Wall clock time and date at job start Mon Mar 30 2020 06:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99984 * 2 1 4 4 C 1.53777 * 113.61157 * 149.99871 * 3 2 1 5 5 C 1.53781 * 87.07888 * 140.06685 * 4 3 2 6 6 N 1.46905 * 113.61568 * 219.93513 * 5 4 3 7 7 C 1.46899 * 111.00120 * 203.47194 * 6 5 4 8 8 C 1.50698 * 109.47274 * 179.97438 * 7 6 5 9 9 C 1.38636 * 119.74867 * 269.73162 * 8 7 6 10 10 C 1.37625 * 120.24644 * 179.71957 * 9 8 7 11 11 C 1.40716 * 119.74514 * 0.57056 * 10 9 8 12 12 C 1.41393 * 120.24459 * 179.68171 * 11 10 9 13 13 H 1.08001 * 119.99914 * 24.41146 * 12 11 10 14 14 C 1.39945 * 119.99816 * 204.40519 * 12 11 10 15 15 N 1.30829 * 120.00009 * 17.86198 * 14 12 11 16 16 Si 1.86794 * 120.00038 * 197.85513 * 14 12 11 17 17 H 1.48495 * 109.47207 * 60.00250 * 16 14 12 18 18 H 1.48504 * 109.47421 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47180 * 300.00537 * 16 14 12 20 20 C 1.40720 * 119.51066 * 359.70063 * 11 10 9 21 21 C 1.37619 * 119.74482 * 0.02562 * 20 11 10 22 22 C 1.53772 * 87.08142 * 334.56791 * 5 4 3 23 23 H 1.08999 * 109.46890 * 299.99838 * 1 2 3 24 24 H 1.08996 * 109.46815 * 59.99717 * 1 2 3 25 25 H 1.08998 * 109.46849 * 179.97438 * 1 2 3 26 26 H 1.08998 * 112.84916 * 18.80469 * 3 2 1 27 27 H 1.09003 * 113.61333 * 25.52441 * 4 3 2 28 28 H 1.09000 * 113.61751 * 254.61541 * 4 3 2 29 29 H 1.09002 * 113.61711 * 89.11846 * 5 4 3 30 30 H 1.00899 * 110.99691 * 79.51324 * 6 5 4 31 31 H 1.08998 * 109.47199 * 300.00300 * 7 6 5 32 32 H 1.09002 * 109.47308 * 59.99760 * 7 6 5 33 33 H 1.08001 * 119.87755 * 359.97438 * 9 8 7 34 34 H 1.07997 * 120.12495 * 180.27410 * 10 9 8 35 35 H 0.96994 * 120.00129 * 179.97438 * 15 14 12 36 36 H 1.07993 * 120.12818 * 179.97438 * 20 11 10 37 37 H 1.07998 * 119.87477 * 179.97438 * 21 20 11 38 38 H 1.09004 * 113.61683 * 139.98180 * 22 5 4 39 39 H 1.09008 * 113.61571 * 270.88319 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.3756 1.3719 0.7045 5 6 3.8220 2.3199 -0.4210 6 7 5.1974 2.0825 -0.8794 7 6 5.7591 3.2872 -1.5049 8 6 7.1677 3.0062 -1.9609 9 6 8.2293 3.2434 -1.1014 10 6 9.5193 2.9850 -1.5053 11 6 9.7595 2.4894 -2.8002 12 6 11.0811 2.2266 -3.2284 13 1 11.8530 2.0194 -2.5020 14 6 11.3890 2.2349 -4.5936 15 7 10.5794 2.8131 -5.4432 16 14 12.9559 1.4206 -5.2026 17 1 12.9343 -0.0214 -4.8485 18 1 13.0491 1.5673 -6.6774 19 1 14.1304 2.0690 -4.5659 20 6 8.6746 2.2577 -3.6660 21 6 7.3925 2.5180 -3.2389 22 6 2.7532 1.6511 -1.3013 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.3138 2.0789 0.3238 27 1 3.9095 0.4216 0.7124 28 1 3.3382 1.8457 1.6854 29 1 3.6209 3.3707 -0.2123 30 1 5.2376 1.2956 -1.5096 31 1 5.1486 3.5697 -2.3625 32 1 5.7677 4.1021 -0.7810 33 1 8.0429 3.6287 -0.1098 34 1 10.3445 3.1664 -0.8326 35 1 10.7930 2.8191 -6.3894 36 1 8.8475 1.8779 -4.6620 37 1 6.5584 2.3413 -3.9017 38 1 2.2133 2.3504 -1.9398 39 1 3.1169 0.7772 -1.8418 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399007911.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:03 Heat of formation + Delta-G solvation = -28.619931 kcal Electronic energy + Delta-G solvation = -18542.960174 eV Core-core repulsion = 15642.782971 eV Total energy + Delta-G solvation = -2900.177203 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.54618 -39.45396 -37.57347 -35.90922 -34.36623 -31.54433 -31.08188 -28.21631 -27.45382 -26.60142 -25.08986 -23.49474 -22.86763 -21.69792 -20.66618 -19.20117 -17.84275 -17.26219 -16.81511 -16.21826 -16.09755 -15.85155 -15.60903 -15.57581 -14.82325 -14.51663 -14.25834 -13.80131 -13.74177 -13.38033 -13.24529 -13.03101 -12.85058 -12.72747 -12.56105 -12.36689 -12.17943 -11.79022 -11.78346 -11.69638 -11.29911 -11.21923 -10.98486 -10.39622 -9.37965 -9.23932 -9.09134 -8.63008 -6.31972 0.96473 1.17961 1.37614 1.48680 1.53814 2.21064 2.69083 2.89189 3.47727 3.67405 3.69051 3.85991 3.94776 4.03782 4.29434 4.37761 4.40846 4.55398 4.57827 4.62550 4.70635 4.77387 4.85523 4.86174 4.86448 5.06524 5.07479 5.16393 5.18165 5.21569 5.40092 5.49892 5.73260 5.98009 6.12171 6.24244 6.29988 6.35926 6.41921 6.52705 6.72381 6.95925 7.06336 8.33942 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.041400 B = 0.003221 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.160064 B = 8691.015654 C = 8931.116366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.404 6.404 3 C 0.067 3.933 4 C -0.126 4.126 5 C 0.067 3.933 6 N -0.680 5.680 7 C 0.132 3.868 8 C -0.201 4.201 9 C -0.073 4.073 10 C -0.246 4.246 11 C 0.078 3.922 12 C -0.504 4.504 13 H 0.073 0.927 14 C 0.035 3.965 15 N -0.826 5.826 16 Si 0.982 3.018 17 H -0.262 1.262 18 H -0.267 1.267 19 H -0.259 1.259 20 C -0.191 4.191 21 C -0.098 4.098 22 C -0.183 4.183 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.092 0.908 26 H 0.109 0.891 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.339 0.661 31 H 0.030 0.970 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.288 0.712 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.430 -1.359 6.633 17.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.323 6.323 3 C 0.009 3.991 4 C -0.165 4.165 5 C -0.043 4.043 6 N -0.310 5.310 7 C 0.004 3.996 8 C -0.203 4.203 9 C -0.091 4.091 10 C -0.266 4.266 11 C 0.076 3.924 12 C -0.534 4.534 13 H 0.091 0.909 14 C -0.180 4.180 15 N -0.453 5.453 16 Si 0.802 3.198 17 H -0.186 1.186 18 H -0.191 1.191 19 H -0.183 1.183 20 C -0.210 4.210 21 C -0.117 4.117 22 C -0.222 4.222 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.110 0.890 26 H 0.127 0.873 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.128 0.872 30 H 0.158 0.842 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.131 0.869 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.071 -1.309 7.000 17.578 hybrid contribution 0.284 -0.129 -1.400 1.434 sum -15.787 -1.439 5.600 16.812 Atomic orbital electron populations 1.22962 0.79846 1.03628 1.00817 1.87933 1.21342 1.28351 1.94693 1.23639 0.94034 0.85232 0.96223 1.23309 0.94435 1.00090 0.98628 1.22850 0.86036 0.99373 0.96064 1.60486 1.19046 1.06663 1.44782 1.20499 0.90490 0.92233 0.96384 1.19368 0.94844 1.11497 0.94571 1.20658 0.92061 0.98449 0.97953 1.21186 0.96457 1.10694 0.98223 1.17974 0.93884 0.88594 0.91947 1.19812 0.95521 1.44944 0.93077 0.90870 1.26757 1.01920 0.92866 0.96446 1.69875 1.38362 1.32237 1.04779 0.85263 0.77365 0.79478 0.77655 1.18606 1.19077 1.18347 1.21252 0.92309 1.07054 1.00418 1.20780 0.95679 0.99603 0.95659 1.24191 0.99151 1.00903 0.97960 0.92709 0.93424 0.88978 0.87297 0.90702 0.89832 0.87190 0.84204 0.95185 0.90660 0.86862 0.88798 0.90185 0.88344 0.87906 0.90480 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.85 113.37 1.23 1.56 16 2 O -0.40 -8.86 10.72 -148.98 -1.60 -10.45 16 3 C 0.07 1.27 4.31 31.12 0.13 1.40 16 4 C -0.13 -2.72 7.71 31.12 0.24 -2.48 16 5 C 0.07 1.52 4.16 45.44 0.19 1.71 16 6 N -0.68 -20.18 6.60 -492.86 -3.25 -23.43 16 7 C 0.13 4.28 5.66 85.56 0.48 4.76 16 8 C -0.20 -8.49 5.42 -19.67 -0.11 -8.60 16 9 C -0.07 -3.25 9.67 22.22 0.21 -3.03 16 10 C -0.25 -12.53 9.80 22.73 0.22 -12.31 16 11 C 0.08 4.38 5.58 -21.29 -0.12 4.26 16 12 C -0.50 -28.14 9.05 23.46 0.21 -27.92 16 13 H 0.07 3.95 7.91 -2.91 -0.02 3.93 16 14 C 0.03 1.80 5.14 85.26 0.44 2.24 16 15 N -0.83 -44.27 10.95 21.83 0.24 -44.03 16 16 Si 0.98 39.16 29.59 68.60 2.03 41.19 16 17 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 18 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 19 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 20 C -0.19 -10.29 8.70 22.73 0.20 -10.09 16 21 C -0.10 -4.57 9.67 22.22 0.21 -4.36 16 22 C -0.18 -3.82 7.54 31.12 0.23 -3.58 16 23 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.11 1.52 7.87 -2.39 -0.02 1.51 16 27 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.11 2.18 7.88 -2.39 -0.02 2.16 16 30 H 0.34 10.62 8.21 -89.69 -0.74 9.88 16 31 H 0.03 0.92 8.08 -2.39 -0.02 0.90 16 32 H 0.08 2.26 8.07 -2.39 -0.02 2.25 16 33 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16 34 H 0.09 4.56 8.06 -2.91 -0.02 4.54 16 35 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 36 H 0.10 5.57 6.15 -2.91 -0.02 5.55 16 37 H 0.10 4.26 8.06 -2.91 -0.02 4.23 16 38 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.08 1.84 7.83 -2.38 -0.02 1.82 16 Total: -1.00 -61.38 325.74 1.50 -59.88 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: 0.29 Total: 33.29 kcal Atomic # 6 Polarization: -60.23 SS G_CDS: 3.79 Total: -56.44 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: -3.02 Total: -67.46 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -1.60 Total: -10.45 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -61.38 1.50 -59.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399007911.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.259 kcal (2) G-P(sol) polarization free energy of solvation -61.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds