Wall clock time and date at job start Mon Mar 30 2020 06:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99984 * 2 1 4 4 C 1.53777 * 113.61157 * 149.99871 * 3 2 1 5 5 C 1.53781 * 87.07888 * 140.06685 * 4 3 2 6 6 N 1.46905 * 113.61568 * 219.93513 * 5 4 3 7 7 C 1.46899 * 111.00120 * 203.47194 * 6 5 4 8 8 C 1.50698 * 109.47274 * 179.97438 * 7 6 5 9 9 C 1.38636 * 119.74867 * 269.73162 * 8 7 6 10 10 C 1.37625 * 120.24644 * 179.71957 * 9 8 7 11 11 C 1.40716 * 119.74514 * 0.57056 * 10 9 8 12 12 C 1.41393 * 120.24459 * 179.68171 * 11 10 9 13 13 H 1.08001 * 119.99914 * 24.41146 * 12 11 10 14 14 C 1.39945 * 119.99816 * 204.40519 * 12 11 10 15 15 N 1.30829 * 120.00009 * 17.86198 * 14 12 11 16 16 Si 1.86794 * 120.00038 * 197.85513 * 14 12 11 17 17 H 1.48495 * 109.47207 * 60.00250 * 16 14 12 18 18 H 1.48504 * 109.47421 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47180 * 300.00537 * 16 14 12 20 20 C 1.40720 * 119.51066 * 359.70063 * 11 10 9 21 21 C 1.37619 * 119.74482 * 0.02562 * 20 11 10 22 22 C 1.53772 * 87.08142 * 334.56791 * 5 4 3 23 23 H 1.08999 * 109.46890 * 299.99838 * 1 2 3 24 24 H 1.08996 * 109.46815 * 59.99717 * 1 2 3 25 25 H 1.08998 * 109.46849 * 179.97438 * 1 2 3 26 26 H 1.08998 * 112.84916 * 18.80469 * 3 2 1 27 27 H 1.09003 * 113.61333 * 25.52441 * 4 3 2 28 28 H 1.09000 * 113.61751 * 254.61541 * 4 3 2 29 29 H 1.09002 * 113.61711 * 89.11846 * 5 4 3 30 30 H 1.00899 * 110.99691 * 79.51324 * 6 5 4 31 31 H 1.08998 * 109.47199 * 300.00300 * 7 6 5 32 32 H 1.09002 * 109.47308 * 59.99760 * 7 6 5 33 33 H 1.08001 * 119.87755 * 359.97438 * 9 8 7 34 34 H 1.07997 * 120.12495 * 180.27410 * 10 9 8 35 35 H 0.96994 * 120.00129 * 179.97438 * 15 14 12 36 36 H 1.07993 * 120.12818 * 179.97438 * 20 11 10 37 37 H 1.07998 * 119.87477 * 179.97438 * 21 20 11 38 38 H 1.09004 * 113.61683 * 139.98180 * 22 5 4 39 39 H 1.09008 * 113.61571 * 270.88319 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.3756 1.3719 0.7045 5 6 3.8220 2.3199 -0.4210 6 7 5.1974 2.0825 -0.8794 7 6 5.7591 3.2872 -1.5049 8 6 7.1677 3.0062 -1.9609 9 6 8.2293 3.2434 -1.1014 10 6 9.5193 2.9850 -1.5053 11 6 9.7595 2.4894 -2.8002 12 6 11.0811 2.2266 -3.2284 13 1 11.8530 2.0194 -2.5020 14 6 11.3890 2.2349 -4.5936 15 7 10.5794 2.8131 -5.4432 16 14 12.9559 1.4206 -5.2026 17 1 12.9343 -0.0214 -4.8485 18 1 13.0491 1.5673 -6.6774 19 1 14.1304 2.0690 -4.5659 20 6 8.6746 2.2577 -3.6660 21 6 7.3925 2.5180 -3.2389 22 6 2.7532 1.6511 -1.3013 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.3138 2.0789 0.3238 27 1 3.9095 0.4216 0.7124 28 1 3.3382 1.8457 1.6854 29 1 3.6209 3.3707 -0.2123 30 1 5.2376 1.2956 -1.5096 31 1 5.1486 3.5697 -2.3625 32 1 5.7677 4.1021 -0.7810 33 1 8.0429 3.6287 -0.1098 34 1 10.3445 3.1664 -0.8326 35 1 10.7930 2.8191 -6.3894 36 1 8.8475 1.8779 -4.6620 37 1 6.5584 2.3413 -3.9017 38 1 2.2133 2.3504 -1.9398 39 1 3.1169 0.7772 -1.8418 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399007911.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:03 Heat of formation + Delta-G solvation = -12.331150 kcal Electronic energy + Delta-G solvation = -18542.253839 eV Core-core repulsion = 15642.782971 eV Total energy + Delta-G solvation = -2899.470868 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.60596 -37.69327 -36.56322 -34.24495 -32.84983 -29.80076 -29.19733 -27.09478 -26.18955 -25.68945 -23.59410 -22.35262 -20.97180 -20.10541 -19.50955 -17.26355 -16.97925 -15.92864 -15.39902 -15.27541 -15.01022 -14.45867 -14.17876 -13.84818 -13.47732 -13.22966 -12.67281 -12.44569 -12.37632 -11.99858 -11.90943 -11.71637 -11.39329 -11.26437 -11.05057 -10.91837 -10.87712 -10.77848 -10.47436 -10.27673 -9.59395 -9.52185 -9.35964 -9.09985 -7.98485 -7.41579 -7.26682 -6.74450 -4.32520 2.77289 3.07231 3.09980 3.12182 3.21264 3.64996 3.94472 4.46735 4.55430 4.58997 4.74593 4.80836 5.04188 5.08637 5.16531 5.28694 5.41996 5.66776 5.74100 5.77446 5.84998 5.93361 6.00445 6.08967 6.16594 6.33748 6.41137 6.45349 6.97581 7.09569 7.10147 7.30796 7.41083 7.46011 7.64595 7.76920 7.92699 8.08338 8.17577 8.33536 8.66757 8.92276 9.00957 10.20145 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.041400 B = 0.003221 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.160064 B = 8691.015654 C = 8931.116366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.377 6.377 3 C 0.059 3.941 4 C -0.125 4.125 5 C 0.069 3.931 6 N -0.670 5.670 7 C 0.124 3.876 8 C -0.215 4.215 9 C -0.068 4.068 10 C -0.229 4.229 11 C 0.112 3.888 12 C -0.463 4.463 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.794 5.794 16 Si 0.908 3.092 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.266 1.266 20 C -0.166 4.166 21 C -0.095 4.095 22 C -0.185 4.185 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.344 0.656 31 H 0.019 0.981 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.280 0.720 36 H 0.117 0.883 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.789 -1.689 5.962 16.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.295 6.295 3 C 0.001 3.999 4 C -0.163 4.163 5 C -0.043 4.043 6 N -0.300 5.300 7 C -0.004 4.004 8 C -0.217 4.217 9 C -0.087 4.087 10 C -0.248 4.248 11 C 0.110 3.890 12 C -0.493 4.493 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.420 5.420 16 Si 0.732 3.268 17 H -0.188 1.188 18 H -0.204 1.204 19 H -0.190 1.190 20 C -0.186 4.186 21 C -0.114 4.114 22 C -0.224 4.224 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.163 0.837 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.134 0.866 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.404 -1.645 6.313 15.813 hybrid contribution -0.047 -0.046 -1.286 1.288 sum -14.451 -1.691 5.028 15.394 Atomic orbital electron populations 1.22761 0.81638 1.02546 0.99710 1.87969 1.19258 1.27673 1.94617 1.23635 0.94093 0.84828 0.97334 1.23345 0.93762 1.01166 0.98053 1.22733 0.87730 0.98239 0.95560 1.60561 1.16602 1.07627 1.45235 1.20589 0.93108 0.91171 0.95484 1.18897 0.92559 1.14534 0.95666 1.20334 0.92725 0.99035 0.96627 1.20976 0.95053 1.10226 0.98590 1.17623 0.93272 0.87369 0.90752 1.19571 0.95268 1.42574 0.91886 0.90508 1.25911 0.98395 0.92957 0.96896 1.69824 1.36438 1.31450 1.04242 0.86380 0.81782 0.80843 0.77783 1.18817 1.20385 1.19021 1.21273 0.91038 1.05362 1.00894 1.20521 0.96182 1.00183 0.94511 1.24266 0.99288 1.01376 0.97520 0.94193 0.94234 0.89870 0.89805 0.88706 0.91134 0.88775 0.83662 0.96230 0.92074 0.89472 0.89113 0.90881 0.86566 0.89950 0.91693 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.85 101.05 1.10 1.35 16 2 O -0.38 -4.49 10.72 -35.23 -0.38 -4.86 16 3 C 0.06 0.64 4.31 -25.92 -0.11 0.53 16 4 C -0.12 -1.48 7.71 -25.92 -0.20 -1.68 16 5 C 0.07 0.87 4.16 -66.90 -0.28 0.59 16 6 N -0.67 -10.63 6.60 -107.13 -0.71 -11.34 16 7 C 0.12 2.18 5.66 -4.98 -0.03 2.15 16 8 C -0.21 -4.67 5.42 -104.33 -0.56 -5.23 16 9 C -0.07 -1.56 9.67 -39.66 -0.38 -1.94 16 10 C -0.23 -5.72 9.80 -38.87 -0.38 -6.10 16 11 C 0.11 3.03 5.58 -106.82 -0.60 2.44 16 12 C -0.46 -12.45 9.05 -37.74 -0.34 -12.79 16 13 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 14 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 15 N -0.79 -20.69 10.95 55.55 0.61 -20.08 16 16 Si 0.91 18.82 29.59 -169.99 -5.03 13.79 16 17 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 18 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 21 C -0.09 -2.21 9.67 -39.66 -0.38 -2.59 16 22 C -0.18 -2.14 7.54 -25.93 -0.20 -2.34 16 23 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.75 7.87 -51.93 -0.41 0.34 16 27 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.09 1.11 7.88 -51.93 -0.41 0.70 16 30 H 0.34 5.59 8.21 -39.29 -0.32 5.27 16 31 H 0.02 0.33 8.08 -51.93 -0.42 -0.09 16 32 H 0.06 1.03 8.07 -51.93 -0.42 0.61 16 33 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 35 H 0.28 6.65 8.30 -40.82 -0.34 6.32 16 36 H 0.12 3.14 6.15 -52.49 -0.32 2.82 16 37 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 1.16 7.83 -51.92 -0.41 0.75 16 LS Contribution 325.74 15.07 4.91 4.91 Total: -1.00 -27.86 325.74 -9.46 -37.32 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -6.06 Total: 8.75 kcal Atomic # 6 Polarization: -25.68 SS G_CDS: -2.79 Total: -28.48 kcal Atomic # 7 Polarization: -31.32 SS G_CDS: -0.10 Total: -31.42 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.38 Total: -4.86 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.86 -9.46 -37.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399007911.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.989 kcal (2) G-P(sol) polarization free energy of solvation -27.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds