.259 1.259 21 H -0.264 1.264 22 H -0.266 1.266 23 C -0.245 4.245 24 C -0.084 4.084 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.342 0.658 33 H 0.038 0.962 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.287 0.713 38 H 0.094 0.906 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.157 -7.706 11.060 13.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.022 3.978 3 H 0.084 0.916 4 O -0.315 6.315 5 C -0.029 4.029 6 C -0.223 4.223 7 C -0.048 4.048 8 H 0.110 0.890 9 N -0.309 5.309 10 C 0.007 3.993 11 C -0.202 4.202 12 C -0.104 4.104 13 C -0.212 4.212 14 C 0.077 3.923 15 C -0.533 4.533 16 H 0.091 0.909 17 C -0.179 4.179 18 N -0.451 5.451 19 Si 0.801 3.199 20 H -0.182 1.182 21 H -0.189 1.189 22 H -0.190 1.190 23 C -0.264 4.264 24 C -0.102 4.102 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.115 0.885 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.161 0.839 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.152 -7.520 11.263 13.591 hybrid contribution 0.926 0.381 -0.958 1.386 sum 2.079 -7.139 10.305 12.708 Atomic orbital electron populations 1.21666 0.92384 1.02727 1.02537 1.23059 0.95906 0.94934 0.83903 0.91635 1.88857 1.28935 1.74064 1.39684 1.23165 0.83951 1.01273 0.94529 1.23647 0.98380 1.03745 0.96567 1.23194 0.95639 0.95505 0.90499 0.88970 1.60455 1.49417 1.20310 1.00707 1.20461 1.00041 0.92655 0.86136 1.19327 0.92412 1.07283 1.01183 1.20745 0.97255 0.96976 0.95447 1.21272 0.97557 1.01854 1.00494 1.17969 0.92044 0.90465 0.91832 1.19868 1.02190 1.19740 1.11521 0.90880 1.26742 0.93769 0.95434 1.01994 1.69890 1.10906 1.28870 1.35436 0.85185 0.79429 0.78124 0.77114 1.18225 1.18889 1.19047 1.21151 0.96878 1.07430 1.00957 1.20687 0.96503 0.97074 0.95949 0.91811 0.90937 0.91902 0.91845 0.88506 0.90371 0.89436 0.83893 0.94357 0.91259 0.88024 0.88511 0.90221 0.88778 0.86617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.66 71.98 0.70 -2.37 16 2 C 0.08 1.91 3.67 31.28 0.11 2.02 16 3 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 4 O -0.40 -9.66 11.22 -148.98 -1.67 -11.33 16 5 C 0.05 0.89 7.70 72.35 0.56 1.45 16 6 C -0.18 -3.49 6.67 31.58 0.21 -3.28 16 7 C 0.06 1.45 2.84 46.22 0.13 1.58 16 8 H 0.09 2.14 7.82 -2.38 -0.02 2.12 16 9 N -0.68 -19.13 6.36 -488.88 -3.11 -22.23 16 10 C 0.13 4.15 5.67 85.56 0.48 4.64 16 11 C -0.20 -8.10 5.42 -19.67 -0.11 -8.21 16 12 C -0.09 -3.93 9.67 22.22 0.21 -3.72 16 13 C -0.19 -10.24 8.70 22.73 0.20 -10.04 16 14 C 0.08 4.33 5.58 -21.29 -0.12 4.21 16 15 C -0.50 -27.66 9.05 23.46 0.21 -27.44 16 16 H 0.07 3.89 7.91 -2.91 -0.02 3.86 16 17 C 0.04 1.81 5.14 85.26 0.44 2.25 16 18 N -0.82 -43.92 10.95 21.83 0.24 -43.68 16 19 Si 0.98 38.68 29.60 68.60 2.03 40.71 16 20 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 21 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 22 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 23 C -0.24 -11.96 9.80 22.73 0.22 -11.74 16 24 C -0.08 -3.50 9.67 22.22 0.21 -3.28 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.47 7.63 -2.39 -0.02 1.45 16 31 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.34 9.75 8.19 -89.69 -0.73 9.01 16 33 H 0.04 1.06 8.08 -2.39 -0.02 1.04 16 34 H 0.07 2.07 8.03 -2.39 -0.02 2.05 16 35 H 0.10 4.28 8.06 -2.91 -0.02 4.26 16 36 H 0.10 5.44 6.16 -2.91 -0.02 5.43 16 37 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 38 H 0.09 4.38 8.06 -2.91 -0.02 4.36 16 39 H 0.12 4.03 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -59.05 321.92 1.25 -57.79 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: 0.29 Total: 32.67 kcal Atomic # 6 Polarization: -57.40 SS G_CDS: 3.47 Total: -53.93 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: -2.87 Total: -65.91 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -1.67 Total: -11.33 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -59.05 1.25 -57.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398985636.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.484 kcal (2) G-P(sol) polarization free energy of solvation -59.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds