Wall clock time and date at job start Mon Mar 30 2020 06:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.99165 * 2 1 4 4 O 1.43744 * 109.88211 * 238.91406 * 2 1 3 5 5 C 1.44377 * 106.97877 * 214.06428 * 4 2 1 6 6 C 1.54991 * 103.49144 * 40.05995 * 5 4 2 7 7 C 1.54101 * 109.87958 * 121.08386 * 2 1 3 8 8 H 1.09000 * 110.48596 * 2.77757 * 7 2 1 9 9 N 1.46899 * 110.48839 * 240.26336 * 7 2 1 10 10 C 1.46901 * 110.99735 * 155.00120 * 9 7 2 11 11 C 1.50702 * 109.46759 * 179.97438 * 10 9 7 12 12 C 1.38638 * 119.74987 * 269.72448 * 11 10 9 13 13 C 1.37617 * 120.24827 * 179.72517 * 12 11 10 14 14 C 1.40721 * 119.74278 * 0.56833 * 13 12 11 15 15 C 1.41400 * 120.24014 * 179.68287 * 14 13 12 16 16 H 1.07999 * 119.99805 * 204.40309 * 15 14 13 17 17 C 1.39943 * 120.00013 * 24.40983 * 15 14 13 18 18 N 1.30822 * 120.00268 * 17.84554 * 17 15 14 19 19 Si 1.86801 * 119.99756 * 197.84244 * 17 15 14 20 20 H 1.48497 * 109.47047 * 60.00364 * 19 17 15 21 21 H 1.48504 * 109.46912 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47432 * 300.00152 * 19 17 15 23 23 C 1.40715 * 119.51261 * 359.70826 * 14 13 12 24 24 C 1.37615 * 119.74302 * 359.97438 * 23 14 13 25 25 H 1.09001 * 109.46961 * 298.91743 * 1 2 3 26 26 H 1.09002 * 109.47004 * 58.91363 * 1 2 3 27 27 H 1.08996 * 109.47273 * 178.91650 * 1 2 3 28 28 H 1.08996 * 110.61754 * 281.55925 * 5 4 2 29 29 H 1.09002 * 110.61704 * 158.56194 * 5 4 2 30 30 H 1.08997 * 110.90841 * 204.78271 * 6 5 4 31 31 H 1.09002 * 110.94059 * 81.18562 * 6 5 4 32 32 H 1.00897 * 111.00224 * 278.95090 * 9 7 2 33 33 H 1.09000 * 109.47254 * 299.99557 * 10 9 7 34 34 H 1.08995 * 109.47677 * 59.99839 * 10 9 7 35 35 H 1.07995 * 119.87191 * 359.97438 * 12 11 10 36 36 H 1.07998 * 120.12847 * 180.27987 * 13 12 11 37 37 H 0.96995 * 120.00208 * 180.02562 * 18 17 15 38 38 H 1.07998 * 120.12674 * 180.02562 * 23 14 13 39 39 H 1.08002 * 119.87061 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0189 -0.6979 -1.1576 5 6 3.2380 -1.3642 -0.7647 6 6 2.9196 -1.8915 0.6576 7 6 2.0540 -0.7482 1.2411 8 1 1.2246 -1.1548 1.8198 9 7 2.8707 0.1453 2.0733 10 6 2.8831 -0.3035 3.4721 11 6 3.7294 0.6350 4.2931 12 6 5.0841 0.3835 4.4470 13 6 5.8676 1.2368 5.1899 14 6 5.2864 2.3615 5.8043 15 6 6.0803 3.2414 6.5755 16 1 5.6241 3.8460 7.3454 17 6 7.4572 3.3290 6.3410 18 7 7.9587 2.8868 5.2166 19 14 8.5789 4.0775 7.6337 20 1 8.4782 3.2930 8.8905 21 1 9.9815 4.0526 7.1463 22 1 8.1690 5.4812 7.8921 23 6 3.9093 2.6036 5.6461 24 6 3.1464 1.7404 4.8933 25 1 -0.3633 0.4969 0.8995 26 1 -0.3633 0.5306 -0.8801 27 1 -0.3633 -1.0274 -0.0194 28 1 4.0685 -0.6589 -0.7355 29 1 3.4585 -2.1908 -1.4401 30 1 3.8332 -2.0224 1.2374 31 1 2.3541 -2.8222 0.6105 32 1 3.8088 0.2211 1.7096 33 1 1.8648 -0.3093 3.8608 34 1 3.2988 -1.3095 3.5273 35 1 5.5268 -0.4831 3.9787 36 1 6.9235 1.0415 5.3047 37 1 8.9131 2.9472 5.0543 38 1 3.4530 3.4640 6.1129 39 1 2.0893 1.9245 4.7701 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398985638.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:20 Heat of formation + Delta-G solvation = -53.912646 kcal Electronic energy + Delta-G solvation = -19034.333560 eV Core-core repulsion = 16133.059583 eV Total energy + Delta-G solvation = -2901.273977 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.75149 -39.46458 -36.72514 -35.33928 -32.78881 -32.32601 -31.17858 -30.70193 -28.03322 -26.01162 -24.53931 -22.99616 -22.87757 -21.78847 -21.46367 -19.20548 -17.52172 -17.19051 -16.94442 -16.54794 -15.94570 -15.77766 -15.54935 -15.35700 -14.90563 -14.26042 -14.10434 -13.79513 -13.73638 -13.54440 -13.20502 -13.13442 -12.85200 -12.68294 -12.64926 -12.36800 -12.14936 -12.04637 -11.93226 -11.78109 -11.33788 -11.24022 -10.99333 -10.65822 -9.42344 -9.28259 -9.14580 -8.63216 -6.32663 0.95859 1.17540 1.37701 1.48586 1.53246 2.20826 2.68711 2.93996 3.27762 3.62533 3.80008 3.94400 4.04514 4.19283 4.28697 4.35824 4.36276 4.48526 4.61221 4.64294 4.69979 4.75988 4.82324 4.85319 4.97905 5.02263 5.06431 5.15813 5.17141 5.28474 5.39353 5.49268 5.72583 5.84424 5.99168 6.11645 6.19318 6.27214 6.41606 6.46428 6.71987 6.95631 7.05797 8.33484 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.036716 B = 0.003802 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.417672 B = 7363.246241 C = 7675.804962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.075 3.925 3 H 0.061 0.939 4 O -0.396 6.396 5 C 0.044 3.956 6 C -0.180 4.180 7 C 0.059 3.941 8 H 0.100 0.900 9 N -0.682 5.682 10 C 0.134 3.866 11 C -0.202 4.202 12 C -0.097 4.097 13 C -0.191 4.191 14 C 0.079 3.921 15 C -0.505 4.505 16 H 0.073 0.927 17 C 0.036 3.964 18 N -0.825 5.825 19 Si 0.981 3.019 20 H -0.261 1.261 21 H -0.267 1.267 22 H -0.260 1.260 23 C -0.246 4.246 24 C -0.072 4.072 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.338 0.662 33 H 0.076 0.924 34 H 0.034 0.966 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.287 0.713 38 H 0.093 0.907 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.691 -8.442 -7.509 13.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.017 3.983 3 H 0.079 0.921 4 O -0.315 6.315 5 C -0.032 4.032 6 C -0.219 4.219 7 C -0.052 4.052 8 H 0.118 0.882 9 N -0.313 5.313 10 C 0.006 3.994 11 C -0.203 4.203 12 C -0.116 4.116 13 C -0.211 4.211 14 C 0.077 3.923 15 C -0.535 4.535 16 H 0.091 0.909 17 C -0.178 4.178 18 N -0.451 5.451 19 Si 0.801 3.199 20 H -0.185 1.185 21 H -0.191 1.191 22 H -0.185 1.185 23 C -0.266 4.266 24 C -0.091 4.091 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.126 0.874 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.157 0.843 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.098 -8.006 -7.758 13.779 hybrid contribution 1.521 -0.114 0.653 1.659 sum -6.577 -8.120 -7.105 12.636 Atomic orbital electron populations 1.21840 0.92286 1.02953 1.02814 1.22862 0.95981 0.95639 0.83826 0.92057 1.88838 1.40358 1.68111 1.34223 1.23615 0.87203 0.96624 0.95739 1.23783 1.01065 0.99932 0.97158 1.23046 0.96865 0.90896 0.94386 0.88238 1.60618 1.17895 1.50712 1.02077 1.20500 0.98468 0.93973 0.86487 1.19339 0.93660 1.00427 1.06897 1.20781 0.93787 0.98305 0.98714 1.21253 0.99219 0.96164 1.04427 1.17964 0.92259 0.91499 0.90555 1.19832 0.93495 1.22249 1.17911 0.90883 1.26728 0.99891 0.94233 0.96979 1.69871 1.15322 1.37051 1.22867 0.85278 0.76684 0.79363 0.78536 1.18520 1.19111 1.18451 1.21181 0.95044 1.02164 1.08216 1.20658 0.98320 0.94008 0.96108 0.90504 0.91943 0.91437 0.92617 0.87363 0.90216 0.88954 0.84305 0.90567 0.94762 0.87729 0.88339 0.90192 0.88904 0.86892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.36 71.98 0.67 -2.11 16 2 C 0.07 1.80 3.86 30.97 0.12 1.92 16 3 H 0.06 1.70 7.93 -2.39 -0.02 1.68 16 4 O -0.40 -10.04 11.19 -148.98 -1.67 -11.71 16 5 C 0.04 0.92 7.72 72.66 0.56 1.48 16 6 C -0.18 -3.55 6.63 31.89 0.21 -3.34 16 7 C 0.06 1.35 3.00 45.91 0.14 1.48 16 8 H 0.10 2.10 7.38 -2.39 -0.02 2.08 16 9 N -0.68 -19.62 6.17 -490.46 -3.03 -22.65 16 10 C 0.13 4.12 5.66 85.56 0.48 4.60 16 11 C -0.20 -8.20 5.41 -19.67 -0.11 -8.31 16 12 C -0.10 -4.35 9.67 22.22 0.21 -4.14 16 13 C -0.19 -10.07 8.70 22.73 0.20 -9.87 16 14 C 0.08 4.37 5.58 -21.29 -0.12 4.25 16 15 C -0.51 -27.84 9.05 23.46 0.21 -27.62 16 16 H 0.07 3.89 7.91 -2.91 -0.02 3.87 16 17 C 0.04 1.86 5.14 85.26 0.44 2.30 16 18 N -0.83 -43.64 10.95 21.83 0.24 -43.40 16 19 Si 0.98 38.60 29.60 68.60 2.03 40.63 16 20 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 21 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 22 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 23 C -0.25 -12.32 9.80 22.73 0.22 -12.10 16 24 C -0.07 -3.15 9.67 22.22 0.21 -2.94 16 25 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.08 1.60 7.98 -2.39 -0.02 1.58 16 31 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.34 10.30 8.39 -89.70 -0.75 9.54 16 33 H 0.08 2.18 8.02 -2.39 -0.02 2.16 16 34 H 0.03 0.98 8.08 -2.39 -0.02 0.96 16 35 H 0.10 4.13 8.06 -2.91 -0.02 4.10 16 36 H 0.10 5.45 6.16 -2.91 -0.02 5.43 16 37 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 38 H 0.09 4.44 8.06 -2.91 -0.02 4.42 16 39 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -59.25 321.63 1.32 -57.93 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: 0.28 Total: 33.58 kcal Atomic # 6 Polarization: -57.85 SS G_CDS: 3.46 Total: -54.38 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: -2.79 Total: -66.05 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -1.67 Total: -11.71 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -59.25 1.32 -57.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398985638.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.021 kcal (2) G-P(sol) polarization free energy of solvation -59.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds