Wall clock time and date at job start Mon Mar 30 2020 06:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.99165 * 2 1 4 4 O 1.43744 * 109.88211 * 238.91406 * 2 1 3 5 5 C 1.44377 * 106.97877 * 214.06428 * 4 2 1 6 6 C 1.54991 * 103.49144 * 40.05995 * 5 4 2 7 7 C 1.54101 * 109.87958 * 121.08386 * 2 1 3 8 8 H 1.09000 * 110.48596 * 2.77757 * 7 2 1 9 9 N 1.46899 * 110.48839 * 240.26336 * 7 2 1 10 10 C 1.46901 * 110.99735 * 155.00120 * 9 7 2 11 11 C 1.50702 * 109.46759 * 179.97438 * 10 9 7 12 12 C 1.38638 * 119.74987 * 269.72448 * 11 10 9 13 13 C 1.37617 * 120.24827 * 179.72517 * 12 11 10 14 14 C 1.40721 * 119.74278 * 0.56833 * 13 12 11 15 15 C 1.41400 * 120.24014 * 179.68287 * 14 13 12 16 16 H 1.07999 * 119.99805 * 204.40309 * 15 14 13 17 17 C 1.39943 * 120.00013 * 24.40983 * 15 14 13 18 18 N 1.30822 * 120.00268 * 17.84554 * 17 15 14 19 19 Si 1.86801 * 119.99756 * 197.84244 * 17 15 14 20 20 H 1.48497 * 109.47047 * 60.00364 * 19 17 15 21 21 H 1.48504 * 109.46912 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47432 * 300.00152 * 19 17 15 23 23 C 1.40715 * 119.51261 * 359.70826 * 14 13 12 24 24 C 1.37615 * 119.74302 * 359.97438 * 23 14 13 25 25 H 1.09001 * 109.46961 * 298.91743 * 1 2 3 26 26 H 1.09002 * 109.47004 * 58.91363 * 1 2 3 27 27 H 1.08996 * 109.47273 * 178.91650 * 1 2 3 28 28 H 1.08996 * 110.61754 * 281.55925 * 5 4 2 29 29 H 1.09002 * 110.61704 * 158.56194 * 5 4 2 30 30 H 1.08997 * 110.90841 * 204.78271 * 6 5 4 31 31 H 1.09002 * 110.94059 * 81.18562 * 6 5 4 32 32 H 1.00897 * 111.00224 * 278.95090 * 9 7 2 33 33 H 1.09000 * 109.47254 * 299.99557 * 10 9 7 34 34 H 1.08995 * 109.47677 * 59.99839 * 10 9 7 35 35 H 1.07995 * 119.87191 * 359.97438 * 12 11 10 36 36 H 1.07998 * 120.12847 * 180.27987 * 13 12 11 37 37 H 0.96995 * 120.00208 * 180.02562 * 18 17 15 38 38 H 1.07998 * 120.12674 * 180.02562 * 23 14 13 39 39 H 1.08002 * 119.87061 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0189 -0.6979 -1.1576 5 6 3.2380 -1.3642 -0.7647 6 6 2.9196 -1.8915 0.6576 7 6 2.0540 -0.7482 1.2411 8 1 1.2246 -1.1548 1.8198 9 7 2.8707 0.1453 2.0733 10 6 2.8831 -0.3035 3.4721 11 6 3.7294 0.6350 4.2931 12 6 5.0841 0.3835 4.4470 13 6 5.8676 1.2368 5.1899 14 6 5.2864 2.3615 5.8043 15 6 6.0803 3.2414 6.5755 16 1 5.6241 3.8460 7.3454 17 6 7.4572 3.3290 6.3410 18 7 7.9587 2.8868 5.2166 19 14 8.5789 4.0775 7.6337 20 1 8.4782 3.2930 8.8905 21 1 9.9815 4.0526 7.1463 22 1 8.1690 5.4812 7.8921 23 6 3.9093 2.6036 5.6461 24 6 3.1464 1.7404 4.8933 25 1 -0.3633 0.4969 0.8995 26 1 -0.3633 0.5306 -0.8801 27 1 -0.3633 -1.0274 -0.0194 28 1 4.0685 -0.6589 -0.7355 29 1 3.4585 -2.1908 -1.4401 30 1 3.8332 -2.0224 1.2374 31 1 2.3541 -2.8222 0.6105 32 1 3.8088 0.2211 1.7096 33 1 1.8648 -0.3093 3.8608 34 1 3.2988 -1.3095 3.5273 35 1 5.5268 -0.4831 3.9787 36 1 6.9235 1.0415 5.3047 37 1 8.9131 2.9472 5.0543 38 1 3.4530 3.4640 6.1129 39 1 2.0893 1.9245 4.7701 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398985638.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:20 Heat of formation + Delta-G solvation = -38.459632 kcal Electronic energy + Delta-G solvation = -19033.663467 eV Core-core repulsion = 16133.059583 eV Total energy + Delta-G solvation = -2900.603884 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.73371 -37.70125 -35.34880 -33.62197 -31.63652 -31.12649 -29.42450 -29.14229 -26.50119 -24.78333 -23.10328 -21.96461 -21.05562 -20.66786 -19.80283 -17.30264 -16.37616 -16.03878 -15.56052 -15.28560 -14.60119 -14.23636 -14.18631 -13.80462 -13.34520 -13.14125 -12.76048 -12.52038 -12.32785 -11.97845 -11.92510 -11.77600 -11.44101 -11.23111 -11.16202 -11.02068 -10.96017 -10.86151 -10.45218 -10.37104 -9.67374 -9.57666 -9.40315 -9.14575 -8.12711 -7.46564 -7.31146 -6.77865 -4.36487 2.73344 3.04876 3.07134 3.08203 3.17794 3.86652 3.91552 4.32425 4.55514 4.67824 4.92777 4.95335 5.19419 5.23690 5.39794 5.52376 5.61699 5.66141 5.71452 5.79347 5.82396 5.91915 5.95769 6.08120 6.17125 6.26020 6.34653 6.40685 6.85556 6.93641 7.06235 7.25914 7.35833 7.38107 7.59830 7.67572 7.87787 8.04096 8.12436 8.29410 8.62633 8.88356 8.96661 10.16599 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.036716 B = 0.003802 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.417672 B = 7363.246241 C = 7675.804962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.077 3.923 3 H 0.081 0.919 4 O -0.381 6.381 5 C 0.049 3.951 6 C -0.187 4.187 7 C 0.057 3.943 8 H 0.088 0.912 9 N -0.674 5.674 10 C 0.126 3.874 11 C -0.217 4.217 12 C -0.095 4.095 13 C -0.167 4.167 14 C 0.113 3.887 15 C -0.464 4.464 16 H 0.077 0.923 17 C 0.077 3.923 18 N -0.792 5.792 19 Si 0.908 3.092 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.265 1.265 23 C -0.229 4.229 24 C -0.068 4.068 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.343 0.657 33 H 0.062 0.938 34 H 0.020 0.980 35 H 0.082 0.918 36 H 0.117 0.883 37 H 0.281 0.719 38 H 0.091 0.909 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.832 -7.213 -7.014 12.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.019 3.981 3 H 0.099 0.901 4 O -0.300 6.300 5 C -0.027 4.027 6 C -0.227 4.227 7 C -0.055 4.055 8 H 0.107 0.893 9 N -0.305 5.305 10 C -0.002 4.002 11 C -0.219 4.219 12 C -0.114 4.114 13 C -0.186 4.186 14 C 0.111 3.889 15 C -0.493 4.493 16 H 0.095 0.905 17 C -0.141 4.141 18 N -0.418 5.418 19 Si 0.732 3.268 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.190 1.190 23 C -0.248 4.248 24 C -0.087 4.087 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.162 0.838 33 H 0.080 0.920 34 H 0.038 0.962 35 H 0.100 0.900 36 H 0.134 0.866 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.219 -6.768 -7.249 12.267 hybrid contribution 1.375 -0.418 0.624 1.567 sum -5.844 -7.186 -6.625 11.388 Atomic orbital electron populations 1.21862 0.93812 1.02194 1.02415 1.22864 0.94766 0.96636 0.83839 0.90121 1.88847 1.39570 1.67900 1.33684 1.23462 0.88042 0.96224 0.94999 1.23833 1.01233 0.99967 0.97653 1.23025 0.96819 0.90860 0.94753 0.89334 1.60725 1.17835 1.49433 1.02470 1.20587 0.98616 0.94657 0.86320 1.18878 0.93862 1.00798 1.08328 1.20510 0.93099 0.98211 0.99568 1.21270 0.99551 0.95148 1.02625 1.17622 0.91117 0.90734 0.89470 1.19586 0.91998 1.20877 1.16843 0.90487 1.25906 0.99021 0.94041 0.95158 1.69818 1.14654 1.35934 1.21346 0.86380 0.78552 0.80275 0.81593 1.18836 1.20341 1.18982 1.20978 0.95269 1.01252 1.07345 1.20331 0.97146 0.94231 0.96947 0.91018 0.92153 0.92426 0.92070 0.89359 0.90203 0.90536 0.83795 0.91991 0.96215 0.90006 0.86558 0.90839 0.89094 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.36 37.16 0.35 -1.25 16 2 C 0.08 1.00 3.86 -26.16 -0.10 0.90 16 3 H 0.08 1.15 7.93 -51.93 -0.41 0.74 16 4 O -0.38 -5.19 11.19 -35.23 -0.39 -5.59 16 5 C 0.05 0.57 7.72 38.21 0.29 0.86 16 6 C -0.19 -2.13 6.63 -24.72 -0.16 -2.29 16 7 C 0.06 0.73 3.00 -66.18 -0.20 0.53 16 8 H 0.09 1.10 7.38 -51.93 -0.38 0.72 16 9 N -0.67 -10.48 6.17 -106.37 -0.66 -11.14 16 10 C 0.13 2.13 5.66 -4.97 -0.03 2.10 16 11 C -0.22 -4.59 5.41 -104.33 -0.56 -5.15 16 12 C -0.09 -2.15 9.67 -39.66 -0.38 -2.54 16 13 C -0.17 -4.28 8.70 -38.87 -0.34 -4.61 16 14 C 0.11 3.01 5.58 -106.82 -0.60 2.41 16 15 C -0.46 -12.29 9.05 -37.74 -0.34 -12.63 16 16 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 17 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 18 N -0.79 -20.37 10.95 55.55 0.61 -19.76 16 19 Si 0.91 18.55 29.60 -169.99 -5.03 13.52 16 20 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 23 C -0.23 -5.63 9.80 -38.87 -0.38 -6.01 16 24 C -0.07 -1.51 9.67 -39.66 -0.38 -1.89 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.92 7.98 -51.93 -0.41 0.51 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.34 5.52 8.39 -39.29 -0.33 5.19 16 33 H 0.06 1.01 8.02 -51.93 -0.42 0.59 16 34 H 0.02 0.32 8.08 -51.93 -0.42 -0.10 16 35 H 0.08 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.12 3.09 6.16 -52.49 -0.32 2.77 16 37 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 38 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 39 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 321.63 15.07 4.85 4.85 Total: -1.00 -27.06 321.63 -9.60 -36.66 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -6.05 Total: 9.21 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: -2.93 Total: -27.75 kcal Atomic # 7 Polarization: -30.85 SS G_CDS: -0.05 Total: -30.90 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.39 Total: -5.59 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.06 -9.60 -36.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398985638.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.800 kcal (2) G-P(sol) polarization free energy of solvation -27.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds