Wall clock time and date at job start Mon Mar 30 2020 06:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.99454 * 2 1 4 4 C 1.54105 * 109.87762 * 238.91706 * 2 1 3 5 5 C 1.54805 * 104.18776 * 238.54762 * 4 2 1 6 6 H 1.09002 * 110.90782 * 97.35660 * 5 4 2 7 7 N 1.46900 * 110.90883 * 220.92055 * 5 4 2 8 8 C 1.46895 * 111.00149 * 202.07445 * 7 5 4 9 9 H 1.08995 * 109.47668 * 324.99574 * 8 7 5 10 10 C 1.50707 * 109.47355 * 85.00240 * 8 7 5 11 11 H 1.07998 * 120.00052 * 64.73839 * 10 8 7 12 12 C 1.37874 * 119.99744 * 244.74934 * 10 8 7 13 13 N 1.31519 * 120.00037 * 184.69613 * 12 10 8 14 14 Si 1.86807 * 120.00079 * 4.69070 * 12 10 8 15 15 H 1.48499 * 109.46761 * 84.59124 * 14 12 10 16 16 H 1.48497 * 109.47092 * 204.58720 * 14 12 10 17 17 H 1.48496 * 109.47031 * 324.59361 * 14 12 10 18 18 C 1.50700 * 109.47053 * 204.99583 * 8 7 5 19 19 C 1.38234 * 120.00485 * 314.63178 * 18 8 7 20 20 C 1.38236 * 120.00478 * 179.78523 * 19 18 8 21 21 C 1.38237 * 119.99683 * 0.46103 * 20 19 18 22 22 C 1.38233 * 120.00057 * 359.76963 * 21 20 19 23 23 C 1.38235 * 119.99943 * 0.02562 * 22 21 20 24 24 C 1.54994 * 102.12617 * 339.13561 * 5 4 2 25 25 O 1.43747 * 109.87877 * 121.09053 * 2 1 3 26 26 H 1.08999 * 109.47009 * 181.08533 * 1 2 3 27 27 H 1.08998 * 109.46721 * 301.08028 * 1 2 3 28 28 H 1.08997 * 109.46747 * 61.07789 * 1 2 3 29 29 H 1.08994 * 110.48538 * 119.87115 * 4 2 1 30 30 H 1.09004 * 110.48683 * 357.22469 * 4 2 1 31 31 H 1.00895 * 110.99901 * 78.11349 * 7 5 4 32 32 H 0.97000 * 119.99647 * 179.97438 * 13 12 10 33 33 H 1.08007 * 119.99749 * 359.97438 * 19 18 8 34 34 H 1.07995 * 120.00467 * 180.25227 * 20 19 18 35 35 H 1.07996 * 120.00268 * 179.78996 * 21 20 19 36 36 H 1.07997 * 120.00233 * 179.97438 * 22 21 20 37 37 H 1.08008 * 120.00071 * 179.97438 * 23 22 21 38 38 H 1.08999 * 110.61920 * 155.50480 * 24 5 4 39 39 H 1.08993 * 110.61906 * 278.50397 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0540 -0.7482 -1.2412 5 6 2.9195 -1.8915 -0.6577 6 1 2.3541 -2.8222 -0.6106 7 7 4.1508 -2.0680 -1.4392 8 6 4.7039 -3.4160 -1.2526 9 1 4.5246 -3.7440 -0.2288 10 6 4.0366 -4.3698 -2.2098 11 1 4.1706 -4.2483 -3.2746 12 6 3.2549 -5.3974 -1.7262 13 7 2.7481 -6.2842 -2.5548 14 14 2.9157 -5.5303 0.1060 15 1 1.7621 -4.6649 0.4598 16 1 2.6008 -6.9401 0.4501 17 1 4.1146 -5.0915 0.8644 18 6 6.1869 -3.3919 -1.5199 19 6 6.6786 -2.7307 -2.6298 20 6 8.0392 -2.7048 -2.8726 21 6 8.9074 -3.3481 -2.0105 22 6 8.4154 -4.0134 -0.9031 23 6 7.0551 -4.0357 -0.6581 24 6 3.2380 -1.3652 0.7649 25 8 2.0188 -0.6981 1.1576 26 1 -0.3633 -1.0275 0.0195 27 1 -0.3633 0.5305 0.8801 28 1 -0.3633 0.4970 -0.8995 29 1 2.6619 -0.0859 -1.8574 30 1 1.2246 -1.1548 -1.8199 31 1 4.8322 -1.3618 -1.2047 32 1 2.1985 -7.0073 -2.2145 33 1 5.9998 -2.2317 -3.3058 34 1 8.4237 -2.1848 -3.7375 35 1 9.9701 -3.3308 -2.2019 36 1 9.0936 -4.5164 -0.2298 37 1 6.6706 -4.5558 0.2069 38 1 3.4581 -2.1923 1.4398 39 1 4.0688 -0.6603 0.7363 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402184631.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:58 Heat of formation + Delta-G solvation = -20.654564 kcal Electronic energy + Delta-G solvation = -19930.953047 eV Core-core repulsion = 17031.121249 eV Total energy + Delta-G solvation = -2899.831799 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.43137 -38.58250 -35.45092 -32.52943 -31.93171 -31.18830 -30.27707 -28.40067 -26.35961 -25.51433 -22.83879 -21.99012 -21.24382 -20.26275 -19.87564 -17.04444 -16.54555 -15.99243 -15.63149 -15.14306 -14.67942 -14.42104 -14.22928 -13.66461 -13.29233 -12.96447 -12.76852 -12.69975 -12.62775 -12.23331 -12.03933 -11.98089 -11.53852 -11.31104 -11.07564 -10.95786 -10.62279 -10.43339 -10.19106 -10.09744 -9.79875 -9.66782 -9.45201 -8.69581 -8.30920 -7.99223 -7.41603 -6.20208 -4.18188 2.00704 2.04396 3.15127 3.20215 3.26176 4.05225 4.25507 4.42521 4.90704 5.00098 5.07442 5.18005 5.27751 5.44059 5.45862 5.48059 5.54554 5.62679 5.65289 5.79053 5.91533 5.98490 6.00885 6.13458 6.17717 6.20249 6.28072 6.39227 6.46987 6.57620 6.63341 6.73717 7.05523 7.09555 7.12747 7.37163 7.43951 7.67293 7.88376 8.20071 8.54616 8.92346 9.40971 10.92513 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.016093 B = 0.007805 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.518998 B = 3586.740330 C = 4523.367770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.069 3.931 3 H 0.062 0.938 4 C -0.140 4.140 5 C 0.064 3.936 6 H 0.098 0.902 7 N -0.663 5.663 8 C 0.205 3.795 9 H 0.026 0.974 10 C -0.478 4.478 11 H 0.081 0.919 12 C 0.074 3.926 13 N -0.888 5.888 14 Si 0.861 3.139 15 H -0.269 1.269 16 H -0.286 1.286 17 H -0.265 1.265 18 C -0.043 4.043 19 C -0.102 4.102 20 C -0.127 4.127 21 C -0.146 4.146 22 C -0.124 4.124 23 C -0.128 4.128 24 C 0.014 3.986 25 O -0.379 6.379 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.314 0.686 32 H 0.266 0.734 33 H 0.126 0.874 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.083 0.917 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.556 10.046 4.376 11.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.011 3.989 3 H 0.080 0.920 4 C -0.178 4.178 5 C -0.047 4.047 6 H 0.116 0.884 7 N -0.294 5.294 8 C 0.098 3.902 9 H 0.043 0.957 10 C -0.517 4.517 11 H 0.099 0.901 12 C -0.129 4.129 13 N -0.526 5.526 14 Si 0.689 3.311 15 H -0.195 1.195 16 H -0.212 1.212 17 H -0.190 1.190 18 C -0.044 4.044 19 C -0.121 4.121 20 C -0.145 4.145 21 C -0.164 4.164 22 C -0.142 4.142 23 C -0.147 4.147 24 C -0.064 4.064 25 O -0.297 6.297 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.132 0.868 32 H 0.076 0.924 33 H 0.144 0.856 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.101 0.899 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.989 9.692 3.979 10.896 hybrid contribution 0.247 -0.294 1.638 1.682 sum 3.236 9.398 5.618 11.417 Atomic orbital electron populations 1.21922 0.94159 1.02846 1.01767 1.22763 0.94878 0.95481 0.85787 0.91990 1.22960 1.00249 0.97583 0.96997 1.23055 0.93676 0.99105 0.88897 0.88413 1.61138 1.05506 1.05329 1.57456 1.18921 0.87289 0.87428 0.96514 0.95657 1.20802 1.27677 1.08693 0.94520 0.90080 1.25089 0.95375 0.95366 0.97059 1.69872 1.33823 1.14248 1.34619 0.87174 0.79224 0.77777 0.86903 1.19458 1.21200 1.19040 1.20419 0.96431 0.93954 0.93587 1.21025 0.94489 0.99401 0.97153 1.21080 0.93928 1.00344 0.99140 1.20904 0.98820 1.00470 0.96187 1.20955 0.95245 1.00175 0.97874 1.21011 0.93104 1.00565 0.99991 1.24435 0.87479 0.96014 0.98514 1.88827 1.39811 1.67801 1.33307 0.91811 0.92481 0.91373 0.90208 0.90227 0.86773 0.92390 0.85628 0.87056 0.87279 0.87154 0.87102 0.89853 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.36 37.16 0.35 -1.56 16 2 C 0.07 1.01 4.06 -26.15 -0.11 0.90 16 3 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.14 -2.22 6.39 -25.20 -0.16 -2.38 16 5 C 0.06 1.21 3.17 -65.71 -0.21 1.00 16 6 H 0.10 2.16 5.42 -51.93 -0.28 1.88 16 7 N -0.66 -12.90 5.65 -100.08 -0.57 -13.47 16 8 C 0.20 4.53 2.10 -70.02 -0.15 4.39 16 9 H 0.03 0.59 3.99 -51.93 -0.21 0.38 16 10 C -0.48 -12.80 8.81 -34.44 -0.30 -13.11 16 11 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 12 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 13 N -0.89 -26.29 13.96 55.43 0.77 -25.52 16 14 Si 0.86 20.66 25.58 -169.99 -4.35 16.32 16 15 H -0.27 -6.34 6.82 56.52 0.39 -5.95 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.26 -6.03 6.21 56.52 0.35 -5.68 16 18 C -0.04 -0.87 4.65 -104.62 -0.49 -1.36 16 19 C -0.10 -1.92 9.07 -39.58 -0.36 -2.28 16 20 C -0.13 -2.07 10.05 -39.58 -0.40 -2.46 16 21 C -0.15 -2.27 10.05 -39.58 -0.40 -2.66 16 22 C -0.12 -2.05 10.05 -39.58 -0.40 -2.44 16 23 C -0.13 -2.44 9.67 -39.58 -0.38 -2.82 16 24 C 0.01 0.24 7.30 38.21 0.28 0.52 16 25 O -0.38 -6.58 11.19 -35.23 -0.39 -6.97 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.18 8.06 -51.93 -0.42 0.76 16 30 H 0.08 1.28 7.70 -51.93 -0.40 0.88 16 31 H 0.31 5.45 7.66 -39.29 -0.30 5.15 16 32 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.13 2.36 7.89 -52.48 -0.41 1.94 16 34 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 35 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 37 H 0.11 2.07 8.00 -52.48 -0.42 1.65 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.06 0.88 7.79 -51.93 -0.40 0.47 16 LS Contribution 314.45 15.07 4.74 4.74 Total: -1.00 -29.10 314.45 -8.47 -37.56 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -5.85 Total: 9.63 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -2.82 Total: -22.30 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.21 Total: -38.98 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.39 Total: -6.97 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.35 Total: 16.32 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.10 -8.47 -37.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402184631.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.907 kcal (2) G-P(sol) polarization free energy of solvation -29.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds